Wall clock time and date at job start Tue Mar 31 2020 10:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46798 * 2 1 4 4 C 1.36936 * 119.99945 * 85.13744 * 3 2 1 5 5 H 1.08004 * 119.99758 * 31.54109 * 4 3 2 6 6 C 1.38810 * 120.00171 * 211.54441 * 4 3 2 7 7 N 1.31628 * 119.99711 * 18.38369 * 6 4 3 8 8 Si 1.86794 * 120.00324 * 198.38392 * 6 4 3 9 9 H 1.48504 * 109.47002 * 59.99930 * 8 6 4 10 10 H 1.48497 * 109.47300 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47191 * 300.00303 * 8 6 4 12 12 C 1.46496 * 119.99851 * 265.40949 * 3 2 1 13 13 H 1.08997 * 109.47164 * 180.43984 * 12 3 2 14 14 C 1.53005 * 109.47030 * 60.44511 * 12 3 2 15 15 C 1.52993 * 109.47519 * 300.44154 * 12 3 2 16 16 N 1.46495 * 109.47040 * 305.00281 * 15 12 3 17 17 C 1.34781 * 120.00108 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00317 * 179.97438 * 17 16 15 20 20 O 1.42902 * 109.47134 * 180.02562 * 19 17 16 21 21 C 1.42905 * 113.99575 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46747 * 179.97438 * 21 20 19 23 23 H 1.09005 * 110.74952 * 57.02135 * 22 21 20 24 24 C 1.55303 * 110.84538 * 180.71031 * 22 21 20 25 25 C 1.54952 * 100.93775 * 152.32526 * 24 22 21 26 26 O 1.43640 * 105.14030 * 323.55510 * 25 24 22 27 27 C 1.43243 * 109.96775 * 24.42667 * 26 25 24 28 28 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47147 * 299.99723 * 1 2 3 30 30 H 1.09006 * 109.47017 * 60.00296 * 1 2 3 31 31 H 1.08998 * 109.47147 * 240.00277 * 2 1 3 32 32 H 1.08993 * 109.46891 * 119.99901 * 2 1 3 33 33 H 0.96999 * 119.99202 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47159 * 59.99716 * 14 12 3 35 35 H 1.09001 * 109.46814 * 179.97438 * 14 12 3 36 36 H 1.09005 * 109.47037 * 299.99661 * 14 12 3 37 37 H 1.09001 * 109.46990 * 65.00049 * 15 12 3 38 38 H 1.08994 * 109.47449 * 184.99811 * 15 12 3 39 39 H 0.96996 * 120.00409 * 359.97438 * 16 15 12 40 40 H 1.09001 * 109.47116 * 300.00434 * 19 17 16 41 41 H 1.09003 * 109.47216 * 60.00304 * 19 17 16 42 42 H 1.09001 * 109.47193 * 299.99889 * 21 20 19 43 43 H 1.08995 * 109.47094 * 59.99982 * 21 20 19 44 44 H 1.09000 * 111.13011 * 270.24257 * 24 22 21 45 45 H 1.09001 * 111.12664 * 34.41158 * 24 22 21 46 46 H 1.09006 * 110.30984 * 204.64080 * 25 24 22 47 47 H 1.08999 * 110.39632 * 82.51913 * 25 24 22 48 48 H 1.08994 * 109.83033 * 238.77327 * 27 26 25 49 49 H 1.09008 * 109.90162 * 117.84131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1517 2.0603 1.1816 5 1 2.4021 1.5260 2.0862 6 6 1.9652 3.4354 1.2169 7 7 1.3215 4.0374 0.2393 8 14 2.6276 4.4314 2.6516 9 1 4.1015 4.2672 2.7295 10 1 2.2998 5.8659 2.4516 11 1 2.0089 3.9530 3.9139 12 6 2.3582 2.0380 -1.2646 13 1 2.7077 3.0511 -1.0655 14 6 1.1186 2.0930 -2.1600 15 6 3.4619 1.2471 -1.9697 16 7 4.6047 1.0921 -1.0664 17 6 5.7014 0.4240 -1.4756 18 8 5.7423 -0.0485 -2.5918 19 6 6.8773 0.2651 -0.5466 20 8 7.9081 -0.4738 -1.2051 21 6 9.0747 -0.6822 -0.4064 22 6 10.1055 -1.4798 -1.2077 23 1 10.3509 -0.9684 -2.1384 24 6 11.3816 -1.7403 -0.3618 25 6 11.8919 -3.0580 -0.9977 26 8 10.7066 -3.8032 -1.3188 27 6 9.5980 -2.9113 -1.4845 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.1915 4.9984 0.2638 34 1 0.3324 2.6566 -1.6577 35 1 1.3714 2.5821 -3.1007 36 1 0.7690 1.0800 -2.3591 37 1 3.0829 0.2638 -2.2481 38 1 3.7767 1.7821 -2.8655 39 1 4.5722 1.4703 -0.1738 40 1 7.2564 1.2485 -0.2688 41 1 6.5626 -0.2695 0.3497 42 1 9.4992 0.2815 -0.1250 43 1 8.8053 -1.2369 0.4924 44 1 12.1072 -0.9367 -0.4877 45 1 11.1337 -1.8820 0.6901 46 1 12.5041 -3.6100 -0.2844 47 1 12.4629 -2.8473 -1.9019 48 1 8.8088 -3.1671 -0.7776 49 1 9.2173 -2.9780 -2.5038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155590689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:59 Heat of formation + Delta-G solvation = -131.958059 kcal Electronic energy + Delta-G solvation = -27073.665330 eV Core-core repulsion = 23228.744700 eV Total energy + Delta-G solvation = -3844.920630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84493 -40.40666 -38.82452 -38.17207 -35.29878 -33.95138 -33.72513 -32.53061 -30.67711 -30.11075 -29.30035 -26.78209 -26.04727 -25.54369 -23.28372 -23.23380 -21.81568 -21.30247 -20.97607 -18.87174 -18.23925 -17.86953 -17.70681 -17.07242 -16.87084 -16.59891 -16.34227 -16.25322 -15.75875 -15.45825 -15.37438 -14.90328 -14.52657 -14.23515 -14.07150 -14.05602 -13.64091 -13.49192 -13.23642 -13.06857 -12.99140 -12.85635 -12.83245 -12.61461 -12.54360 -12.20669 -12.16327 -12.11393 -11.96356 -11.72508 -11.69185 -11.27329 -11.24810 -10.78856 -10.69571 -10.52046 -10.41712 -9.92640 -8.55202 -7.79209 -5.26139 1.53934 1.56903 1.61602 1.66054 1.92468 2.58036 2.87651 3.05061 3.35778 3.48982 3.65492 3.83029 3.84462 3.96727 4.21301 4.23638 4.26157 4.29181 4.33416 4.35657 4.48150 4.53179 4.54523 4.62527 4.74831 4.80041 4.86269 4.88814 4.89525 4.91916 4.92576 4.98670 5.02314 5.10141 5.18056 5.22115 5.35290 5.52701 5.61871 5.76374 5.77699 5.89430 5.99475 6.09080 6.51689 6.71989 7.25705 7.32929 7.95147 8.47171 9.25287 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002774 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.898396 B =10092.840946 C =10891.051427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.589 5.589 4 C -0.260 4.260 5 H 0.065 0.935 6 C -0.034 4.034 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.304 1.304 11 H -0.286 1.286 12 C 0.183 3.817 13 H 0.074 0.926 14 C -0.134 4.134 15 C 0.116 3.884 16 N -0.699 5.699 17 C 0.503 3.497 18 O -0.583 6.583 19 C 0.051 3.949 20 O -0.393 6.393 21 C 0.067 3.933 22 C -0.119 4.119 23 H 0.089 0.911 24 C -0.138 4.138 25 C 0.042 3.958 26 O -0.413 6.413 27 C 0.057 3.943 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.247 0.753 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.414 0.586 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.167 -7.808 1.135 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.015 3.985 3 N -0.311 5.311 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.231 4.231 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.231 1.231 11 H -0.212 1.212 12 C 0.076 3.924 13 H 0.092 0.908 14 C -0.194 4.194 15 C -0.010 4.010 16 N -0.351 5.351 17 C 0.290 3.710 18 O -0.464 6.464 19 C -0.028 4.028 20 O -0.312 6.312 21 C -0.010 4.010 22 C -0.138 4.138 23 H 0.107 0.893 24 C -0.175 4.175 25 C -0.034 4.034 26 O -0.333 6.333 27 C -0.020 4.020 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.110 0.890 46 H 0.120 0.880 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.128 -8.272 0.133 19.021 hybrid contribution -0.458 1.312 1.083 1.762 sum 16.670 -6.960 1.217 18.105 Atomic orbital electron populations 1.22284 0.99225 0.99740 1.00489 1.20876 0.92292 0.86554 0.98739 1.44098 1.74437 1.10267 1.02292 1.19280 1.40906 0.90038 0.88775 0.91709 1.25672 0.98973 0.99141 0.99350 1.70153 1.42035 1.08877 1.34950 0.85581 0.79009 0.77174 0.79972 1.19654 1.23141 1.21193 1.20349 0.91142 0.95929 0.85007 0.90757 1.21970 0.99476 0.99737 0.98173 1.21844 0.86869 0.99954 0.92348 1.45796 1.14947 1.55273 1.19077 1.20875 0.84423 0.77773 0.87923 1.90658 1.82593 1.50171 1.22961 1.22222 0.87096 0.99110 0.94371 1.87963 1.26327 1.75322 1.41555 1.22695 0.84559 1.00255 0.93442 1.22705 0.95325 0.95197 1.00536 0.89281 1.23265 0.95580 0.98436 1.00226 1.23607 0.87575 0.92180 1.00026 1.88379 1.19038 1.33884 1.91976 1.23120 0.89188 0.88623 1.01027 0.92471 0.95204 0.93985 0.93569 0.94020 0.94356 0.93285 0.93639 0.93884 0.93248 0.92864 0.74961 0.87776 0.87973 0.90485 0.91428 0.87317 0.88987 0.88045 0.91471 0.91479 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 10.00 71.98 0.72 -5.14 16 2 C 0.14 5.39 5.67 86.38 0.49 5.88 16 3 N -0.59 -25.30 1.85 -678.03 -1.26 -26.55 16 4 C -0.26 -12.29 9.32 84.03 0.78 -11.51 16 5 H 0.07 3.03 7.90 -2.91 -0.02 3.01 16 6 C -0.03 -1.68 4.84 84.86 0.41 -1.27 16 7 N -0.92 -48.14 10.55 21.65 0.23 -47.91 16 8 Si 0.95 40.28 29.59 68.60 2.03 42.31 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.18 7.63 1.93 44.99 0.09 7.71 16 13 H 0.07 3.57 5.94 -2.39 -0.01 3.55 16 14 C -0.13 -5.42 8.10 71.98 0.58 -4.83 16 15 C 0.12 4.33 4.92 86.38 0.43 4.76 16 16 N -0.70 -23.97 5.39 -463.08 -2.49 -26.46 16 17 C 0.50 17.08 7.91 87.66 0.69 17.77 16 18 O -0.58 -24.80 16.50 16.00 0.26 -24.54 16 19 C 0.05 1.24 6.42 71.24 0.46 1.70 16 20 O -0.39 -10.35 9.72 -129.94 -1.26 -11.62 16 21 C 0.07 1.14 5.25 71.98 0.38 1.52 16 22 C -0.12 -2.01 3.29 -9.53 -0.03 -2.05 16 23 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 24 C -0.14 -1.51 6.62 32.05 0.21 -1.30 16 25 C 0.04 0.58 7.78 72.65 0.56 1.15 16 26 O -0.41 -9.27 11.36 -148.98 -1.69 -10.96 16 27 C 0.06 1.24 7.26 72.45 0.53 1.77 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.61 5.94 -2.38 -0.01 1.60 16 31 H 0.05 1.68 6.51 -2.39 -0.02 1.66 16 32 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 34 H 0.05 2.27 7.41 -2.39 -0.02 2.25 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.60 6.51 -2.38 -0.02 1.59 16 37 H 0.05 1.89 6.85 -2.39 -0.02 1.88 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 13.88 7.93 -92.71 -0.74 13.14 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 0.99 8.07 -2.39 -0.02 0.97 16 44 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 46 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.50 7.76 -2.39 -0.02 1.48 16 49 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -63.33 388.54 2.30 -61.02 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.19 Total: 28.55 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.30 Total: 16.18 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -3.52 Total: -100.93 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -2.69 Total: -47.12 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -63.33 2.30 -61.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155590689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.936 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds