Wall clock time and date at job start Tue Mar 31 2020 11:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46954 * 2 1 4 4 C 1.53000 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46788 * 304.99507 * 5 4 3 7 7 F 1.39897 * 109.47044 * 64.99336 * 5 4 3 8 8 C 1.50696 * 109.46976 * 184.99635 * 5 4 3 9 9 O 1.21286 * 119.99875 * 10.00115 * 8 5 4 10 10 N 1.34772 * 119.99971 * 189.72138 * 8 5 4 11 11 C 1.46500 * 120.00103 * 180.27682 * 10 8 5 12 12 C 1.53005 * 109.46880 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46919 * 175.45812 * 12 11 10 14 14 C 1.52996 * 115.54904 * 279.32664 * 13 12 11 15 15 N 1.46502 * 109.47128 * 294.94841 * 14 13 12 16 16 C 1.36939 * 120.00335 * 174.37208 * 15 14 13 17 17 H 1.07999 * 119.99652 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46683 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47493 * 119.99789 * 20 18 16 23 23 H 1.48505 * 109.47124 * 240.00111 * 20 18 16 24 24 C 1.53003 * 117.49961 * 133.61691 * 13 12 11 25 25 C 1.53000 * 117.50002 * 64.99086 * 13 12 11 26 26 H 1.09003 * 109.46626 * 60.00301 * 1 2 3 27 27 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47478 * 300.00473 * 1 2 3 29 29 H 1.09003 * 109.47780 * 240.00046 * 2 1 3 30 30 H 1.09004 * 109.47128 * 119.99550 * 2 1 3 31 31 H 1.09001 * 109.47227 * 59.99831 * 3 2 1 32 32 H 1.09004 * 109.46835 * 299.99730 * 3 2 1 33 33 H 1.09001 * 109.47291 * 59.99871 * 4 3 2 34 34 H 1.09004 * 109.47128 * 299.99550 * 4 3 2 35 35 H 1.08994 * 109.47375 * 300.00086 * 6 5 4 36 36 H 1.09001 * 109.47174 * 60.00453 * 6 5 4 37 37 H 1.08997 * 109.46910 * 179.97438 * 6 5 4 38 38 H 0.97001 * 120.00025 * 0.27925 * 10 8 5 39 39 H 1.08994 * 109.47468 * 299.99778 * 11 10 8 40 40 H 1.08999 * 109.47215 * 60.00623 * 11 10 8 41 41 H 1.09004 * 109.47016 * 295.45540 * 12 11 10 42 42 H 1.08994 * 109.47217 * 55.46058 * 12 11 10 43 43 H 1.08996 * 109.47342 * 54.94811 * 14 13 12 44 44 H 1.09004 * 109.47452 * 174.95466 * 14 13 12 45 45 H 0.96999 * 119.99824 * 354.37619 * 15 14 13 46 46 H 0.96997 * 119.99725 * 180.02562 * 19 18 16 47 47 H 1.08993 * 117.49707 * 359.97438 * 24 13 12 48 48 H 1.08997 * 117.49680 * 145.02347 * 24 13 12 49 49 H 1.09002 * 117.50237 * 214.97599 * 25 13 12 50 50 H 1.09006 * 117.49836 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8852 0.0000 6 6 3.4704 3.6409 -1.1824 7 9 3.7092 3.5114 1.1948 8 6 5.5819 2.8869 -0.1231 9 8 6.1701 1.8588 -0.3838 10 7 6.2709 4.0320 0.0509 11 6 7.7305 4.0349 -0.0748 12 6 8.2605 5.4495 0.1686 13 6 9.7903 5.4312 0.1496 14 6 10.4608 4.9670 1.4441 15 7 10.1705 5.9239 2.5148 16 6 10.5706 5.6587 3.7973 17 1 11.1005 4.7442 4.0193 18 6 10.2950 6.5650 4.8117 19 7 9.6487 7.6793 4.5412 20 14 10.8414 6.2035 6.5611 21 1 11.5430 4.8953 6.6001 22 1 11.7617 7.2733 7.0234 23 1 9.6532 6.1542 7.4506 24 6 10.4997 6.5150 -0.6648 25 6 10.4761 5.0709 -1.1698 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8935 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8901 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 3.7592 3.1531 -2.1133 36 1 2.3841 3.6397 -1.0933 37 1 3.8334 4.6687 -1.1826 38 1 5.8005 4.8542 0.2594 39 1 8.1600 3.3549 0.6609 40 1 8.0096 3.7095 -1.0769 41 1 7.8953 6.1140 -0.6144 42 1 7.9135 5.8056 1.1386 43 1 10.0767 3.9851 1.7204 44 1 11.5387 4.9064 1.2935 45 1 9.6948 6.7454 2.3152 46 1 9.4565 8.3128 5.2501 47 1 9.8765 7.2407 -1.1872 48 1 11.4443 6.8976 -0.2782 49 1 11.4053 4.5036 -1.1155 50 1 9.8375 4.8472 -2.0243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165828708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:32 Heat of formation + Delta-G solvation = -81.454978 kcal Electronic energy + Delta-G solvation = -26552.436353 eV Core-core repulsion = 22722.078490 eV Total energy + Delta-G solvation = -3830.357863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.07124 -39.83310 -38.30719 -36.46991 -34.92415 -33.91032 -33.21767 -30.77606 -30.19745 -28.82290 -26.12583 -25.74225 -23.90240 -22.77916 -22.42602 -21.69385 -21.11535 -20.12156 -18.65554 -17.68413 -17.04880 -16.51837 -16.31141 -15.71301 -15.39685 -15.21879 -14.86300 -14.68085 -14.36283 -14.11936 -13.93087 -13.57976 -13.35172 -13.13012 -13.04730 -12.81107 -12.67761 -12.53779 -12.49172 -12.24623 -11.93445 -11.62101 -11.49854 -11.47157 -11.32781 -11.14577 -10.97335 -10.92248 -10.84157 -10.79312 -10.60409 -10.11879 -9.90213 -9.82036 -9.63592 -9.32961 -9.09857 -8.84466 -6.89022 -5.75022 -3.02871 2.35859 2.91321 3.44667 3.50595 3.52581 4.03778 4.07809 4.17296 4.28696 4.48721 4.62727 4.69408 4.77012 4.85191 4.99927 5.05538 5.08296 5.13917 5.19082 5.29316 5.32939 5.40468 5.44665 5.50240 5.51629 5.58922 5.64991 5.66005 5.69893 5.72855 5.75336 5.87354 5.89777 5.99790 6.06071 6.12889 6.17477 6.22363 6.36989 6.42384 6.45608 6.55052 6.75893 6.84354 7.34862 7.72551 8.00125 8.44183 9.55895 10.13943 10.49681 11.47912 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002776 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.279394 B =10083.766002 C =11541.160495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.126 4.126 5 C 0.106 3.894 6 C -0.174 4.174 7 F -0.192 7.192 8 C 0.498 3.502 9 O -0.527 6.527 10 N -0.715 5.715 11 C 0.123 3.877 12 C -0.091 4.091 13 C -0.119 4.119 14 C 0.187 3.813 15 N -0.728 5.728 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.164 4.164 25 C -0.178 4.178 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.026 0.974 44 H 0.017 0.983 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.476 -9.305 -15.782 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.164 4.164 5 C 0.084 3.916 6 C -0.232 4.232 7 F -0.173 7.173 8 C 0.281 3.719 9 O -0.403 6.403 10 N -0.365 5.365 11 C 0.000 4.000 12 C -0.129 4.129 13 C -0.120 4.120 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.239 0.761 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.955 -10.119 -15.789 23.986 hybrid contribution -0.014 0.690 1.209 1.392 sum -14.969 -9.429 -14.579 22.925 Atomic orbital electron populations 1.21773 0.95801 1.01598 1.01830 1.21511 0.95850 0.96515 1.02311 1.21723 0.94096 0.97505 1.02779 1.21987 0.96231 0.92896 1.05265 1.21205 0.91770 0.95365 0.83247 1.22445 1.02876 1.00979 0.96876 1.92929 1.92470 1.84006 1.47896 1.20754 0.89333 0.84048 0.77721 1.90726 1.70242 1.31780 1.47557 1.46041 1.08687 1.11132 1.70670 1.21439 0.77944 0.98609 1.01981 1.21260 0.93378 0.94863 1.03413 1.21563 0.93102 1.04119 0.93240 1.20184 0.95437 0.93127 0.85272 1.42300 1.69215 1.22005 1.03642 1.19277 1.29596 1.03120 0.84785 0.91221 1.24719 1.01351 0.96934 0.98028 1.69670 1.46016 1.10688 1.31839 0.86134 0.77771 0.77310 0.85107 1.20587 1.21911 1.21886 1.22966 1.02731 0.91367 1.03048 1.22978 1.02545 0.98991 0.97009 0.92794 0.92782 0.92668 0.91885 0.91827 0.91269 0.91335 0.89086 0.90108 0.90026 0.89690 0.90829 0.76148 0.90739 0.91508 0.91900 0.89325 0.95584 0.96527 0.78157 0.93634 0.89314 0.88563 0.88916 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.95 4.64 -26.73 -0.12 -1.08 16 4 C -0.13 -1.23 4.02 -26.73 -0.11 -1.34 16 5 C 0.11 1.13 1.20 -91.77 -0.11 1.02 16 6 C -0.17 -1.32 8.42 37.16 0.31 -1.01 16 7 F -0.19 -2.38 16.42 2.25 0.04 -2.34 16 8 C 0.50 6.76 6.79 -10.99 -0.07 6.69 16 9 O -0.53 -8.76 15.87 5.55 0.09 -8.67 16 10 N -0.71 -9.18 5.53 -60.30 -0.33 -9.52 16 11 C 0.12 1.73 5.51 -4.04 -0.02 1.71 16 12 C -0.09 -1.32 5.24 -26.73 -0.14 -1.46 16 13 C -0.12 -1.90 1.52 -154.51 -0.23 -2.13 16 14 C 0.19 3.81 6.10 -4.04 -0.02 3.78 16 15 N -0.73 -18.31 5.30 -59.91 -0.32 -18.63 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 C -0.16 -2.39 9.90 -26.73 -0.26 -2.65 16 25 C -0.18 -2.35 9.57 -26.73 -0.26 -2.60 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 32 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 33 H 0.09 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.53 6.34 -51.93 -0.33 0.20 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.40 4.48 8.45 -40.82 -0.34 4.14 16 39 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 40 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 41 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 42 H 0.09 1.52 7.64 -51.93 -0.40 1.13 16 43 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 44 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 45 H 0.38 10.12 7.46 -40.82 -0.30 9.82 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 48 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.09 1.03 7.98 -51.93 -0.41 0.61 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -32.17 406.11 -8.95 -41.12 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -9.17 Total: 9.76 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.08 Total: -8.03 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.07 Total: -55.63 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.17 -8.95 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165828708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.330 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds