Wall clock time and date at job start Tue Mar 31 2020 10:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46829 * 2 1 4 4 C 1.42900 * 113.99762 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46623 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00383 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99790 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00205 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47245 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46472 * 60.02565 * 9 8 7 11 11 O 1.42907 * 109.46904 * 299.97343 * 10 9 8 12 12 C 1.42899 * 113.99635 * 179.97438 * 11 10 9 13 13 C 1.53042 * 109.45947 * 179.97438 * 9 8 7 14 14 C 1.53192 * 109.31216 * 58.65543 * 13 9 8 15 15 N 1.46930 * 108.77834 * 54.63480 * 14 13 9 16 16 C 1.36932 * 120.62872 * 126.36699 * 15 14 13 17 17 H 1.08002 * 120.00663 * 332.45264 * 16 15 14 18 18 C 1.38819 * 119.99763 * 152.17982 * 16 15 14 19 19 N 1.31619 * 119.99653 * 343.16079 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 163.16209 * 18 16 15 21 21 H 1.48498 * 109.47033 * 89.99898 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99748 * 20 18 16 23 23 H 1.48496 * 109.47329 * 330.00182 * 20 18 16 24 24 C 1.46922 * 118.73694 * 306.64373 * 15 14 13 25 25 C 1.52760 * 109.00877 * 53.30539 * 24 15 14 26 26 H 1.08998 * 109.47510 * 300.00318 * 1 2 3 27 27 H 1.08995 * 109.47434 * 60.00648 * 1 2 3 28 28 H 1.09009 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47510 * 239.99682 * 2 1 3 30 30 H 1.09005 * 109.47114 * 119.98899 * 2 1 3 31 31 H 1.08996 * 109.47230 * 59.99535 * 4 3 2 32 32 H 1.08995 * 109.47075 * 299.99375 * 4 3 2 33 33 H 0.97003 * 120.00237 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.47152 * 59.99668 * 8 7 5 35 35 H 1.08995 * 109.46886 * 299.99837 * 8 7 5 36 36 H 1.09001 * 109.47035 * 59.97233 * 10 9 8 37 37 H 1.08991 * 109.47289 * 179.97438 * 10 9 8 38 38 H 1.09006 * 109.46724 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47883 * 299.99890 * 12 11 10 40 40 H 1.09002 * 109.47085 * 60.00353 * 12 11 10 41 41 H 1.09002 * 109.49976 * 298.70465 * 13 9 8 42 42 H 1.09004 * 109.52502 * 178.62040 * 13 9 8 43 43 H 1.08997 * 109.58711 * 294.84701 * 14 13 9 44 44 H 1.09004 * 109.70548 * 174.49237 * 14 13 9 45 45 H 0.97007 * 119.99830 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.58958 * 173.14351 * 24 15 14 47 47 H 1.09005 * 109.58698 * 293.56931 * 24 15 14 48 48 H 1.08996 * 109.56719 * 185.54717 * 25 24 15 49 49 H 1.09007 * 109.38352 * 65.51663 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8192 2.9163 -0.0012 6 8 2.9608 3.7730 -0.0006 7 7 5.1207 3.2665 -0.0013 8 6 5.4984 4.6820 -0.0012 9 6 7.0236 4.8028 -0.0020 10 6 7.5882 4.1248 -1.2520 11 8 7.2202 2.7440 -1.2522 12 6 7.6998 2.0149 -2.3837 13 6 7.4179 6.2816 -0.0026 14 6 6.8223 6.9653 1.2321 15 7 7.2454 6.2285 2.4309 16 6 7.8609 6.8776 3.4677 17 1 8.4321 7.7748 3.2802 18 6 7.7459 6.3855 4.7606 19 7 6.8024 5.5154 5.0521 20 14 8.9303 6.9583 6.0867 21 1 8.3757 8.1598 6.7604 22 1 9.1186 5.8743 7.0840 23 1 10.2382 7.2962 5.4700 24 6 7.0010 4.7811 2.4934 25 6 7.5895 4.1229 1.2468 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8332 0.9768 -0.8907 32 1 3.8339 0.9767 0.8892 33 1 5.8074 2.5813 -0.0006 34 1 5.0956 5.1655 0.8888 35 1 5.0956 5.1654 -0.8912 36 1 7.1844 4.6086 -2.1414 37 1 8.6747 4.2113 -1.2529 38 1 7.3789 0.9758 -2.3090 39 1 7.2981 2.4549 -3.2964 40 1 8.7887 2.0575 -2.4085 41 1 7.0343 6.7600 -0.9038 42 1 8.5041 6.3691 0.0216 43 1 5.7345 6.9589 1.1643 44 1 7.1787 7.9937 1.2906 45 1 6.7223 5.1712 5.9555 46 1 7.4774 4.3681 3.3825 47 1 5.9279 4.5929 2.5304 48 1 7.3283 3.0647 1.2349 49 1 8.6743 4.2296 1.2592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162085365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:35 Heat of formation + Delta-G solvation = -104.855455 kcal Electronic energy + Delta-G solvation = -28253.762174 eV Core-core repulsion = 24410.016801 eV Total energy + Delta-G solvation = -3843.745373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00318 -38.81115 -37.44504 -37.08592 -34.44605 -32.99993 -31.61619 -30.90193 -29.96184 -28.15307 -27.67716 -26.01955 -24.98518 -23.84093 -22.89655 -22.26601 -20.87955 -20.15797 -18.45796 -17.15132 -16.90357 -16.44578 -16.32385 -16.01623 -15.73833 -15.50465 -15.12563 -14.72268 -14.56062 -14.08205 -13.81800 -13.62926 -13.37833 -13.06005 -12.95579 -12.70828 -12.66493 -12.54582 -12.21371 -11.91065 -11.65182 -11.47325 -11.43195 -11.33053 -11.24206 -10.90712 -10.69336 -10.53248 -10.24515 -10.16940 -9.89147 -9.75738 -9.74323 -9.51921 -9.39319 -9.38358 -8.54658 -8.40033 -6.62430 -5.75303 -3.17563 2.97581 3.02770 3.39036 3.46101 3.47930 3.66312 4.18298 4.51970 4.87953 4.92433 4.96180 5.02845 5.11894 5.15747 5.20012 5.22919 5.24716 5.29195 5.37335 5.43598 5.50054 5.52464 5.53175 5.57868 5.67564 5.72814 5.75864 5.97868 6.04103 6.07512 6.25162 6.39025 6.41174 6.61791 6.64684 6.72572 6.83065 6.89748 6.98428 7.03715 7.10719 7.40617 7.71441 7.82414 8.00825 8.48007 8.65360 9.24564 9.88086 10.44741 11.32996 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003878 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.648487 B = 7217.782556 C = 8565.400326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.047 3.953 5 C 0.507 3.493 6 O -0.532 6.532 7 N -0.707 5.707 8 C 0.134 3.866 9 C -0.059 4.059 10 C 0.072 3.928 11 O -0.392 6.392 12 C 0.033 3.967 13 C -0.119 4.119 14 C 0.143 3.857 15 N -0.591 5.591 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.170 3.830 25 C -0.125 4.125 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.023 0.977 44 H 0.056 0.944 45 H 0.253 0.747 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -11.999 -15.165 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.282 6.282 4 C -0.033 4.033 5 C 0.292 3.708 6 O -0.408 6.408 7 N -0.365 5.365 8 C 0.011 3.989 9 C -0.060 4.060 10 C -0.004 4.004 11 O -0.311 6.311 12 C -0.063 4.063 13 C -0.159 4.159 14 C 0.016 3.984 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.044 3.956 25 C -0.164 4.164 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.379 -11.374 -14.839 18.847 hybrid contribution 1.351 -0.315 0.419 1.449 sum -1.028 -11.689 -14.420 18.591 Atomic orbital electron populations 1.21725 0.93568 1.02023 1.03484 1.22524 0.95886 0.83735 1.00028 1.88033 1.18857 1.25937 1.95395 1.22176 0.83497 0.95436 1.02235 1.20121 0.83142 0.90170 0.77387 1.90709 1.49657 1.51676 1.48737 1.46099 1.06653 1.09501 1.74281 1.21438 0.93727 0.81356 1.02390 1.20810 0.94143 0.96432 0.94581 1.22769 0.98629 0.80910 0.98092 1.87557 1.76742 1.22227 1.44535 1.22697 0.98366 0.96599 0.88666 1.21986 1.01428 0.92766 0.99699 1.20935 0.96091 0.94914 0.86453 1.44025 1.68893 1.02897 1.15552 1.19157 1.23768 1.09657 0.85670 0.91745 1.25040 0.97554 1.00015 0.97014 1.70045 1.31086 1.34099 1.19224 0.86329 0.81073 0.77799 0.81746 1.21442 1.21625 1.20577 1.20718 0.97144 0.83265 0.94446 1.22107 1.00214 0.98328 0.95783 0.91607 0.91794 0.91151 0.93445 0.93208 0.90754 0.90403 0.75090 0.89747 0.92641 0.93565 0.93095 0.89954 0.94359 0.94157 0.92692 0.91560 0.95961 0.92559 0.93680 0.89601 0.96044 0.92724 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.56 6.66 37.16 0.25 0.81 16 3 O -0.36 -5.36 9.88 -55.14 -0.54 -5.90 16 4 C 0.05 0.61 6.42 36.00 0.23 0.84 16 5 C 0.51 8.68 7.91 -10.99 -0.09 8.59 16 6 O -0.53 -11.56 16.50 -14.35 -0.24 -11.79 16 7 N -0.71 -11.10 4.62 -60.30 -0.28 -11.37 16 8 C 0.13 2.30 3.80 -4.04 -0.02 2.28 16 9 C -0.06 -0.93 0.51 -154.47 -0.08 -1.00 16 10 C 0.07 0.91 4.80 37.16 0.18 1.09 16 11 O -0.39 -4.64 6.73 -35.23 -0.24 -4.87 16 12 C 0.03 0.29 11.01 101.05 1.11 1.40 16 13 C -0.12 -1.93 4.90 -26.61 -0.13 -2.06 16 14 C 0.14 2.92 6.05 -3.71 -0.02 2.89 16 15 N -0.59 -14.52 3.00 -172.58 -0.52 -15.04 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.26 11.18 55.49 0.62 -25.64 16 20 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.17 3.97 4.81 -3.93 -0.02 3.95 16 25 C -0.13 -2.27 4.57 -26.83 -0.12 -2.39 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.41 5.69 4.71 -40.82 -0.19 5.50 16 34 H 0.08 1.76 4.99 -51.93 -0.26 1.50 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.09 2.28 6.05 -51.93 -0.31 1.96 16 47 H 0.02 0.55 6.70 -51.93 -0.35 0.20 16 48 H 0.05 0.92 6.50 -51.93 -0.34 0.58 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -33.40 379.10 -7.59 -40.98 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.52 Total: 2.90 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 1.45 Total: 8.38 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.18 Total: -52.06 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.02 Total: -22.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.40 -7.59 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162085365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.871 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds