Wall clock time and date at job start Tue Mar 31 2020 10:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47350 * 2 1 4 4 C 1.42901 * 114.00050 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.57623 * 29.83963 * 4 3 2 6 6 C 1.53104 * 109.44843 * 269.63715 * 4 3 2 7 7 O 1.42907 * 109.48891 * 297.61307 * 6 4 3 8 8 C 1.42900 * 114.09679 * 298.89335 * 7 6 4 9 9 C 1.53094 * 109.41570 * 61.15456 * 8 7 6 10 10 C 1.53171 * 109.52271 * 150.00261 * 4 3 2 11 11 H 1.09001 * 109.54502 * 182.87714 * 10 4 3 12 12 C 1.53004 * 109.54428 * 303.05535 * 10 4 3 13 13 C 1.50700 * 109.47208 * 184.82250 * 12 10 4 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 N 1.46509 * 109.47304 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99887 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99775 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47235 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47420 * 119.99427 * 24 22 20 27 27 H 1.48497 * 109.47502 * 239.99439 * 24 22 20 28 28 H 1.08999 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46833 * 300.00126 * 1 2 3 30 30 H 1.09002 * 109.46953 * 59.99616 * 1 2 3 31 31 H 1.09004 * 109.46762 * 240.00371 * 2 1 3 32 32 H 1.09002 * 109.46953 * 120.00384 * 2 1 3 33 33 H 1.09006 * 109.40363 * 177.63710 * 6 4 3 34 34 H 1.09001 * 109.49734 * 57.65226 * 6 4 3 35 35 H 1.09003 * 109.48076 * 301.17467 * 8 7 6 36 36 H 1.08998 * 109.47857 * 181.14230 * 8 7 6 37 37 H 1.09004 * 109.52105 * 182.48476 * 9 8 7 38 38 H 1.09002 * 109.52178 * 62.30165 * 9 8 7 39 39 H 1.09009 * 109.46730 * 64.82156 * 12 10 4 40 40 H 1.08998 * 109.46846 * 304.82700 * 12 10 4 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09009 * 109.47378 * 299.99899 * 17 16 15 45 45 H 1.08993 * 109.47209 * 59.99808 * 17 16 15 46 46 H 1.08995 * 109.47215 * 299.99822 * 18 17 16 47 47 H 1.09001 * 109.47513 * 60.00266 * 18 17 16 48 48 H 0.96993 * 119.99778 * 359.97438 * 19 18 17 49 49 H 0.96993 * 120.00131 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8652 0.6009 -0.5119 6 6 3.9390 1.5092 1.4429 7 8 3.4161 2.6693 2.0932 8 6 3.8086 3.9035 1.4892 9 6 3.2934 3.9515 0.0484 10 6 3.8423 2.7469 -0.7223 11 1 4.9296 2.8079 -0.7679 12 6 3.2700 2.7432 -2.1413 13 6 3.7724 3.9515 -2.8888 14 8 4.5146 4.7384 -2.3403 15 7 3.3919 4.1609 -4.1646 16 6 3.8755 5.3387 -4.8893 17 6 3.2992 5.3376 -6.3066 18 6 3.8048 6.5673 -7.0636 19 7 3.2525 6.5666 -8.4206 20 6 3.5685 7.5772 -9.2890 21 1 4.2245 8.3749 -8.9734 22 6 3.0448 7.5767 -10.5745 23 7 2.2449 6.6048 -10.9590 24 14 3.4753 8.9556 -11.7588 25 1 4.3851 9.9186 -11.0878 26 1 4.1488 8.3888 -12.9549 27 1 2.2339 9.6561 -12.1753 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 5.0282 1.5529 1.4421 34 1 3.6115 0.6157 1.9745 35 1 4.8960 3.9784 1.4890 36 1 3.3868 4.7348 2.0540 37 1 3.6292 4.8726 -0.4280 38 1 2.2039 3.9174 0.0498 39 1 2.1813 2.7719 -2.0940 40 1 3.5875 1.8379 -2.6587 41 1 2.7979 3.5316 -4.6031 42 1 3.5576 6.2417 -4.3682 43 1 4.9640 5.3125 -4.9400 44 1 3.6174 4.4345 -6.8276 45 1 2.2108 5.3635 -6.2563 46 1 3.4869 7.4705 -6.5430 47 1 4.8933 6.5409 -7.1141 48 1 2.6636 5.8499 -8.7042 49 1 1.8793 6.6043 -11.8574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162792345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:39 Heat of formation + Delta-G solvation = -137.666984 kcal Electronic energy + Delta-G solvation = -26270.952393 eV Core-core repulsion = 22425.784206 eV Total energy + Delta-G solvation = -3845.168188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58578 -39.36901 -37.47712 -36.13863 -34.59968 -34.26384 -32.04844 -31.75403 -30.40789 -29.83069 -28.65198 -25.41466 -24.03566 -23.63300 -23.08866 -22.37808 -21.22511 -20.47372 -20.01888 -17.38432 -17.06657 -16.88535 -16.70487 -16.20854 -16.11576 -15.77905 -15.57175 -15.08351 -14.73474 -14.57536 -14.46114 -14.03910 -13.51058 -13.30958 -13.19360 -13.03592 -12.86818 -12.75539 -12.50474 -12.42295 -12.03785 -11.75574 -11.64108 -11.57385 -11.28435 -11.02269 -10.96153 -10.91761 -10.77803 -10.62968 -10.60396 -10.28256 -10.06658 -9.84329 -9.70599 -9.36301 -9.03678 -8.89827 -6.94893 -5.78712 -3.07648 2.59431 3.13143 3.22095 3.42643 3.48438 3.50711 3.68486 4.27314 4.34326 4.48213 4.55619 4.58052 4.68759 4.79736 4.85533 4.97374 4.97965 5.02811 5.08885 5.12087 5.18591 5.24125 5.29843 5.33050 5.39687 5.47419 5.55958 5.56246 5.61811 5.64636 5.73362 5.79053 5.93172 5.99411 6.05307 6.15398 6.18419 6.30645 6.47173 6.77387 6.77556 6.81699 7.02478 7.46874 7.69396 8.18622 8.40300 9.51460 10.08491 10.43167 11.44386 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.001903 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.905943 B =14713.587654 C =15513.623999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.059 3.941 5 H 0.070 0.930 6 C 0.042 3.958 7 O -0.374 6.374 8 C 0.061 3.939 9 C -0.151 4.151 10 C -0.067 4.067 11 H 0.090 0.910 12 C -0.133 4.133 13 C 0.511 3.489 14 O -0.542 6.542 15 N -0.729 5.729 16 C 0.122 3.878 17 C -0.138 4.138 18 C 0.156 3.844 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.072 0.928 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.401 0.599 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.022 0.978 47 H 0.021 0.979 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -16.382 26.456 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.001 3.999 5 H 0.087 0.913 6 C -0.035 4.035 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.189 4.189 10 C -0.086 4.086 11 H 0.108 0.892 12 C -0.173 4.173 13 C 0.297 3.703 14 O -0.420 6.420 15 N -0.380 5.380 16 C -0.002 4.002 17 C -0.176 4.176 18 C 0.028 3.972 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.090 0.910 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.235 0.765 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.787 -15.486 26.938 31.082 hybrid contribution 0.023 -0.139 -1.431 1.437 sum 0.810 -15.625 25.507 29.923 Atomic orbital electron populations 1.21727 0.93642 1.02162 1.03290 1.22521 0.95798 0.84117 0.99733 1.88003 1.19748 1.25835 1.94918 1.22826 0.82613 0.98309 0.96201 0.91255 1.23020 0.97738 0.89656 0.93083 1.87946 1.74092 1.13625 1.53609 1.22612 0.98714 0.86428 0.93770 1.22290 1.01848 0.99344 0.95392 1.21034 1.00743 0.93911 0.92872 0.89189 1.21649 1.03389 0.96793 0.95461 1.20656 0.80631 0.87319 0.81685 1.90662 1.36493 1.47365 1.67493 1.46127 1.50911 1.27476 1.13461 1.21346 0.99260 0.87549 0.92001 1.21943 1.01242 1.00815 0.93579 1.20523 0.96157 0.93851 0.86665 1.42351 1.57821 1.29197 1.08466 1.19296 1.23488 1.01542 0.92700 0.91025 1.24764 1.00135 0.98629 0.97645 1.69669 1.36581 1.33222 1.18852 0.86088 0.77504 0.81332 0.81107 1.20500 1.21842 1.21834 0.91246 0.91776 0.91782 0.93502 0.93641 0.92376 0.89000 0.93286 0.88871 0.88814 0.90758 0.87991 0.89192 0.76544 0.91410 0.91452 0.91353 0.91307 0.96055 0.96079 0.78310 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.05 0.35 6.47 37.16 0.24 0.59 16 3 O -0.37 -3.17 8.72 -42.62 -0.37 -3.54 16 4 C 0.06 0.44 2.44 -26.59 -0.06 0.38 16 5 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 6 C 0.04 0.33 6.48 37.21 0.24 0.57 16 7 O -0.37 -3.88 10.70 -42.62 -0.46 -4.34 16 8 C 0.06 0.57 6.84 37.21 0.25 0.82 16 9 C -0.15 -1.52 4.97 -26.59 -0.13 -1.65 16 10 C -0.07 -0.59 1.75 -90.44 -0.16 -0.74 16 11 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 12 C -0.13 -1.12 4.93 -27.88 -0.14 -1.26 16 13 C 0.51 5.95 7.57 -10.98 -0.08 5.87 16 14 O -0.54 -8.13 13.99 5.55 0.08 -8.05 16 15 N -0.73 -8.09 5.56 -60.30 -0.33 -8.43 16 16 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 17 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16 18 C 0.16 3.12 6.26 -4.04 -0.03 3.09 16 19 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 20 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 24 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.05 0.25 7.86 -51.93 -0.41 -0.15 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.60 7.86 -51.93 -0.41 0.19 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.10 6.05 -51.93 -0.31 0.79 16 38 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 39 H 0.10 0.84 7.77 -51.92 -0.40 0.43 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 3.50 8.47 -40.82 -0.35 3.15 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.38 10.16 7.67 -40.82 -0.31 9.84 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -33.79 392.43 -8.58 -42.37 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.88 Total: 6.20 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 0.10 Total: -0.95 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.05 Total: -55.12 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.75 Total: -15.93 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.79 -8.58 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162792345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.295 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds