Wall clock time and date at job start Tue Mar 31 2020 10:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47169 * 2 1 4 4 C 1.42902 * 114.00067 * 176.61045 * 3 2 1 5 5 H 1.09000 * 109.47125 * 3.91941 * 4 3 2 6 6 C 1.50701 * 109.47141 * 123.91808 * 4 3 2 7 7 O 1.21286 * 119.99833 * 4.99822 * 6 4 3 8 8 N 1.34778 * 120.00417 * 185.00194 * 6 4 3 9 9 C 1.46497 * 120.00235 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46879 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46966 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00005 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00169 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99889 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47204 * 60.00012 * 17 15 13 19 19 H 1.48504 * 109.47244 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47012 * 300.00089 * 17 15 13 21 21 C 1.53002 * 109.47399 * 243.91734 * 4 3 2 22 22 C 1.53175 * 109.61478 * 305.74060 * 21 4 3 23 23 C 1.53095 * 109.16236 * 176.89096 * 22 21 4 24 24 O 1.42902 * 109.41436 * 302.39159 * 23 22 21 25 25 C 1.42905 * 114.10086 * 61.15681 * 24 23 22 26 26 C 1.53096 * 109.41253 * 298.84446 * 25 24 23 27 27 H 1.08998 * 109.47145 * 60.00197 * 1 2 3 28 28 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47397 * 300.00541 * 1 2 3 30 30 H 1.08996 * 109.47397 * 239.99459 * 2 1 3 31 31 H 1.08996 * 109.46632 * 119.99822 * 2 1 3 32 32 H 0.97008 * 119.99446 * 359.97438 * 8 6 4 33 33 H 1.09009 * 109.46681 * 299.99596 * 9 8 6 34 34 H 1.08998 * 109.47477 * 59.99651 * 9 8 6 35 35 H 1.08999 * 109.47099 * 299.99182 * 10 9 8 36 36 H 1.09002 * 109.47423 * 59.99958 * 10 9 8 37 37 H 1.08999 * 109.47198 * 300.00002 * 11 10 9 38 38 H 1.09002 * 109.46849 * 59.99895 * 11 10 9 39 39 H 0.97005 * 120.00053 * 0.02562 * 12 11 10 40 40 H 0.96996 * 119.99850 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.54175 * 185.51443 * 21 4 3 42 42 H 1.09000 * 109.52031 * 296.79125 * 22 21 4 43 43 H 1.09000 * 109.52570 * 56.98601 * 22 21 4 44 44 H 1.08995 * 109.48246 * 182.40892 * 23 22 21 45 45 H 1.08997 * 109.47903 * 62.36961 * 23 22 21 46 46 H 1.09000 * 109.48278 * 178.86484 * 25 24 23 47 47 H 1.08999 * 109.47645 * 58.82377 * 25 24 23 48 48 H 1.09004 * 109.51962 * 297.70057 * 26 25 24 49 49 H 1.08997 * 109.52119 * 177.51487 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4287 1.4608 0.0772 5 1 3.8746 0.4665 0.0513 6 6 3.9324 2.2677 -1.0917 7 8 3.1452 2.7789 -1.8598 8 7 5.2576 2.4212 -1.2837 9 6 5.7471 3.2060 -2.4197 10 6 7.2770 3.2222 -2.4068 11 6 7.7883 4.0413 -3.5936 12 7 9.2531 4.0573 -3.5810 13 6 9.9389 4.7341 -4.5542 14 1 9.3998 5.2564 -5.3307 15 6 11.3269 4.7497 -4.5419 16 7 11.9838 4.1136 -3.5952 17 14 12.2623 5.6735 -5.8689 18 1 11.8870 7.1097 -5.8304 19 1 13.7219 5.5362 -5.6324 20 1 11.9215 5.1084 -7.1993 21 6 3.8146 2.1590 1.3828 22 6 3.0759 3.4967 1.4883 23 6 3.4089 4.1500 2.8323 24 8 3.0471 3.2641 3.8936 25 6 3.7413 2.0152 3.8735 26 6 3.4217 1.2762 2.5714 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 5.8871 2.0126 -0.6691 33 1 5.3967 2.7573 -3.3493 34 1 5.3719 4.2266 -2.3449 35 1 7.6278 3.6707 -1.4774 36 1 7.6518 2.2014 -2.4820 37 1 7.4375 3.5926 -4.5230 38 1 7.4135 5.0621 -3.5189 39 1 9.7374 3.5885 -2.8834 40 1 12.9537 4.1242 -3.5869 41 1 4.8903 2.3341 1.3985 42 1 3.3917 4.1521 0.6766 43 1 2.0014 3.3258 1.4227 44 1 2.8526 5.0820 2.9312 45 1 4.4778 4.3575 2.8806 46 1 3.4243 1.4094 4.7224 47 1 4.8146 2.1949 3.9355 48 1 2.3541 1.0604 2.5277 49 1 3.9846 0.3436 2.5342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163366900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:12 Heat of formation + Delta-G solvation = -136.971361 kcal Electronic energy + Delta-G solvation = -26794.810568 eV Core-core repulsion = 22949.672544 eV Total energy + Delta-G solvation = -3845.138023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68719 -39.15903 -37.91953 -35.99877 -34.66642 -34.22746 -32.01171 -31.56879 -31.33098 -29.82534 -28.07998 -25.29659 -24.11882 -23.78798 -23.06374 -22.45887 -21.27446 -20.62542 -20.13854 -17.66221 -17.23994 -16.94358 -16.72869 -16.20772 -15.87813 -15.63858 -15.48010 -15.11294 -14.83313 -14.62439 -14.28609 -14.12553 -14.04780 -13.33895 -13.27735 -13.04497 -12.80469 -12.67676 -12.52234 -12.29627 -12.15091 -11.69577 -11.68676 -11.58972 -11.37517 -11.08873 -10.97207 -10.93239 -10.80129 -10.64207 -10.63397 -10.34493 -10.12526 -9.93137 -9.74078 -9.37293 -9.10053 -8.89704 -6.96127 -5.79411 -3.08425 2.48185 2.76557 3.43282 3.47272 3.48468 3.54054 3.58327 4.17963 4.23918 4.42346 4.57193 4.59580 4.63081 4.71706 4.75985 4.91595 4.93661 5.02142 5.07653 5.10015 5.16506 5.24867 5.26980 5.31480 5.36609 5.38191 5.54401 5.55227 5.58680 5.59242 5.69463 5.79525 5.83521 5.94563 6.02477 6.08358 6.15312 6.28618 6.39087 6.74874 6.76663 6.79870 6.89341 7.40854 7.67697 8.13359 8.39637 9.50678 10.07436 10.42125 11.43558 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.002307 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.637209 B =12131.732127 C =13072.372928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.080 3.920 5 H 0.088 0.912 6 C 0.501 3.499 7 O -0.520 6.520 8 N -0.727 5.727 9 C 0.123 3.877 10 C -0.137 4.137 11 C 0.156 3.844 12 N -0.734 5.734 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.095 4.095 22 C -0.146 4.146 23 C 0.061 3.939 24 O -0.383 6.383 25 C 0.062 3.938 26 C -0.151 4.151 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.079 0.921 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.877 -9.986 15.900 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.266 6.266 4 C 0.018 3.982 5 H 0.106 0.894 6 C 0.286 3.714 7 O -0.395 6.395 8 N -0.380 5.380 9 C 0.000 4.000 10 C -0.175 4.175 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.584 5.584 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.114 4.114 22 C -0.183 4.183 23 C -0.016 4.016 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.233 0.767 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.693 -9.300 15.304 28.130 hybrid contribution 1.546 -0.235 -0.523 1.649 sum -20.147 -9.535 14.781 26.745 Atomic orbital electron populations 1.21717 0.93380 1.02219 1.03424 1.22664 0.96098 0.83632 0.99972 1.88043 1.18038 1.26200 1.94348 1.21957 0.84084 0.99146 0.92991 0.89392 1.20740 0.82545 0.81688 0.86457 1.90727 1.55251 1.47493 1.46030 1.46084 1.06606 1.54670 1.30666 1.21366 0.94508 0.95776 0.88373 1.21944 0.92673 1.01883 1.01029 1.20518 0.86302 0.96257 0.94104 1.42328 0.99344 1.63135 1.32990 1.19202 0.89092 1.24661 1.04238 0.91142 1.24756 0.96386 1.01060 0.98844 1.69648 1.06962 1.47232 1.34537 0.86236 0.78904 0.79579 0.81288 1.21201 1.21656 1.21216 1.21540 1.00541 0.96332 0.92956 1.22131 1.02605 0.95619 0.97986 1.22616 0.99883 0.92907 0.86180 1.87937 1.65797 1.27021 1.49421 1.22546 0.96323 0.85313 0.97319 1.22261 1.03275 0.98607 0.94704 0.91563 0.91086 0.91781 0.93304 0.93207 0.76697 0.91354 0.91304 0.91284 0.91311 0.96061 0.96043 0.78313 0.93442 0.89631 0.90780 0.89650 0.88704 0.93095 0.88833 0.93049 0.90217 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.42 6.21 37.16 0.23 0.65 16 3 O -0.35 -3.76 8.09 -55.09 -0.45 -4.21 16 4 C 0.08 0.75 2.34 -27.88 -0.07 0.68 16 5 H 0.09 0.61 7.61 -51.93 -0.40 0.22 16 6 C 0.50 6.28 6.27 -10.98 -0.07 6.21 16 7 O -0.52 -8.88 16.51 -14.31 -0.24 -9.11 16 8 N -0.73 -8.01 5.45 -60.29 -0.33 -8.34 16 9 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 10 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 11 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 12 N -0.73 -18.55 5.60 -59.91 -0.34 -18.88 16 13 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.94 -28.19 13.06 55.49 0.72 -27.47 16 17 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.09 -0.75 2.08 -90.44 -0.19 -0.94 16 22 C -0.15 -1.40 5.04 -26.59 -0.13 -1.53 16 23 C 0.06 0.53 6.84 37.21 0.25 0.79 16 24 O -0.38 -3.75 10.77 -35.23 -0.38 -4.13 16 25 C 0.06 0.44 6.84 37.21 0.25 0.69 16 26 C -0.15 -0.99 5.32 -26.59 -0.14 -1.13 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.30 7.81 -51.93 -0.41 -0.11 16 32 H 0.40 3.32 8.18 -40.82 -0.33 2.98 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.59 7.76 -51.93 -0.40 0.19 16 42 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 43 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.60 7.32 -51.93 -0.38 0.22 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -34.54 394.03 -8.90 -43.44 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.90 Total: 5.57 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.08 Total: -0.21 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.06 Total: -54.70 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.06 Total: -17.45 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.54 -8.90 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163366900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.533 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds