Wall clock time and date at job start Tue Mar 31 2020 11:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38682 * 119.27311 * 2 1 4 4 C 1.38009 * 119.62640 * 180.02562 * 3 2 1 5 5 C 1.41005 * 118.28287 * 359.75145 * 4 3 2 6 6 C 1.41018 * 120.71043 * 180.24639 * 5 4 3 7 7 H 1.07999 * 120.00098 * 197.90360 * 6 5 4 8 8 C 1.39948 * 120.00037 * 17.89758 * 6 5 4 9 9 N 1.30868 * 119.99833 * 22.67062 * 8 6 5 10 10 Si 1.86797 * 120.00159 * 202.67426 * 8 6 5 11 11 H 1.48499 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47396 * 120.00234 * 10 8 6 13 13 H 1.48506 * 109.47028 * 240.00138 * 10 8 6 14 14 C 1.41714 * 118.58413 * 0.48984 * 5 4 3 15 15 N 1.38096 * 119.90446 * 179.77858 * 14 5 4 16 16 C 1.48809 * 111.18599 * 99.77158 * 15 14 5 17 17 C 1.54939 * 103.34578 * 159.50611 * 16 15 14 18 18 C 1.54595 * 102.92154 * 322.69356 * 17 16 15 19 19 H 1.09005 * 110.38967 * 262.99768 * 18 17 16 20 20 C 1.52998 * 110.30782 * 140.87576 * 18 17 16 21 21 C 1.53001 * 109.47016 * 184.28356 * 20 18 17 22 22 C 1.53004 * 109.47298 * 180.02562 * 21 20 18 23 23 C 1.52994 * 109.47171 * 59.99555 * 22 21 20 24 24 C 1.53001 * 109.47372 * 300.00399 * 23 22 21 25 25 C 1.52995 * 109.47458 * 64.28362 * 20 18 17 26 26 C 1.47898 * 110.99786 * 217.11523 * 15 14 5 27 27 N 1.31971 * 119.28221 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47327 * 269.97393 * 1 2 3 29 29 H 1.08999 * 109.47392 * 29.97878 * 1 2 3 30 30 H 1.09007 * 109.46763 * 149.98035 * 1 2 3 31 31 H 1.07997 * 120.18763 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.86152 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00450 * 179.97438 * 9 8 6 34 34 H 1.09000 * 110.51900 * 41.07643 * 16 15 14 35 35 H 1.09001 * 110.69968 * 278.02150 * 16 15 14 36 36 H 1.09000 * 110.72357 * 204.33792 * 17 16 15 37 37 H 1.09005 * 110.72569 * 81.05060 * 17 16 15 38 38 H 1.09003 * 109.47275 * 304.28237 * 20 18 17 39 39 H 1.09010 * 109.47161 * 299.99396 * 21 20 18 40 40 H 1.08995 * 109.47276 * 59.99780 * 21 20 18 41 41 H 1.09003 * 109.47048 * 299.99916 * 22 21 20 42 42 H 1.08998 * 109.47243 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47077 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.47328 * 60.00189 * 23 22 21 45 45 H 1.09003 * 109.47002 * 299.99735 * 24 23 22 46 46 H 1.09005 * 109.47303 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47251 * 299.99827 * 25 20 18 48 48 H 1.09006 * 109.47467 * 59.99651 * 25 20 18 49 49 H 1.08998 * 109.92045 * 94.80507 * 26 15 14 50 50 H 1.09000 * 109.91587 * 333.69859 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2182 -0.0005 5 6 4.2409 -0.0193 0.0043 6 6 5.6502 -0.0704 0.0092 7 1 6.1586 -0.9799 -0.2747 8 6 6.3899 1.0577 0.3819 9 7 5.8419 1.9821 1.1287 10 14 8.1595 1.2438 -0.1867 11 1 8.5398 0.0703 -1.0134 12 1 8.2922 2.4828 -0.9943 13 1 9.0535 1.3259 0.9963 14 6 3.4737 -1.2108 -0.0011 15 7 4.1074 -2.4378 -0.0012 16 6 4.1397 -3.0265 1.3651 17 6 4.3688 -4.5356 1.0990 18 6 3.5322 -4.7928 -0.1753 19 1 2.5554 -5.1993 0.0873 20 6 4.2711 -5.7514 -1.1112 21 6 3.4779 -5.9089 -2.4100 22 6 4.2165 -6.8681 -3.3456 23 6 4.3608 -8.2319 -2.6676 24 6 5.1540 -8.0745 -1.3688 25 6 4.4159 -7.1155 -0.4335 26 6 3.3756 -3.4122 -0.8393 27 7 2.1524 -1.1511 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6363 2.1399 0.0004 32 1 4.1134 2.1487 -0.0010 33 1 6.3546 2.7638 1.3873 34 1 3.1888 -2.8655 1.8730 35 1 4.9626 -2.6089 1.9452 36 1 3.9985 -5.1345 1.9310 37 1 5.4238 -4.7390 0.9153 38 1 5.2596 -5.3505 -1.3355 39 1 2.4894 -6.3100 -2.1857 40 1 3.3747 -4.9372 -2.8928 41 1 5.2051 -6.4675 -3.5700 42 1 3.6511 -6.9806 -4.2707 43 1 4.8874 -8.9151 -3.3340 44 1 3.3722 -8.6326 -2.4432 45 1 6.1426 -7.6739 -1.5932 46 1 5.2564 -9.0461 -0.8855 47 1 4.9811 -7.0033 0.4918 48 1 3.4274 -7.5165 -0.2091 49 1 3.8010 -3.4324 -1.8426 50 1 2.3210 -3.1413 -0.8885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167067887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:14 Heat of formation + Delta-G solvation = 3.224564 kcal Electronic energy + Delta-G solvation = -26981.390698 eV Core-core repulsion = 23585.474041 eV Total energy + Delta-G solvation = -3395.916657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.68509 -38.51490 -36.78446 -34.26162 -32.95462 -30.92968 -30.85839 -30.35016 -28.49767 -27.80862 -27.11685 -24.12743 -22.88597 -22.41166 -21.49059 -20.63667 -19.90748 -19.73870 -19.27825 -17.30655 -16.02062 -15.92237 -15.49228 -14.70400 -14.26056 -14.10603 -14.04978 -13.92100 -13.72891 -13.20396 -12.91387 -12.77153 -12.60962 -12.35983 -12.25894 -12.17635 -11.91963 -11.66755 -11.49878 -11.25829 -11.17884 -11.06499 -11.01842 -10.92107 -10.87745 -10.76359 -10.64089 -10.46519 -10.44299 -10.03234 -9.83221 -9.75173 -9.67940 -9.26621 -8.41001 -8.06325 -7.67029 -7.23887 -6.82019 -4.34539 2.59562 2.90622 3.03857 3.10495 3.20466 3.86538 4.52266 4.68786 4.74336 4.79862 4.90289 5.13535 5.19151 5.26182 5.40526 5.50925 5.54669 5.57655 5.59852 5.69194 5.75807 5.80274 5.82636 5.98684 5.99461 6.02912 6.09069 6.12531 6.17815 6.19310 6.24865 6.31743 6.33909 6.37875 6.41753 6.44542 6.51648 6.59692 6.61198 6.64007 6.75062 6.81496 6.91967 6.99807 7.17147 7.19530 7.62041 7.71552 7.81262 8.05634 8.35979 8.61158 8.72081 8.98649 9.66003 10.00601 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.004193 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.644992 B = 6675.720503 C = 8153.556380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.016 4.016 3 C -0.145 4.145 4 C -0.147 4.147 5 C 0.087 3.913 6 C -0.415 4.415 7 H 0.096 0.904 8 C 0.072 3.928 9 N -0.781 5.781 10 Si 0.909 3.091 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.274 1.274 14 C 0.148 3.852 15 N -0.433 5.433 16 C 0.047 3.953 17 C -0.115 4.115 18 C -0.090 4.090 19 H 0.066 0.934 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.113 4.113 26 C 0.042 3.958 27 N -0.485 5.485 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.282 0.718 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -12.476 -3.299 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.173 4.173 5 C 0.081 3.919 6 C -0.444 4.444 7 H 0.114 0.886 8 C -0.148 4.148 9 N -0.405 5.405 10 Si 0.732 3.268 11 H -0.179 1.179 12 H -0.197 1.197 13 H -0.199 1.199 14 C -0.086 4.086 15 N -0.154 5.154 16 C -0.080 4.080 17 C -0.154 4.154 18 C -0.109 4.109 19 H 0.084 0.916 20 C -0.093 4.093 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.086 4.086 27 N -0.197 5.197 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.906 -12.914 -3.367 13.376 hybrid contribution 0.397 1.031 0.187 1.121 sum -0.508 -11.883 -3.179 12.311 Atomic orbital electron populations 1.20242 0.91995 1.00485 1.00108 1.19945 0.94335 0.88340 1.12998 1.21385 0.95354 0.96808 1.03034 1.21696 0.92429 0.98814 1.04334 1.18037 0.94033 0.89920 0.89949 1.19673 0.91008 0.98069 1.35608 0.88565 1.26133 1.01329 0.94935 0.92403 1.69868 1.38847 1.08449 1.23334 0.86241 0.81288 0.79612 0.79617 1.17926 1.19664 1.19927 1.19433 0.86495 0.90452 1.12178 1.62234 1.46147 0.99868 1.07177 1.23179 1.00355 0.92796 0.91626 1.22543 1.00188 0.96032 0.96589 1.22012 0.98308 0.95392 0.95171 0.91559 1.21186 0.99449 0.94327 0.94297 1.21640 0.98658 0.99445 0.95634 1.21534 1.00745 0.95343 0.98051 1.21530 1.00156 0.97153 0.96741 1.21526 0.99208 0.99053 0.95886 1.21578 1.00254 0.95019 0.98203 1.22902 0.98853 0.89764 0.97090 1.66613 1.10887 1.30098 1.12122 0.93565 0.93149 0.93001 0.88656 0.85234 0.90661 0.94260 0.90497 0.92086 0.91045 0.90813 0.92366 0.91481 0.92049 0.92451 0.92600 0.92307 0.92082 0.92539 0.91937 0.92407 0.91523 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.00 0.37 -0.95 16 2 C -0.02 -0.38 6.79 -82.37 -0.56 -0.94 16 3 C -0.15 -3.45 9.69 -39.50 -0.38 -3.83 16 4 C -0.15 -3.79 8.86 -38.62 -0.34 -4.13 16 5 C 0.09 2.29 5.66 -106.47 -0.60 1.69 16 6 C -0.42 -10.71 8.76 -37.89 -0.33 -11.04 16 7 H 0.10 2.47 7.52 -52.49 -0.39 2.08 16 8 C 0.07 1.73 5.12 -17.32 -0.09 1.64 16 9 N -0.78 -19.34 10.87 55.55 0.60 -18.73 16 10 Si 0.91 18.12 29.62 -169.99 -5.03 13.09 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 14 C 0.15 3.69 5.57 -155.02 -0.86 2.82 16 15 N -0.43 -9.49 4.40 -168.49 -0.74 -10.23 16 16 C 0.05 0.93 6.51 -1.74 -0.01 0.92 16 17 C -0.12 -1.77 5.64 -24.87 -0.14 -1.91 16 18 C -0.09 -1.35 2.57 -89.26 -0.23 -1.58 16 19 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.07 -0.94 1.50 -90.62 -0.14 -1.08 16 21 C -0.12 -1.40 4.95 -26.73 -0.13 -1.53 16 22 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 24 C -0.12 -1.17 5.92 -26.76 -0.16 -1.32 16 25 C -0.11 -1.24 5.02 -26.76 -0.13 -1.37 16 26 C 0.04 0.79 5.74 -2.76 -0.02 0.77 16 27 N -0.49 -11.88 8.56 -8.11 -0.07 -11.95 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.13 3.39 5.98 -52.49 -0.31 3.07 16 33 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 34 H 0.04 0.83 7.99 -51.93 -0.42 0.41 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 38 H 0.07 1.04 8.11 -51.93 -0.42 0.61 16 39 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 40 H 0.07 0.89 6.46 -51.93 -0.34 0.55 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.25 6.28 -51.93 -0.33 0.92 16 50 H 0.06 1.31 6.56 -51.93 -0.34 0.97 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -27.00 379.38 -12.41 -39.41 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.81 Total: 7.22 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -4.08 Total: -24.53 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.21 Total: -40.91 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.00 -12.41 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167067887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.635 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds