Wall clock time and date at job start Tue Mar 31 2020 10:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99621 * 2 1 4 4 C 1.53001 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46931 * 180.02562 * 4 3 2 6 6 O 1.21272 * 120.00174 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99898 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00161 * 175.03162 * 7 5 4 9 9 C 1.53005 * 109.45452 * 303.00975 * 8 7 5 10 10 C 1.53000 * 109.47315 * 303.05439 * 9 8 7 11 11 O 1.42894 * 109.46941 * 184.39392 * 10 9 8 12 12 C 1.42903 * 113.99991 * 180.02562 * 11 10 9 13 13 C 1.53041 * 109.45892 * 183.05281 * 8 7 5 14 14 C 1.53182 * 109.31328 * 301.33898 * 13 8 7 15 15 N 1.46924 * 108.77983 * 305.36988 * 14 13 8 16 16 C 1.36938 * 120.63366 * 233.63215 * 15 14 13 17 17 H 1.08002 * 119.99665 * 31.75599 * 16 15 14 18 18 C 1.38812 * 120.00299 * 211.75900 * 16 15 14 19 19 N 1.31613 * 119.99654 * 10.84518 * 18 16 15 20 20 Si 1.86802 * 119.99995 * 190.83961 * 18 16 15 21 21 H 1.48499 * 109.47027 * 90.00516 * 20 18 16 22 22 H 1.48500 * 109.46818 * 210.00308 * 20 18 16 23 23 H 1.48496 * 109.46978 * 330.00161 * 20 18 16 24 24 C 1.46924 * 118.73981 * 53.60294 * 15 14 13 25 25 C 1.53037 * 109.46076 * 62.97976 * 8 7 5 26 26 H 1.09004 * 109.46778 * 299.99390 * 1 2 3 27 27 H 1.08990 * 109.47519 * 60.00084 * 1 2 3 28 28 H 1.09008 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47348 * 60.00216 * 3 2 1 30 30 H 1.08997 * 109.47218 * 299.99693 * 3 2 1 31 31 H 1.08996 * 109.47259 * 59.99855 * 4 3 2 32 32 H 1.09007 * 109.47007 * 300.00097 * 4 3 2 33 33 H 0.97006 * 119.99692 * 355.02824 * 7 5 4 34 34 H 1.08997 * 109.47303 * 63.05915 * 9 8 7 35 35 H 1.09005 * 109.46991 * 183.05817 * 9 8 7 36 36 H 1.08996 * 109.47297 * 304.39993 * 10 9 8 37 37 H 1.09005 * 109.46794 * 64.39460 * 10 9 8 38 38 H 1.08998 * 109.47790 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47343 * 300.00378 * 12 11 10 40 40 H 1.08996 * 109.47364 * 59.99843 * 12 11 10 41 41 H 1.09000 * 109.49847 * 61.29814 * 13 8 7 42 42 H 1.09006 * 109.49506 * 181.38826 * 13 8 7 43 43 H 1.08998 * 109.58846 * 185.58138 * 14 13 8 44 44 H 1.09004 * 109.58507 * 65.15646 * 14 13 8 45 45 H 0.97001 * 119.99968 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.59242 * 186.60796 * 24 15 14 47 47 H 1.09001 * 109.70498 * 66.25413 * 24 15 14 48 48 H 1.09002 * 109.49507 * 178.60795 * 25 8 7 49 49 H 1.08995 * 109.50306 * 298.70860 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 0.0000 6 8 3.4355 3.5425 0.0004 7 7 5.4887 2.7023 -0.0009 8 6 6.0850 4.0360 -0.1102 9 6 5.5846 4.7149 -1.3868 10 6 5.9187 3.8382 -2.5954 11 8 5.5437 4.5179 -3.7950 12 6 5.8141 3.7812 -4.9893 13 6 7.6093 3.9101 -0.1639 14 6 8.1037 3.1993 1.0997 15 7 7.5988 3.9201 2.2762 16 6 8.4569 4.3465 3.2545 17 1 9.4658 4.6353 2.9996 18 6 8.0299 4.4074 4.5740 19 7 6.8842 3.8602 4.9208 20 14 9.0815 5.2659 5.8572 21 1 8.7026 6.6999 5.9289 22 1 8.8641 4.6297 7.1814 23 1 10.5135 5.1503 5.4816 24 6 6.1559 4.1753 2.3828 25 6 5.6831 4.8753 1.1048 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8574 0.6436 0.8892 33 1 6.0586 1.9206 0.0708 34 1 4.5051 4.8533 -1.3256 35 1 6.0695 5.6850 -1.4965 36 1 6.9895 3.6354 -2.6122 37 1 5.3719 2.8979 -2.5243 38 1 5.5015 4.3650 -5.8551 39 1 6.8827 3.5768 -5.0560 40 1 5.2649 2.8400 -4.9678 41 1 7.8959 3.3321 -1.0424 42 1 8.0546 4.9035 -0.2204 43 1 9.1936 3.1950 1.1138 44 1 7.7320 2.1746 1.1116 45 1 6.5857 3.9031 5.8427 46 1 5.9605 4.8150 3.2434 47 1 5.6234 3.2315 2.5007 48 1 6.1466 5.8595 1.0364 49 1 4.5989 4.9841 1.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150889247.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:28 Heat of formation + Delta-G solvation = -132.414926 kcal Electronic energy + Delta-G solvation = -28362.494058 eV Core-core repulsion = 24517.553617 eV Total energy + Delta-G solvation = -3844.940441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67031 -39.38528 -38.65463 -38.44968 -36.21079 -33.80333 -33.29331 -32.13100 -31.70272 -30.37179 -27.73385 -27.42723 -26.39883 -24.85204 -24.59648 -23.59793 -22.09846 -21.48628 -20.13137 -18.81537 -18.38660 -17.51682 -17.26971 -16.97471 -16.82691 -16.70574 -16.46004 -15.91521 -15.86991 -15.62691 -15.34187 -15.16696 -14.88536 -14.67004 -14.37660 -14.12001 -13.87181 -13.65457 -13.19964 -13.01289 -12.82326 -12.73171 -12.70410 -12.62232 -12.39745 -12.22777 -12.16296 -12.13389 -12.05844 -11.92473 -11.78711 -11.32798 -11.27008 -10.67337 -10.61549 -10.53593 -10.40588 -9.92128 -8.58624 -7.84589 -5.35701 1.46411 1.48058 1.56196 1.71793 2.09797 2.51378 2.82719 2.99566 3.31719 3.69693 3.72982 3.86646 3.97719 4.06251 4.13165 4.18682 4.22436 4.38627 4.46698 4.51630 4.51986 4.54741 4.55750 4.56434 4.60912 4.71187 4.76077 4.81801 4.84550 4.85529 4.85806 4.92928 5.01671 5.08088 5.14843 5.19889 5.29635 5.37655 5.52230 5.65490 5.69733 5.80027 6.14593 6.27739 6.43087 6.67870 7.18120 7.35437 7.88906 8.41050 9.20373 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.004416 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.138066 B = 6339.329400 C = 8446.770973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.082 3.918 4 C -0.133 4.133 5 C 0.517 3.483 6 O -0.572 6.572 7 N -0.706 5.706 8 C 0.202 3.798 9 C -0.120 4.120 10 C 0.073 3.927 11 O -0.420 6.420 12 C 0.026 3.974 13 C -0.127 4.127 14 C 0.141 3.859 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.068 0.932 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.196 3.804 25 C -0.139 4.139 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.027 0.973 45 H 0.247 0.753 46 H 0.039 0.961 47 H -0.002 1.002 48 H 0.051 0.949 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -7.073 -17.659 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.005 3.995 4 C -0.173 4.173 5 C 0.305 3.695 6 O -0.452 6.452 7 N -0.358 5.358 8 C 0.116 3.884 9 C -0.159 4.159 10 C -0.003 4.003 11 O -0.340 6.340 12 C -0.070 4.070 13 C -0.166 4.166 14 C 0.016 3.984 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.190 1.190 24 C 0.070 3.930 25 C -0.178 4.178 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.070 0.930 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.663 -6.386 -17.522 19.490 hybrid contribution 0.339 0.271 1.381 1.447 sum -5.324 -6.114 -16.141 18.063 Atomic orbital electron populations 1.22939 0.79328 1.04051 1.00695 1.87766 1.21599 1.27879 1.95620 1.22047 0.92514 0.84094 1.00858 1.21447 0.94807 0.94103 1.06918 1.20705 0.82482 0.91431 0.74911 1.90636 1.61841 1.41792 1.50918 1.46009 1.06351 1.09541 1.73885 1.19980 0.93265 0.82228 0.92896 1.21788 1.02565 0.99310 0.92218 1.22486 0.99516 0.94701 0.83569 1.87839 1.85226 1.45741 1.15164 1.22916 1.00657 0.96829 0.86619 1.22286 0.92378 1.02694 0.99217 1.21079 0.97733 0.93461 0.86122 1.44226 1.02943 1.64643 1.21289 1.19517 0.95891 1.36825 0.86931 0.91470 1.25881 0.98741 1.00615 0.99133 1.70149 1.23331 1.47650 1.16974 0.85310 0.79159 0.77778 0.78449 1.21658 1.22301 1.18967 1.20295 0.83389 0.95535 0.93806 1.22381 1.00338 0.98685 0.96444 0.93882 0.93139 0.87724 0.94012 0.92638 0.85671 0.87622 0.75312 0.91570 0.90948 0.91463 0.93284 0.88667 0.92833 0.93455 0.88368 0.91016 0.92176 0.95499 0.94383 0.94243 0.98435 0.92983 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.68 10.70 -148.98 -1.59 -11.27 16 3 C 0.08 2.04 5.23 71.98 0.38 2.42 16 4 C -0.13 -3.06 6.07 29.85 0.18 -2.88 16 5 C 0.52 15.34 7.00 87.66 0.61 15.95 16 6 O -0.57 -21.05 12.26 -3.01 -0.04 -21.09 16 7 N -0.71 -19.67 3.36 -422.80 -1.42 -21.09 16 8 C 0.20 6.31 0.35 3.63 0.00 6.31 16 9 C -0.12 -3.53 4.32 30.60 0.13 -3.40 16 10 C 0.07 1.75 5.50 71.98 0.40 2.14 16 11 O -0.42 -10.71 10.70 -148.98 -1.59 -12.30 16 12 C 0.03 0.43 11.01 113.37 1.25 1.68 16 13 C -0.13 -3.64 4.72 30.67 0.14 -3.50 16 14 C 0.14 5.14 6.24 86.36 0.54 5.68 16 15 N -0.61 -29.27 2.98 -699.12 -2.09 -31.35 16 16 C -0.26 -14.07 9.57 84.03 0.80 -13.27 16 17 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 18 C -0.05 -2.69 5.04 84.86 0.43 -2.26 16 19 N -0.94 -55.70 11.09 21.65 0.24 -55.46 16 20 Si 0.96 44.97 29.57 68.60 2.03 46.99 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C 0.20 9.59 4.99 86.36 0.43 10.02 16 25 C -0.14 -5.63 4.71 30.67 0.14 -5.48 16 26 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 30 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.41 9.67 7.18 -92.70 -0.67 9.00 16 34 H 0.07 2.29 6.22 -2.39 -0.01 2.28 16 35 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.07 1.35 6.27 -2.39 -0.01 1.34 16 37 H 0.05 1.11 7.46 -2.38 -0.02 1.09 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 2.08 6.35 -2.39 -0.02 2.07 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 44 H 0.03 0.93 6.88 -2.38 -0.02 0.91 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.04 2.27 6.14 -2.39 -0.01 2.26 16 47 H 0.00 -0.13 7.74 -2.39 -0.02 -0.14 16 48 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.06 2.54 6.26 -2.39 -0.01 2.52 16 Total: -1.00 -70.37 378.11 2.49 -67.88 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.26 Total: 22.58 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.69 Total: 15.10 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -3.26 Total: -107.90 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -3.23 Total: -44.66 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.37 2.49 -67.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150889247.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.531 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds