Wall clock time and date at job start Tue Mar 31 2020 11:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46954 * 2 1 4 4 C 1.53000 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46788 * 304.99507 * 5 4 3 7 7 F 1.39897 * 109.47044 * 64.99336 * 5 4 3 8 8 C 1.50696 * 109.46976 * 184.99635 * 5 4 3 9 9 O 1.21286 * 119.99875 * 10.00115 * 8 5 4 10 10 N 1.34772 * 119.99971 * 189.72138 * 8 5 4 11 11 C 1.46500 * 120.00103 * 180.27682 * 10 8 5 12 12 C 1.53005 * 109.46880 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46919 * 175.45812 * 12 11 10 14 14 C 1.52996 * 115.54904 * 279.32664 * 13 12 11 15 15 N 1.46502 * 109.47128 * 294.94841 * 14 13 12 16 16 C 1.36939 * 120.00335 * 174.37208 * 15 14 13 17 17 H 1.07999 * 119.99652 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46683 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47493 * 119.99789 * 20 18 16 23 23 H 1.48505 * 109.47124 * 240.00111 * 20 18 16 24 24 C 1.53003 * 117.49961 * 133.61691 * 13 12 11 25 25 C 1.53000 * 117.50002 * 64.99086 * 13 12 11 26 26 H 1.09003 * 109.46626 * 60.00301 * 1 2 3 27 27 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47478 * 300.00473 * 1 2 3 29 29 H 1.09003 * 109.47780 * 240.00046 * 2 1 3 30 30 H 1.09004 * 109.47128 * 119.99550 * 2 1 3 31 31 H 1.09001 * 109.47227 * 59.99831 * 3 2 1 32 32 H 1.09004 * 109.46835 * 299.99730 * 3 2 1 33 33 H 1.09001 * 109.47291 * 59.99871 * 4 3 2 34 34 H 1.09004 * 109.47128 * 299.99550 * 4 3 2 35 35 H 1.08994 * 109.47375 * 300.00086 * 6 5 4 36 36 H 1.09001 * 109.47174 * 60.00453 * 6 5 4 37 37 H 1.08997 * 109.46910 * 179.97438 * 6 5 4 38 38 H 0.97001 * 120.00025 * 0.27925 * 10 8 5 39 39 H 1.08994 * 109.47468 * 299.99778 * 11 10 8 40 40 H 1.08999 * 109.47215 * 60.00623 * 11 10 8 41 41 H 1.09004 * 109.47016 * 295.45540 * 12 11 10 42 42 H 1.08994 * 109.47217 * 55.46058 * 12 11 10 43 43 H 1.08996 * 109.47342 * 54.94811 * 14 13 12 44 44 H 1.09004 * 109.47452 * 174.95466 * 14 13 12 45 45 H 0.96999 * 119.99824 * 354.37619 * 15 14 13 46 46 H 0.96997 * 119.99725 * 180.02562 * 19 18 16 47 47 H 1.08993 * 117.49707 * 359.97438 * 24 13 12 48 48 H 1.08997 * 117.49680 * 145.02347 * 24 13 12 49 49 H 1.09002 * 117.50237 * 214.97599 * 25 13 12 50 50 H 1.09006 * 117.49836 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8852 0.0000 6 6 3.4704 3.6409 -1.1824 7 9 3.7092 3.5114 1.1948 8 6 5.5819 2.8869 -0.1231 9 8 6.1701 1.8588 -0.3838 10 7 6.2709 4.0320 0.0509 11 6 7.7305 4.0349 -0.0748 12 6 8.2605 5.4495 0.1686 13 6 9.7903 5.4312 0.1496 14 6 10.4608 4.9670 1.4441 15 7 10.1705 5.9239 2.5148 16 6 10.5706 5.6587 3.7973 17 1 11.1005 4.7442 4.0193 18 6 10.2950 6.5650 4.8117 19 7 9.6487 7.6793 4.5412 20 14 10.8414 6.2035 6.5611 21 1 11.5430 4.8953 6.6001 22 1 11.7617 7.2733 7.0234 23 1 9.6532 6.1542 7.4506 24 6 10.4997 6.5150 -0.6648 25 6 10.4761 5.0709 -1.1698 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8935 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8901 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 3.7592 3.1531 -2.1133 36 1 2.3841 3.6397 -1.0933 37 1 3.8334 4.6687 -1.1826 38 1 5.8005 4.8542 0.2594 39 1 8.1600 3.3549 0.6609 40 1 8.0096 3.7095 -1.0769 41 1 7.8953 6.1140 -0.6144 42 1 7.9135 5.8056 1.1386 43 1 10.0767 3.9851 1.7204 44 1 11.5387 4.9064 1.2935 45 1 9.6948 6.7454 2.3152 46 1 9.4565 8.3128 5.2501 47 1 9.8765 7.2407 -1.1872 48 1 11.4443 6.8976 -0.2782 49 1 11.4053 4.5036 -1.1155 50 1 9.8375 4.8472 -2.0243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165828708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:31 Heat of formation + Delta-G solvation = -100.506799 kcal Electronic energy + Delta-G solvation = -26553.262502 eV Core-core repulsion = 22722.078490 eV Total energy + Delta-G solvation = -3831.184012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.00381 -40.93646 -39.57704 -37.18217 -36.17687 -35.76866 -33.92151 -32.79450 -31.29343 -29.51936 -27.85104 -26.62986 -24.95507 -24.62525 -23.43249 -22.77273 -21.87500 -21.08454 -20.00183 -19.11294 -18.64975 -17.53634 -17.23712 -16.78038 -16.52292 -16.35043 -16.16947 -15.92653 -15.62019 -15.44200 -15.04575 -14.75621 -14.59854 -14.28500 -14.10832 -13.84665 -13.78107 -13.65342 -13.22990 -13.16508 -13.11435 -13.03906 -12.83318 -12.59783 -12.28395 -12.25442 -12.15736 -12.13379 -11.98470 -11.95413 -11.84639 -11.61166 -11.40235 -11.11614 -10.95123 -10.85000 -10.56118 -10.22888 -8.98953 -7.96518 -5.24044 1.28741 1.44871 1.45487 1.55396 1.90089 2.52604 2.88197 3.21512 3.36483 3.42361 3.43705 3.70485 3.81010 3.84122 3.95902 4.05161 4.10321 4.11988 4.22540 4.28948 4.38158 4.46801 4.47789 4.59857 4.61273 4.73231 4.79893 4.82511 4.83606 4.90477 4.92164 4.95039 5.03697 5.07623 5.10673 5.13604 5.15426 5.24252 5.30301 5.32681 5.33999 5.36995 5.39634 5.47493 5.48467 6.26268 6.30708 6.95093 7.33297 8.09378 8.35135 9.26901 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.002776 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.279394 B =10083.766002 C =11541.160495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.124 4.124 5 C 0.106 3.894 6 C -0.170 4.170 7 F -0.203 7.203 8 C 0.493 3.507 9 O -0.562 6.562 10 N -0.710 5.710 11 C 0.132 3.868 12 C -0.078 4.078 13 C -0.141 4.141 14 C 0.187 3.813 15 N -0.736 5.736 16 C -0.245 4.245 17 H 0.069 0.931 18 C -0.073 4.073 19 N -0.965 5.965 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.293 1.293 24 C -0.163 4.163 25 C -0.149 4.149 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.109 0.891 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 -9.383 -17.553 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.162 4.162 5 C 0.085 3.915 6 C -0.227 4.227 7 F -0.184 7.184 8 C 0.277 3.723 9 O -0.441 6.441 10 N -0.361 5.361 11 C 0.008 3.992 12 C -0.115 4.115 13 C -0.142 4.142 14 C 0.060 3.940 15 N -0.378 5.378 16 C -0.377 4.377 17 H 0.087 0.913 18 C -0.265 4.265 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.218 1.218 23 H -0.220 1.220 24 C -0.200 4.200 25 C -0.186 4.186 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.128 0.872 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.906 -10.206 -17.575 25.808 hybrid contribution 0.341 0.662 1.739 1.892 sum -15.565 -9.544 -15.836 24.168 Atomic orbital electron populations 1.21763 0.94897 1.02044 1.02162 1.21520 0.96624 0.96056 1.02109 1.21697 0.92277 0.98086 1.03362 1.21982 0.97777 0.92169 1.04265 1.21346 0.89771 0.96386 0.84027 1.22484 1.03800 1.00942 0.95512 1.92909 1.92353 1.84252 1.48897 1.21348 0.90673 0.83470 0.76780 1.90703 1.71259 1.32903 1.49224 1.46022 1.08280 1.11588 1.70166 1.21269 0.78573 0.97698 1.01637 1.21107 0.92418 0.95371 1.02633 1.21397 0.93807 1.06614 0.92394 1.20246 0.95524 0.91787 0.86405 1.42442 1.68913 1.22523 1.03937 1.19625 1.28843 1.02878 0.86311 0.91266 1.25498 1.02138 0.97055 1.01827 1.69808 1.47472 1.11571 1.32744 0.85131 0.77173 0.77442 0.80370 1.19462 1.21770 1.21989 1.23015 1.02012 0.92412 1.02595 1.23071 1.02363 0.97594 0.95560 0.91903 0.92338 0.92880 0.91432 0.92786 0.91923 0.89396 0.89005 0.92252 0.88950 0.87855 0.90028 0.75064 0.93938 0.90112 0.88907 0.92559 0.96639 0.96856 0.79085 0.93976 0.87248 0.90197 0.88580 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.65 5.93 30.60 0.18 -1.46 16 3 C -0.12 -1.64 4.64 30.60 0.14 -1.50 16 4 C -0.12 -2.37 4.02 30.60 0.12 -2.25 16 5 C 0.11 2.17 1.20 -11.54 -0.01 2.16 16 6 C -0.17 -2.17 8.42 71.98 0.61 -1.56 16 7 F -0.20 -4.93 16.42 44.97 0.74 -4.19 16 8 C 0.49 13.22 6.79 87.66 0.60 13.81 16 9 O -0.56 -18.83 15.87 -3.05 -0.05 -18.88 16 10 N -0.71 -17.83 5.53 -463.06 -2.56 -20.39 16 11 C 0.13 3.63 5.51 86.38 0.48 4.11 16 12 C -0.08 -2.18 5.24 30.60 0.16 -2.02 16 13 C -0.14 -4.37 1.52 -52.18 -0.08 -4.45 16 14 C 0.19 7.72 6.10 86.38 0.53 8.25 16 15 N -0.74 -37.88 5.30 -343.46 -1.82 -39.70 16 16 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 19 N -0.97 -59.32 13.06 21.65 0.28 -59.03 16 20 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 C -0.16 -4.45 9.90 30.60 0.30 -4.15 16 25 C -0.15 -3.53 9.57 30.60 0.29 -3.23 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.98 7.94 -2.39 -0.02 0.96 16 32 H 0.09 0.90 6.34 -2.38 -0.02 0.89 16 33 H 0.09 1.74 7.81 -2.39 -0.02 1.72 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.96 6.34 -2.39 -0.02 0.94 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.41 8.80 8.45 -92.71 -0.78 8.02 16 39 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 40 H 0.08 2.02 7.80 -2.39 -0.02 2.00 16 41 H 0.09 2.05 7.94 -2.39 -0.02 2.04 16 42 H 0.06 1.96 7.64 -2.39 -0.02 1.94 16 43 H 0.02 0.68 7.69 -2.39 -0.02 0.66 16 44 H 0.01 0.57 8.09 -2.38 -0.02 0.55 16 45 H 0.38 20.36 7.46 -92.71 -0.69 19.67 16 46 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.11 2.54 8.08 -2.39 -0.02 2.52 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.12 2.19 7.98 -2.38 -0.02 2.17 16 Total: -1.00 -70.49 406.11 3.39 -67.09 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.56 Total: 36.11 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.33 Total: -10.19 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -4.10 Total: -119.12 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.74 Total: -4.19 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -70.49 3.39 -67.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165828708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.415 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds