Wall clock time and date at job start Tue Mar 31 2020 10:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46798 * 2 1 4 4 C 1.36936 * 119.99945 * 85.13744 * 3 2 1 5 5 H 1.08004 * 119.99758 * 31.54109 * 4 3 2 6 6 C 1.38810 * 120.00171 * 211.54441 * 4 3 2 7 7 N 1.31628 * 119.99711 * 18.38369 * 6 4 3 8 8 Si 1.86794 * 120.00324 * 198.38392 * 6 4 3 9 9 H 1.48504 * 109.47002 * 59.99930 * 8 6 4 10 10 H 1.48497 * 109.47300 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47191 * 300.00303 * 8 6 4 12 12 C 1.46496 * 119.99851 * 265.40949 * 3 2 1 13 13 H 1.08997 * 109.47164 * 180.43984 * 12 3 2 14 14 C 1.53005 * 109.47030 * 60.44511 * 12 3 2 15 15 C 1.52993 * 109.47519 * 300.44154 * 12 3 2 16 16 N 1.46495 * 109.47040 * 305.00281 * 15 12 3 17 17 C 1.34781 * 120.00108 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00317 * 179.97438 * 17 16 15 20 20 O 1.42902 * 109.47134 * 180.02562 * 19 17 16 21 21 C 1.42905 * 113.99575 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46747 * 179.97438 * 21 20 19 23 23 H 1.09005 * 110.74952 * 57.02135 * 22 21 20 24 24 C 1.55303 * 110.84538 * 180.71031 * 22 21 20 25 25 C 1.54952 * 100.93775 * 152.32526 * 24 22 21 26 26 O 1.43640 * 105.14030 * 323.55510 * 25 24 22 27 27 C 1.43243 * 109.96775 * 24.42667 * 26 25 24 28 28 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47147 * 299.99723 * 1 2 3 30 30 H 1.09006 * 109.47017 * 60.00296 * 1 2 3 31 31 H 1.08998 * 109.47147 * 240.00277 * 2 1 3 32 32 H 1.08993 * 109.46891 * 119.99901 * 2 1 3 33 33 H 0.96999 * 119.99202 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47159 * 59.99716 * 14 12 3 35 35 H 1.09001 * 109.46814 * 179.97438 * 14 12 3 36 36 H 1.09005 * 109.47037 * 299.99661 * 14 12 3 37 37 H 1.09001 * 109.46990 * 65.00049 * 15 12 3 38 38 H 1.08994 * 109.47449 * 184.99811 * 15 12 3 39 39 H 0.96996 * 120.00409 * 359.97438 * 16 15 12 40 40 H 1.09001 * 109.47116 * 300.00434 * 19 17 16 41 41 H 1.09003 * 109.47216 * 60.00304 * 19 17 16 42 42 H 1.09001 * 109.47193 * 299.99889 * 21 20 19 43 43 H 1.08995 * 109.47094 * 59.99982 * 21 20 19 44 44 H 1.09000 * 111.13011 * 270.24257 * 24 22 21 45 45 H 1.09001 * 111.12664 * 34.41158 * 24 22 21 46 46 H 1.09006 * 110.30984 * 204.64080 * 25 24 22 47 47 H 1.08999 * 110.39632 * 82.51913 * 25 24 22 48 48 H 1.08994 * 109.83033 * 238.77327 * 27 26 25 49 49 H 1.09008 * 109.90162 * 117.84131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1517 2.0603 1.1816 5 1 2.4021 1.5260 2.0862 6 6 1.9652 3.4354 1.2169 7 7 1.3215 4.0374 0.2393 8 14 2.6276 4.4314 2.6516 9 1 4.1015 4.2672 2.7295 10 1 2.2998 5.8659 2.4516 11 1 2.0089 3.9530 3.9139 12 6 2.3582 2.0380 -1.2646 13 1 2.7077 3.0511 -1.0655 14 6 1.1186 2.0930 -2.1600 15 6 3.4619 1.2471 -1.9697 16 7 4.6047 1.0921 -1.0664 17 6 5.7014 0.4240 -1.4756 18 8 5.7423 -0.0485 -2.5918 19 6 6.8773 0.2651 -0.5466 20 8 7.9081 -0.4738 -1.2051 21 6 9.0747 -0.6822 -0.4064 22 6 10.1055 -1.4798 -1.2077 23 1 10.3509 -0.9684 -2.1384 24 6 11.3816 -1.7403 -0.3618 25 6 11.8919 -3.0580 -0.9977 26 8 10.7066 -3.8032 -1.3188 27 6 9.5980 -2.9113 -1.4845 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.1915 4.9984 0.2638 34 1 0.3324 2.6566 -1.6577 35 1 1.3714 2.5821 -3.1007 36 1 0.7690 1.0800 -2.3591 37 1 3.0829 0.2638 -2.2481 38 1 3.7767 1.7821 -2.8655 39 1 4.5722 1.4703 -0.1738 40 1 7.2564 1.2485 -0.2688 41 1 6.5626 -0.2695 0.3497 42 1 9.4992 0.2815 -0.1250 43 1 8.8053 -1.2369 0.4924 44 1 12.1072 -0.9367 -0.4877 45 1 11.1337 -1.8820 0.6901 46 1 12.5041 -3.6100 -0.2844 47 1 12.4629 -2.8473 -1.9019 48 1 8.8088 -3.1671 -0.7776 49 1 9.2173 -2.9780 -2.5038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155590689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:00 Heat of formation + Delta-G solvation = -114.220550 kcal Electronic energy + Delta-G solvation = -27072.896174 eV Core-core repulsion = 23228.744700 eV Total energy + Delta-G solvation = -3844.151474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.85377 -39.27202 -37.57727 -36.75093 -33.74463 -33.16992 -31.91963 -30.96199 -29.94969 -28.38636 -28.14611 -25.72660 -24.68257 -23.87686 -22.61495 -21.63333 -21.02428 -19.96544 -19.30383 -17.38139 -17.20484 -16.73966 -16.58329 -16.06289 -15.95567 -15.14587 -14.97746 -14.80536 -14.62705 -14.17435 -13.91640 -13.51716 -13.48539 -13.23206 -12.74949 -12.64849 -12.26030 -12.10106 -11.94865 -11.87081 -11.59395 -11.56061 -11.44931 -11.32321 -11.18803 -11.08769 -11.02201 -10.85218 -10.50290 -10.35578 -9.95827 -9.81593 -9.73363 -9.62156 -9.54153 -9.35869 -8.57586 -8.42587 -6.75103 -5.92022 -3.37895 3.00491 3.02490 3.27675 3.34873 3.36391 3.62678 4.02521 4.17566 4.38316 4.53581 4.65243 4.86705 4.92410 4.99828 5.07444 5.20654 5.23202 5.25262 5.26794 5.30924 5.36952 5.38784 5.49910 5.56033 5.76474 5.88676 5.89576 6.09620 6.14092 6.32143 6.43800 6.48964 6.52977 6.66996 6.70412 6.73655 6.75787 6.91175 6.96497 7.07289 7.26004 7.47525 7.56056 7.72241 8.11335 8.37946 8.70862 9.11426 9.73646 10.30095 11.14798 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002774 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.898396 B =10092.840946 C =10891.051427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.284 1.284 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.702 5.702 17 C 0.506 3.494 18 O -0.540 6.540 19 C 0.045 3.955 20 O -0.362 6.362 21 C 0.070 3.930 22 C -0.120 4.120 23 H 0.095 0.905 24 C -0.150 4.150 25 C 0.052 3.948 26 O -0.388 6.388 27 C 0.059 3.941 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.411 0.589 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.392 -7.382 -0.182 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.354 5.354 17 C 0.291 3.709 18 O -0.418 6.418 19 C -0.035 4.035 20 O -0.280 6.280 21 C -0.007 4.007 22 C -0.138 4.138 23 H 0.113 0.887 24 C -0.187 4.187 25 C -0.025 4.025 26 O -0.307 6.307 27 C -0.017 4.017 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.332 -7.829 -1.208 17.258 hybrid contribution 0.084 1.261 1.515 1.973 sum 15.416 -6.568 0.307 16.760 Atomic orbital electron populations 1.22405 0.99778 0.98352 1.02133 1.20800 0.91930 0.87625 0.98064 1.43992 1.74116 1.09713 1.02570 1.19089 1.42138 0.89880 0.88109 0.91752 1.25109 0.98304 0.98226 0.97419 1.70007 1.40544 1.09407 1.33361 0.86462 0.78963 0.79314 0.82517 1.21051 1.21727 1.20936 1.20515 0.90457 0.97144 0.85015 0.88019 1.22114 1.00651 0.99519 0.98041 1.22124 0.86889 1.00722 0.92399 1.45830 1.15053 1.55225 1.19302 1.20106 0.83745 0.79173 0.87914 1.90679 1.81763 1.48471 1.20857 1.22240 0.88618 0.97286 0.95392 1.87995 1.25097 1.75017 1.39901 1.22477 0.85812 0.98918 0.93501 1.22703 0.94299 0.96701 1.00138 0.88661 1.23275 0.96632 0.98493 1.00349 1.23340 0.88508 0.91545 0.99067 1.88409 1.17912 1.32640 1.91784 1.23167 0.89059 0.87208 1.02271 0.95387 0.92910 0.93097 0.94521 0.94533 0.93489 0.90304 0.95026 0.94951 0.92864 0.92763 0.75249 0.90432 0.90276 0.92633 0.92722 0.89525 0.89989 0.89711 0.92111 0.90875 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.00 37.16 0.37 -2.83 16 2 C 0.14 2.81 5.67 -4.04 -0.02 2.79 16 3 N -0.58 -12.68 1.85 -165.66 -0.31 -12.99 16 4 C -0.26 -6.30 9.32 -15.06 -0.14 -6.44 16 5 H 0.06 1.55 7.90 -52.48 -0.41 1.13 16 6 C 0.01 0.23 4.84 -17.43 -0.08 0.15 16 7 N -0.89 -23.10 10.55 55.49 0.59 -22.51 16 8 Si 0.90 19.73 29.59 -169.99 -5.03 14.69 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.18 3.68 1.93 -67.93 -0.13 3.55 16 13 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 14 C -0.14 -2.91 8.10 37.16 0.30 -2.61 16 15 C 0.10 1.98 4.92 -4.05 -0.02 1.96 16 16 N -0.70 -12.40 5.39 -60.30 -0.32 -12.73 16 17 C 0.51 8.87 7.91 -10.98 -0.09 8.79 16 18 O -0.54 -11.53 16.50 -14.36 -0.24 -11.76 16 19 C 0.04 0.59 6.42 36.01 0.23 0.82 16 20 O -0.36 -5.07 9.72 -55.14 -0.54 -5.61 16 21 C 0.07 0.69 5.25 37.16 0.20 0.89 16 22 C -0.12 -1.11 3.29 -88.68 -0.29 -1.40 16 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 24 C -0.15 -1.03 6.62 -24.48 -0.16 -1.19 16 25 C 0.05 0.41 7.78 38.19 0.30 0.71 16 26 O -0.39 -4.47 11.36 -35.23 -0.40 -4.87 16 27 C 0.06 0.65 7.26 37.88 0.27 0.93 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.00 5.94 -51.93 -0.31 0.69 16 31 H 0.04 0.70 6.51 -51.93 -0.34 0.36 16 32 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.26 6.55 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.81 7.41 -51.93 -0.38 1.42 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.61 6.51 -51.93 -0.34 0.27 16 37 H 0.05 1.04 6.85 -51.93 -0.36 0.69 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.41 7.19 7.93 -40.82 -0.32 6.87 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 49 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -29.14 388.54 -8.30 -37.44 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.64 Total: 6.38 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 0.73 Total: 6.10 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.05 Total: -48.23 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.17 Total: -22.24 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.14 -8.30 -37.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155590689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.783 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds