Wall clock time and date at job start Tue Mar 31 2020 10:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99871 * 2 1 4 4 C 1.53002 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47040 * 306.02610 * 4 3 2 6 6 O 1.42894 * 109.47317 * 66.03065 * 4 3 2 7 7 C 1.42901 * 114.00037 * 269.99905 * 6 4 3 8 8 C 1.50697 * 109.46649 * 186.03115 * 4 3 2 9 9 O 1.21286 * 119.99790 * 250.18657 * 8 4 3 10 10 N 1.34781 * 120.00297 * 70.19183 * 8 4 3 11 11 C 1.46931 * 120.62761 * 5.12660 * 10 8 4 12 12 C 1.52761 * 109.00376 * 233.58399 * 11 10 8 13 13 C 1.53045 * 109.38481 * 305.58616 * 12 11 10 14 14 C 1.53041 * 109.53435 * 61.24506 * 13 12 11 15 15 C 1.46923 * 120.62952 * 185.40361 * 10 8 4 16 16 H 1.09002 * 109.58580 * 246.15068 * 15 10 8 17 17 C 1.52994 * 109.58865 * 6.44073 * 15 10 8 18 18 N 1.46501 * 109.47017 * 178.12787 * 17 15 10 19 19 C 1.46508 * 120.00143 * 93.85021 * 18 17 15 20 20 C 1.36930 * 120.00115 * 273.84956 * 18 17 15 21 21 H 1.08004 * 119.99819 * 321.55668 * 20 18 17 22 22 C 1.38815 * 120.00372 * 141.55907 * 20 18 17 23 23 N 1.31613 * 120.00165 * 171.28990 * 22 20 18 24 24 Si 1.86800 * 119.99634 * 351.29185 * 22 20 18 25 25 H 1.48495 * 109.47037 * 88.73457 * 24 22 20 26 26 H 1.48498 * 109.46830 * 208.73427 * 24 22 20 27 27 H 1.48498 * 109.47192 * 328.73413 * 24 22 20 28 28 H 1.08997 * 109.47504 * 300.00324 * 1 2 3 29 29 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47015 * 60.00251 * 1 2 3 31 31 H 1.09004 * 109.47035 * 299.99605 * 3 2 1 32 32 H 1.08996 * 109.47219 * 59.99901 * 3 2 1 33 33 H 1.09001 * 109.47194 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47184 * 299.99905 * 7 6 4 35 35 H 1.08998 * 109.47418 * 59.99664 * 7 6 4 36 36 H 1.09001 * 109.58564 * 353.41511 * 11 10 8 37 37 H 1.08999 * 109.58983 * 113.84533 * 11 10 8 38 38 H 1.08999 * 109.56266 * 185.55008 * 12 11 10 39 39 H 1.09000 * 109.39023 * 65.51337 * 12 11 10 40 40 H 1.08994 * 109.46036 * 301.22438 * 13 12 11 41 41 H 1.08996 * 109.44741 * 181.25374 * 13 12 11 42 42 H 1.08999 * 109.49762 * 178.68922 * 14 13 12 43 43 H 1.08997 * 109.53203 * 58.59851 * 14 13 12 44 44 H 1.09005 * 109.47080 * 298.12692 * 17 15 10 45 45 H 1.08998 * 109.47446 * 58.12701 * 17 15 10 46 46 H 1.09007 * 109.46980 * 59.12534 * 19 18 17 47 47 H 1.08994 * 109.46875 * 179.12444 * 19 18 17 48 48 H 1.09002 * 109.46858 * 299.12932 * 19 18 17 49 49 H 0.96999 * 120.00215 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8502 0.5533 0.8302 6 8 3.9666 0.6017 -1.2320 7 6 4.0480 -0.8247 -1.2026 8 6 4.1477 2.5536 0.1486 9 8 4.7272 3.0640 -0.7866 10 7 4.0515 3.2107 1.3215 11 6 3.4521 2.5622 2.4958 12 6 2.3400 3.4549 3.0436 13 6 2.8985 4.8539 3.3142 14 6 3.4090 5.4629 2.0063 15 6 4.5384 4.5911 1.4483 16 1 5.3900 4.6171 2.1281 17 6 4.9626 5.1136 0.0743 18 7 5.4055 6.5047 0.1964 19 6 6.8262 6.8069 0.3886 20 6 4.4918 7.5225 0.1308 21 1 3.6656 7.4626 -0.5622 22 6 4.6275 8.6312 0.9549 23 7 3.8557 9.6823 0.7764 24 14 5.9055 8.6315 2.3173 25 1 7.1942 9.1443 1.7869 26 1 5.4451 9.5034 3.4277 27 1 6.0931 7.2469 2.8203 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 4.3825 -1.1896 -2.1738 34 1 4.7581 -1.1324 -0.4350 35 1 3.0660 -1.2401 -0.9765 36 1 3.0354 1.5972 2.2074 37 1 4.2134 2.4194 3.2628 38 1 1.9553 3.0310 3.9711 39 1 1.5348 3.5200 2.3118 40 1 3.7196 4.7853 4.0277 41 1 2.1114 5.4854 3.7260 42 1 3.7853 6.4682 2.1957 43 1 2.5944 5.5094 1.2836 44 1 5.7807 4.5041 -0.3095 45 1 4.1171 5.0604 -0.6116 46 1 7.3990 6.4083 -0.4489 47 1 6.9638 7.8868 0.4417 48 1 7.1725 6.3503 1.3158 49 1 3.9502 10.4569 1.3525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158456881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:05 Heat of formation + Delta-G solvation = -75.378775 kcal Electronic energy + Delta-G solvation = -29166.540192 eV Core-core repulsion = 25324.073024 eV Total energy + Delta-G solvation = -3842.467168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62594 -38.60066 -37.44554 -36.67868 -35.74923 -32.84335 -32.11559 -31.09875 -30.14230 -27.37012 -26.83485 -26.14798 -25.76223 -24.60626 -23.53012 -22.35038 -20.73659 -20.40340 -18.79942 -17.45945 -17.07743 -16.78865 -16.43495 -15.95024 -15.68942 -15.29119 -15.16003 -14.56826 -14.53056 -14.35062 -14.15850 -13.91476 -13.45131 -13.19837 -13.14180 -12.91228 -12.74687 -12.54549 -12.21538 -12.14233 -12.00847 -11.82029 -11.57931 -11.33328 -11.31276 -11.05334 -10.69720 -10.47842 -10.30766 -10.20418 -10.01862 -9.99809 -9.85589 -9.73322 -9.51308 -8.97854 -8.43110 -8.25668 -6.70872 -5.90665 -3.38574 2.59030 2.85928 3.32218 3.45077 3.48595 3.53461 3.83334 4.52713 4.57538 4.63058 4.79215 4.80664 4.96749 5.02971 5.09828 5.14347 5.16185 5.26099 5.31236 5.37680 5.38432 5.43065 5.45777 5.49472 5.56565 5.58027 5.69802 5.86346 5.95252 6.03250 6.15579 6.20165 6.38059 6.44007 6.49246 6.62867 6.75081 6.77634 6.80726 6.90625 6.97766 7.19674 7.29933 7.61186 8.14115 8.34635 8.50099 9.05191 9.76636 10.19591 11.25078 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.004310 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.870918 B = 6495.231896 C = 7079.136315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.041 3.959 4 C 0.077 3.923 5 H 0.088 0.912 6 O -0.354 6.354 7 C 0.029 3.971 8 C 0.515 3.485 9 O -0.498 6.498 10 N -0.603 5.603 11 C 0.100 3.900 12 C -0.133 4.133 13 C -0.124 4.124 14 C -0.119 4.119 15 C 0.126 3.874 16 H 0.061 0.939 17 C 0.161 3.839 18 N -0.614 5.614 19 C 0.101 3.899 20 C -0.254 4.254 21 H 0.080 0.920 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.890 3.110 25 H -0.289 1.289 26 H -0.306 1.306 27 H -0.268 1.268 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.021 0.979 47 H 0.060 0.940 48 H 0.013 0.987 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -21.219 4.918 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.037 4.037 4 C 0.015 3.985 5 H 0.106 0.894 6 O -0.271 6.271 7 C -0.068 4.068 8 C 0.300 3.700 9 O -0.371 6.371 10 N -0.339 5.339 11 C -0.024 4.024 12 C -0.171 4.171 13 C -0.161 4.161 14 C -0.157 4.157 15 C 0.022 3.978 16 H 0.079 0.921 17 C 0.035 3.965 18 N -0.339 5.339 19 C -0.044 4.044 20 C -0.384 4.384 21 H 0.097 0.903 22 C -0.172 4.172 23 N -0.557 5.557 24 Si 0.721 3.279 25 H -0.216 1.216 26 H -0.234 1.234 27 H -0.193 1.193 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.079 0.921 48 H 0.031 0.969 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.406 -20.827 4.258 21.710 hybrid contribution 0.288 0.158 1.313 1.353 sum -4.119 -20.669 5.570 21.799 Atomic orbital electron populations 1.22765 0.80642 1.02733 1.00388 1.87820 1.20106 1.27345 1.95549 1.23152 0.92598 0.85539 1.02369 1.21977 0.92467 0.94569 0.89510 0.89439 1.88035 1.87691 1.20156 1.31243 1.22928 1.00965 0.80644 1.02213 1.19977 0.81008 0.85979 0.83055 1.90795 1.40955 1.66033 1.39341 1.48419 1.60569 1.15384 1.09516 1.21771 0.96196 0.95965 0.88436 1.21857 0.97712 0.96744 1.00830 1.21608 1.00399 0.95167 0.98962 1.21955 0.97911 1.00761 0.95113 1.22411 0.95676 0.77424 1.02240 0.92133 1.21559 0.99830 0.83820 0.91263 1.44390 1.01906 1.02197 1.85400 1.21443 0.86114 0.99756 0.97108 1.18880 1.06860 0.96388 1.16228 0.90260 1.25527 0.97227 0.96902 0.97512 1.69755 1.40520 1.05138 1.40299 0.86889 0.81088 0.77476 0.82418 1.21621 1.23445 1.19259 0.93865 0.89549 0.93784 0.91443 0.91308 0.89632 0.94375 0.92400 0.90280 0.91268 0.91208 0.91661 0.92450 0.91876 0.88005 0.91814 0.90963 0.92528 0.96101 0.92141 0.96888 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.07 8.88 -39.02 -0.35 -4.41 16 3 C 0.04 0.47 5.17 37.16 0.19 0.66 16 4 C 0.08 1.01 2.04 -27.88 -0.06 0.95 16 5 H 0.09 0.95 6.80 -51.93 -0.35 0.59 16 6 O -0.35 -5.20 9.90 -59.20 -0.59 -5.78 16 7 C 0.03 0.30 10.71 101.05 1.08 1.39 16 8 C 0.51 8.44 6.88 -10.98 -0.08 8.37 16 9 O -0.50 -10.22 12.08 -14.15 -0.17 -10.39 16 10 N -0.60 -9.21 2.98 -165.48 -0.49 -9.70 16 11 C 0.10 1.11 5.46 -3.93 -0.02 1.09 16 12 C -0.13 -1.48 5.94 -26.83 -0.16 -1.64 16 13 C -0.12 -1.79 5.89 -26.69 -0.16 -1.94 16 14 C -0.12 -2.26 4.46 -26.61 -0.12 -2.38 16 15 C 0.13 2.37 3.21 -67.60 -0.22 2.15 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.16 3.57 3.75 -4.04 -0.02 3.55 16 18 N -0.61 -15.18 2.42 -181.11 -0.44 -15.61 16 19 C 0.10 2.31 8.43 59.85 0.50 2.81 16 20 C -0.25 -7.09 7.95 -15.06 -0.12 -7.21 16 21 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 22 C 0.03 0.78 4.95 -17.43 -0.09 0.69 16 23 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 24 Si 0.89 22.29 23.34 -169.99 -3.97 18.32 16 25 H -0.29 -7.13 6.64 56.52 0.38 -6.76 16 26 H -0.31 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.27 -6.41 6.45 56.52 0.36 -6.04 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.71 5.51 -51.93 -0.29 0.42 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 36 H 0.08 0.71 4.70 -51.93 -0.24 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.32 5.12 -51.93 -0.27 2.05 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.63 6.16 -51.93 -0.32 1.31 16 45 H 0.06 1.36 7.15 -51.93 -0.37 0.98 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.46 4.50 -51.93 -0.23 1.23 16 48 H 0.01 0.28 7.06 -51.93 -0.37 -0.09 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -32.97 362.69 -6.18 -39.14 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.28 Total: 0.17 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 1.86 Total: 9.83 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.16 Total: -52.34 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.10 Total: -20.59 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -3.97 Total: 18.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.97 -6.18 -39.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158456881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.237 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds