Wall clock time and date at job start Tue Mar 31 2020 10:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47350 * 2 1 4 4 C 1.42901 * 114.00050 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.57623 * 29.83963 * 4 3 2 6 6 C 1.53104 * 109.44843 * 269.63715 * 4 3 2 7 7 O 1.42907 * 109.48891 * 297.61307 * 6 4 3 8 8 C 1.42900 * 114.09679 * 298.89335 * 7 6 4 9 9 C 1.53094 * 109.41570 * 61.15456 * 8 7 6 10 10 C 1.53171 * 109.52271 * 150.00261 * 4 3 2 11 11 H 1.09001 * 109.54502 * 182.87714 * 10 4 3 12 12 C 1.53004 * 109.54428 * 303.05535 * 10 4 3 13 13 C 1.50700 * 109.47208 * 184.82250 * 12 10 4 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 N 1.46509 * 109.47304 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99887 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99775 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47235 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47420 * 119.99427 * 24 22 20 27 27 H 1.48497 * 109.47502 * 239.99439 * 24 22 20 28 28 H 1.08999 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46833 * 300.00126 * 1 2 3 30 30 H 1.09002 * 109.46953 * 59.99616 * 1 2 3 31 31 H 1.09004 * 109.46762 * 240.00371 * 2 1 3 32 32 H 1.09002 * 109.46953 * 120.00384 * 2 1 3 33 33 H 1.09006 * 109.40363 * 177.63710 * 6 4 3 34 34 H 1.09001 * 109.49734 * 57.65226 * 6 4 3 35 35 H 1.09003 * 109.48076 * 301.17467 * 8 7 6 36 36 H 1.08998 * 109.47857 * 181.14230 * 8 7 6 37 37 H 1.09004 * 109.52105 * 182.48476 * 9 8 7 38 38 H 1.09002 * 109.52178 * 62.30165 * 9 8 7 39 39 H 1.09009 * 109.46730 * 64.82156 * 12 10 4 40 40 H 1.08998 * 109.46846 * 304.82700 * 12 10 4 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09009 * 109.47378 * 299.99899 * 17 16 15 45 45 H 1.08993 * 109.47209 * 59.99808 * 17 16 15 46 46 H 1.08995 * 109.47215 * 299.99822 * 18 17 16 47 47 H 1.09001 * 109.47513 * 60.00266 * 18 17 16 48 48 H 0.96993 * 119.99778 * 359.97438 * 19 18 17 49 49 H 0.96993 * 120.00131 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8652 0.6009 -0.5119 6 6 3.9390 1.5092 1.4429 7 8 3.4161 2.6693 2.0932 8 6 3.8086 3.9035 1.4892 9 6 3.2934 3.9515 0.0484 10 6 3.8423 2.7469 -0.7223 11 1 4.9296 2.8079 -0.7679 12 6 3.2700 2.7432 -2.1413 13 6 3.7724 3.9515 -2.8888 14 8 4.5146 4.7384 -2.3403 15 7 3.3919 4.1609 -4.1646 16 6 3.8755 5.3387 -4.8893 17 6 3.2992 5.3376 -6.3066 18 6 3.8048 6.5673 -7.0636 19 7 3.2525 6.5666 -8.4206 20 6 3.5685 7.5772 -9.2890 21 1 4.2245 8.3749 -8.9734 22 6 3.0448 7.5767 -10.5745 23 7 2.2449 6.6048 -10.9590 24 14 3.4753 8.9556 -11.7588 25 1 4.3851 9.9186 -11.0878 26 1 4.1488 8.3888 -12.9549 27 1 2.2339 9.6561 -12.1753 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 5.0282 1.5529 1.4421 34 1 3.6115 0.6157 1.9745 35 1 4.8960 3.9784 1.4890 36 1 3.3868 4.7348 2.0540 37 1 3.6292 4.8726 -0.4280 38 1 2.2039 3.9174 0.0498 39 1 2.1813 2.7719 -2.0940 40 1 3.5875 1.8379 -2.6587 41 1 2.7979 3.5316 -4.6031 42 1 3.5576 6.2417 -4.3682 43 1 4.9640 5.3125 -4.9400 44 1 3.6174 4.4345 -6.8276 45 1 2.2108 5.3635 -6.2563 46 1 3.4869 7.4705 -6.5430 47 1 4.8933 6.5409 -7.1141 48 1 2.6636 5.8499 -8.7042 49 1 1.8793 6.6043 -11.8574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162792345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:38 Heat of formation + Delta-G solvation = -161.604683 kcal Electronic energy + Delta-G solvation = -26271.990410 eV Core-core repulsion = 22425.784206 eV Total energy + Delta-G solvation = -3846.206204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34285 -40.21562 -38.08525 -37.55136 -35.96298 -35.19229 -33.76619 -32.29768 -31.59305 -30.81461 -29.59007 -26.95324 -25.07327 -24.40935 -23.97796 -23.44501 -22.57604 -21.34883 -20.83033 -19.19444 -18.02928 -17.63690 -17.42127 -17.13125 -16.95488 -16.64255 -16.56721 -16.32278 -15.85736 -15.64239 -15.31329 -15.22925 -14.97930 -14.66729 -14.33878 -13.89658 -13.76031 -13.60271 -13.31679 -13.17159 -13.05428 -12.86033 -12.71087 -12.56072 -12.42612 -12.35301 -12.11174 -12.05457 -12.04979 -11.95731 -11.79493 -11.65302 -11.25769 -10.97009 -10.90571 -10.75522 -10.07520 -9.98257 -9.03360 -7.98028 -5.27290 1.47206 1.47823 1.58243 1.68120 2.20693 2.55450 2.68375 3.06225 3.35885 3.61300 3.70785 3.76787 3.81962 3.91190 4.08003 4.13789 4.24501 4.28593 4.29466 4.36917 4.43726 4.44677 4.49885 4.54882 4.56616 4.59289 4.72084 4.72684 4.77078 4.81243 4.86664 4.90672 4.97899 5.06349 5.10602 5.18538 5.27953 5.30741 5.33540 5.35701 5.47816 5.50296 6.18061 6.25014 6.45362 6.59240 7.29176 7.31295 8.05814 8.29714 9.25677 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.001903 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.905943 B =14713.587654 C =15513.623999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.387 6.387 4 C 0.063 3.937 5 H 0.095 0.905 6 C 0.035 3.965 7 O -0.395 6.395 8 C 0.062 3.938 9 C -0.146 4.146 10 C -0.067 4.067 11 H 0.086 0.914 12 C -0.122 4.122 13 C 0.508 3.492 14 O -0.578 6.578 15 N -0.721 5.721 16 C 0.134 3.866 17 C -0.118 4.118 18 C 0.152 3.848 19 N -0.747 5.747 20 C -0.249 4.249 21 H 0.075 0.925 22 C -0.077 4.077 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.414 0.586 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.376 0.624 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -17.639 26.887 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.306 6.306 4 C 0.005 3.995 5 H 0.112 0.888 6 C -0.042 4.042 7 O -0.314 6.314 8 C -0.015 4.015 9 C -0.183 4.183 10 C -0.086 4.086 11 H 0.104 0.896 12 C -0.162 4.162 13 C 0.296 3.704 14 O -0.459 6.459 15 N -0.373 5.373 16 C 0.009 3.991 17 C -0.156 4.156 18 C 0.025 3.975 19 N -0.390 5.390 20 C -0.380 4.380 21 H 0.093 0.907 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.219 1.219 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.251 0.749 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.208 0.792 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.167 -16.760 27.397 32.138 hybrid contribution -0.086 0.238 -1.488 1.510 sum 1.080 -16.522 25.909 30.747 Atomic orbital electron populations 1.21743 0.93702 1.02985 1.02349 1.22678 0.95816 0.83321 1.00834 1.87986 1.20296 1.27323 1.95034 1.22815 0.82419 0.98242 0.96047 0.88755 1.23241 0.98548 0.89111 0.93298 1.87912 1.74664 1.14438 1.54367 1.22610 0.98992 0.86542 0.93326 1.22170 1.00948 0.99200 0.96010 1.21031 1.00449 0.94113 0.93029 0.89561 1.21631 1.03481 0.96103 0.94977 1.21244 0.79870 0.87759 0.81497 1.90655 1.38211 1.48788 1.68216 1.46007 1.50945 1.26961 1.13414 1.21043 0.98751 0.88312 0.90976 1.21698 1.01300 0.98701 0.93927 1.20687 0.96015 0.96103 0.84728 1.42558 1.57897 1.28384 1.10185 1.19684 1.22905 1.02057 0.93382 0.90713 1.25605 1.00618 1.01201 0.99461 1.69811 1.37922 1.35084 1.19093 0.85045 0.77212 0.78634 0.78689 1.19148 1.21820 1.21876 0.89564 0.92980 0.92432 0.92000 0.92839 0.91133 0.87777 0.92743 0.88671 0.90912 0.92014 0.87445 0.86428 0.74907 0.92318 0.92056 0.90732 0.90922 0.96138 0.96000 0.79228 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.52 6.47 71.98 0.47 0.98 16 3 O -0.39 -5.99 8.72 -141.91 -1.24 -7.22 16 4 C 0.06 0.80 2.44 30.69 0.07 0.88 16 5 H 0.09 0.75 7.79 -2.39 -0.02 0.73 16 6 C 0.03 0.47 6.48 72.02 0.47 0.94 16 7 O -0.39 -7.88 10.70 -141.91 -1.52 -9.40 16 8 C 0.06 1.14 6.84 72.01 0.49 1.63 16 9 C -0.15 -2.92 4.97 30.68 0.15 -2.76 16 10 C -0.07 -1.09 1.75 -10.68 -0.02 -1.11 16 11 H 0.09 1.48 7.96 -2.39 -0.02 1.46 16 12 C -0.12 -1.81 4.93 29.85 0.15 -1.67 16 13 C 0.51 11.23 7.57 87.66 0.66 11.89 16 14 O -0.58 -17.21 13.99 -3.04 -0.04 -17.25 16 15 N -0.72 -14.89 5.56 -463.07 -2.57 -17.46 16 16 C 0.13 3.46 5.67 86.38 0.49 3.95 16 17 C -0.12 -3.45 5.44 30.59 0.17 -3.29 16 18 C 0.15 5.98 6.26 86.38 0.54 6.52 16 19 N -0.75 -38.08 5.60 -343.44 -1.92 -40.01 16 20 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 23 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 24 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.46 8.09 -2.38 -0.02 0.44 16 32 H 0.05 0.47 7.86 -2.39 -0.02 0.45 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.10 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.77 6.05 -2.39 -0.01 1.75 16 38 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 39 H 0.11 1.54 7.77 -2.38 -0.02 1.53 16 40 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 6.30 8.47 -92.71 -0.79 5.51 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.38 20.00 7.67 -92.71 -0.71 19.29 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.27 392.43 0.14 -72.13 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.57 Total: 29.74 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.69 Total: 0.00 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.21 Total: -116.27 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -2.80 Total: -33.87 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.27 0.14 -72.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162792345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.470 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds