Wall clock time and date at job start Tue Mar 31 2020 10:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47169 * 2 1 4 4 C 1.42902 * 114.00067 * 176.61045 * 3 2 1 5 5 H 1.09000 * 109.47125 * 3.91941 * 4 3 2 6 6 C 1.50701 * 109.47141 * 123.91808 * 4 3 2 7 7 O 1.21286 * 119.99833 * 4.99822 * 6 4 3 8 8 N 1.34778 * 120.00417 * 185.00194 * 6 4 3 9 9 C 1.46497 * 120.00235 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46879 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46966 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00005 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00169 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99889 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47204 * 60.00012 * 17 15 13 19 19 H 1.48504 * 109.47244 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47012 * 300.00089 * 17 15 13 21 21 C 1.53002 * 109.47399 * 243.91734 * 4 3 2 22 22 C 1.53175 * 109.61478 * 305.74060 * 21 4 3 23 23 C 1.53095 * 109.16236 * 176.89096 * 22 21 4 24 24 O 1.42902 * 109.41436 * 302.39159 * 23 22 21 25 25 C 1.42905 * 114.10086 * 61.15681 * 24 23 22 26 26 C 1.53096 * 109.41253 * 298.84446 * 25 24 23 27 27 H 1.08998 * 109.47145 * 60.00197 * 1 2 3 28 28 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47397 * 300.00541 * 1 2 3 30 30 H 1.08996 * 109.47397 * 239.99459 * 2 1 3 31 31 H 1.08996 * 109.46632 * 119.99822 * 2 1 3 32 32 H 0.97008 * 119.99446 * 359.97438 * 8 6 4 33 33 H 1.09009 * 109.46681 * 299.99596 * 9 8 6 34 34 H 1.08998 * 109.47477 * 59.99651 * 9 8 6 35 35 H 1.08999 * 109.47099 * 299.99182 * 10 9 8 36 36 H 1.09002 * 109.47423 * 59.99958 * 10 9 8 37 37 H 1.08999 * 109.47198 * 300.00002 * 11 10 9 38 38 H 1.09002 * 109.46849 * 59.99895 * 11 10 9 39 39 H 0.97005 * 120.00053 * 0.02562 * 12 11 10 40 40 H 0.96996 * 119.99850 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.54175 * 185.51443 * 21 4 3 42 42 H 1.09000 * 109.52031 * 296.79125 * 22 21 4 43 43 H 1.09000 * 109.52570 * 56.98601 * 22 21 4 44 44 H 1.08995 * 109.48246 * 182.40892 * 23 22 21 45 45 H 1.08997 * 109.47903 * 62.36961 * 23 22 21 46 46 H 1.09000 * 109.48278 * 178.86484 * 25 24 23 47 47 H 1.08999 * 109.47645 * 58.82377 * 25 24 23 48 48 H 1.09004 * 109.51962 * 297.70057 * 26 25 24 49 49 H 1.08997 * 109.52119 * 177.51487 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4287 1.4608 0.0772 5 1 3.8746 0.4665 0.0513 6 6 3.9324 2.2677 -1.0917 7 8 3.1452 2.7789 -1.8598 8 7 5.2576 2.4212 -1.2837 9 6 5.7471 3.2060 -2.4197 10 6 7.2770 3.2222 -2.4068 11 6 7.7883 4.0413 -3.5936 12 7 9.2531 4.0573 -3.5810 13 6 9.9389 4.7341 -4.5542 14 1 9.3998 5.2564 -5.3307 15 6 11.3269 4.7497 -4.5419 16 7 11.9838 4.1136 -3.5952 17 14 12.2623 5.6735 -5.8689 18 1 11.8870 7.1097 -5.8304 19 1 13.7219 5.5362 -5.6324 20 1 11.9215 5.1084 -7.1993 21 6 3.8146 2.1590 1.3828 22 6 3.0759 3.4967 1.4883 23 6 3.4089 4.1500 2.8323 24 8 3.0471 3.2641 3.8936 25 6 3.7413 2.0152 3.8735 26 6 3.4217 1.2762 2.5714 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 5.8871 2.0126 -0.6691 33 1 5.3967 2.7573 -3.3493 34 1 5.3719 4.2266 -2.3449 35 1 7.6278 3.6707 -1.4774 36 1 7.6518 2.2014 -2.4820 37 1 7.4375 3.5926 -4.5230 38 1 7.4135 5.0621 -3.5189 39 1 9.7374 3.5885 -2.8834 40 1 12.9537 4.1242 -3.5869 41 1 4.8903 2.3341 1.3985 42 1 3.3917 4.1521 0.6766 43 1 2.0014 3.3258 1.4227 44 1 2.8526 5.0820 2.9312 45 1 4.4778 4.3575 2.8806 46 1 3.4243 1.4094 4.7224 47 1 4.8146 2.1949 3.9355 48 1 2.3541 1.0604 2.5277 49 1 3.9846 0.3436 2.5342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163366900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:11 Heat of formation + Delta-G solvation = -161.213133 kcal Electronic energy + Delta-G solvation = -26795.861770 eV Core-core repulsion = 22949.672544 eV Total energy + Delta-G solvation = -3846.189225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50952 -39.96649 -38.69302 -37.45690 -35.94656 -35.19473 -33.71848 -32.17649 -31.96621 -31.40543 -29.01961 -26.82293 -24.99291 -24.62538 -24.00065 -23.58200 -22.60554 -21.52767 -20.93599 -19.23258 -18.32921 -18.00015 -17.45796 -16.98602 -16.85217 -16.63524 -16.42566 -16.35875 -15.74697 -15.57595 -15.29010 -15.27238 -15.22949 -14.73308 -14.70123 -14.09632 -13.85244 -13.34589 -13.29638 -13.22288 -13.07167 -12.81231 -12.78416 -12.62155 -12.44959 -12.27896 -12.23359 -12.11170 -12.05545 -12.00148 -11.81858 -11.72472 -11.25050 -11.10736 -10.94525 -10.64585 -10.21242 -10.13271 -9.02771 -7.97351 -5.26439 1.47402 1.50236 1.52272 1.56400 1.89146 2.55299 2.82190 2.98922 3.36377 3.50154 3.56397 3.74281 3.75389 3.95889 4.00378 4.07483 4.11461 4.17961 4.27100 4.32699 4.33972 4.44161 4.45838 4.47910 4.59109 4.68400 4.71520 4.71869 4.72843 4.80597 4.83666 4.86386 4.91174 5.02422 5.12916 5.16467 5.25903 5.26719 5.30424 5.37972 5.39573 5.47885 6.09559 6.25525 6.28890 6.53594 7.19843 7.32065 8.06512 8.30684 9.25879 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.002307 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.637209 B =12131.732127 C =13072.372928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.375 6.375 4 C 0.085 3.915 5 H 0.120 0.880 6 C 0.499 3.501 7 O -0.573 6.573 8 N -0.713 5.713 9 C 0.134 3.866 10 C -0.117 4.117 11 C 0.152 3.848 12 N -0.746 5.746 13 C -0.251 4.251 14 H 0.074 0.926 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.278 1.278 21 C -0.092 4.092 22 C -0.142 4.142 23 C 0.063 3.937 24 O -0.404 6.404 25 C 0.054 3.946 26 C -0.143 4.143 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.416 0.584 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.376 0.624 40 H 0.253 0.747 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 -11.238 16.837 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.293 6.293 4 C 0.023 3.977 5 H 0.138 0.862 6 C 0.286 3.714 7 O -0.451 6.451 8 N -0.367 5.367 9 C 0.010 3.990 10 C -0.155 4.155 11 C 0.025 3.975 12 N -0.389 5.389 13 C -0.383 4.383 14 H 0.091 0.909 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.204 1.204 21 C -0.111 4.111 22 C -0.180 4.180 23 C -0.014 4.014 24 O -0.324 6.324 25 C -0.022 4.022 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.208 0.792 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.479 -10.569 16.259 28.937 hybrid contribution 1.389 0.147 -0.812 1.615 sum -20.090 -10.422 15.447 27.401 Atomic orbital electron populations 1.21739 0.93186 1.03347 1.02365 1.22873 0.96404 0.82619 1.01122 1.88036 1.18833 1.28086 1.94381 1.22033 0.83806 1.00074 0.91754 0.86216 1.21434 0.82255 0.81063 0.86681 1.90704 1.56546 1.49759 1.48106 1.45902 1.06740 1.53939 1.30122 1.21073 0.93292 0.95663 0.89015 1.21692 0.93318 1.01367 0.99107 1.20675 0.83536 0.97076 0.96250 1.42521 1.01453 1.62729 1.32220 1.19599 0.89710 1.24303 1.04677 0.90852 1.25577 0.97364 1.02481 1.01216 1.69791 1.06856 1.48841 1.36321 0.85207 0.77164 0.78530 0.78832 1.20420 1.21885 1.20415 1.21580 1.01138 0.95429 0.92919 1.22035 1.01497 0.96596 0.97825 1.22600 1.00381 0.92860 0.85550 1.87911 1.66633 1.28232 1.49575 1.22775 0.96818 0.84453 0.98137 1.22226 1.03106 0.99283 0.93482 0.93403 0.88850 0.92038 0.93325 0.90677 0.74701 0.92204 0.92239 0.90513 0.90518 0.96158 0.96177 0.79151 0.93846 0.88007 0.92726 0.91762 0.88753 0.92166 0.87394 0.91980 0.91193 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.65 6.21 71.98 0.45 1.09 16 3 O -0.38 -7.82 8.09 -129.99 -1.05 -8.87 16 4 C 0.08 1.43 2.34 29.85 0.07 1.50 16 5 H 0.12 1.24 7.61 -2.39 -0.02 1.22 16 6 C 0.50 12.11 6.27 87.66 0.55 12.66 16 7 O -0.57 -19.90 16.51 15.94 0.26 -19.63 16 8 N -0.71 -14.58 5.45 -463.05 -2.52 -17.10 16 9 C 0.13 3.45 5.67 86.38 0.49 3.94 16 10 C -0.12 -3.30 5.44 30.59 0.17 -3.13 16 11 C 0.15 5.90 6.26 86.38 0.54 6.44 16 12 N -0.75 -37.54 5.60 -343.45 -1.92 -39.46 16 13 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 14 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 16 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 17 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 C -0.09 -1.27 2.08 -10.68 -0.02 -1.30 16 22 C -0.14 -2.69 5.04 30.68 0.15 -2.53 16 23 C 0.06 1.06 6.84 72.01 0.49 1.55 16 24 O -0.40 -7.41 10.77 -148.98 -1.60 -9.01 16 25 C 0.05 0.63 6.84 72.01 0.49 1.12 16 26 C -0.14 -1.47 5.32 30.69 0.16 -1.31 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.67 7.81 -2.39 -0.02 0.65 16 32 H 0.42 5.74 8.18 -92.70 -0.76 4.98 16 33 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.38 19.69 7.67 -92.70 -0.71 18.98 16 40 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.10 1.09 7.76 -2.39 -0.02 1.07 16 42 H 0.05 1.23 7.52 -2.39 -0.02 1.21 16 43 H 0.06 1.48 7.46 -2.39 -0.02 1.46 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.89 7.32 -2.39 -0.02 0.87 16 49 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -75.28 394.03 0.52 -74.76 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.54 Total: 27.78 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.59 Total: 1.79 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.17 Total: -114.75 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -2.39 Total: -37.52 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.28 0.52 -74.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163366900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.450 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds