Wall clock time and date at job start Tue Mar 31 2020 11:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38682 * 119.27311 * 2 1 4 4 C 1.38009 * 119.62640 * 180.02562 * 3 2 1 5 5 C 1.41005 * 118.28287 * 359.75145 * 4 3 2 6 6 C 1.41018 * 120.71043 * 180.24639 * 5 4 3 7 7 H 1.07999 * 120.00098 * 197.90360 * 6 5 4 8 8 C 1.39948 * 120.00037 * 17.89758 * 6 5 4 9 9 N 1.30868 * 119.99833 * 22.67062 * 8 6 5 10 10 Si 1.86797 * 120.00159 * 202.67426 * 8 6 5 11 11 H 1.48499 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47396 * 120.00234 * 10 8 6 13 13 H 1.48506 * 109.47028 * 240.00138 * 10 8 6 14 14 C 1.41714 * 118.58413 * 0.48984 * 5 4 3 15 15 N 1.38096 * 119.90446 * 179.77858 * 14 5 4 16 16 C 1.48809 * 111.18599 * 99.77158 * 15 14 5 17 17 C 1.54939 * 103.34578 * 159.50611 * 16 15 14 18 18 C 1.54595 * 102.92154 * 322.69356 * 17 16 15 19 19 H 1.09005 * 110.38967 * 262.99768 * 18 17 16 20 20 C 1.52998 * 110.30782 * 140.87576 * 18 17 16 21 21 C 1.53001 * 109.47016 * 184.28356 * 20 18 17 22 22 C 1.53004 * 109.47298 * 180.02562 * 21 20 18 23 23 C 1.52994 * 109.47171 * 59.99555 * 22 21 20 24 24 C 1.53001 * 109.47372 * 300.00399 * 23 22 21 25 25 C 1.52995 * 109.47458 * 64.28362 * 20 18 17 26 26 C 1.47898 * 110.99786 * 217.11523 * 15 14 5 27 27 N 1.31971 * 119.28221 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47327 * 269.97393 * 1 2 3 29 29 H 1.08999 * 109.47392 * 29.97878 * 1 2 3 30 30 H 1.09007 * 109.46763 * 149.98035 * 1 2 3 31 31 H 1.07997 * 120.18763 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.86152 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00450 * 179.97438 * 9 8 6 34 34 H 1.09000 * 110.51900 * 41.07643 * 16 15 14 35 35 H 1.09001 * 110.69968 * 278.02150 * 16 15 14 36 36 H 1.09000 * 110.72357 * 204.33792 * 17 16 15 37 37 H 1.09005 * 110.72569 * 81.05060 * 17 16 15 38 38 H 1.09003 * 109.47275 * 304.28237 * 20 18 17 39 39 H 1.09010 * 109.47161 * 299.99396 * 21 20 18 40 40 H 1.08995 * 109.47276 * 59.99780 * 21 20 18 41 41 H 1.09003 * 109.47048 * 299.99916 * 22 21 20 42 42 H 1.08998 * 109.47243 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47077 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.47328 * 60.00189 * 23 22 21 45 45 H 1.09003 * 109.47002 * 299.99735 * 24 23 22 46 46 H 1.09005 * 109.47303 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47251 * 299.99827 * 25 20 18 48 48 H 1.09006 * 109.47467 * 59.99651 * 25 20 18 49 49 H 1.08998 * 109.92045 * 94.80507 * 26 15 14 50 50 H 1.09000 * 109.91587 * 333.69859 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2182 -0.0005 5 6 4.2409 -0.0193 0.0043 6 6 5.6502 -0.0704 0.0092 7 1 6.1586 -0.9799 -0.2747 8 6 6.3899 1.0577 0.3819 9 7 5.8419 1.9821 1.1287 10 14 8.1595 1.2438 -0.1867 11 1 8.5398 0.0703 -1.0134 12 1 8.2922 2.4828 -0.9943 13 1 9.0535 1.3259 0.9963 14 6 3.4737 -1.2108 -0.0011 15 7 4.1074 -2.4378 -0.0012 16 6 4.1397 -3.0265 1.3651 17 6 4.3688 -4.5356 1.0990 18 6 3.5322 -4.7928 -0.1753 19 1 2.5554 -5.1993 0.0873 20 6 4.2711 -5.7514 -1.1112 21 6 3.4779 -5.9089 -2.4100 22 6 4.2165 -6.8681 -3.3456 23 6 4.3608 -8.2319 -2.6676 24 6 5.1540 -8.0745 -1.3688 25 6 4.4159 -7.1155 -0.4335 26 6 3.3756 -3.4122 -0.8393 27 7 2.1524 -1.1511 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6363 2.1399 0.0004 32 1 4.1134 2.1487 -0.0010 33 1 6.3546 2.7638 1.3873 34 1 3.1888 -2.8655 1.8730 35 1 4.9626 -2.6089 1.9452 36 1 3.9985 -5.1345 1.9310 37 1 5.4238 -4.7390 0.9153 38 1 5.2596 -5.3505 -1.3355 39 1 2.4894 -6.3100 -2.1857 40 1 3.3747 -4.9372 -2.8928 41 1 5.2051 -6.4675 -3.5700 42 1 3.6511 -6.9806 -4.2707 43 1 4.8874 -8.9151 -3.3340 44 1 3.3722 -8.6326 -2.4432 45 1 6.1426 -7.6739 -1.5932 46 1 5.2564 -9.0461 -0.8855 47 1 4.9811 -7.0033 0.4918 48 1 3.4274 -7.5165 -0.2091 49 1 3.8010 -3.4324 -1.8426 50 1 2.3210 -3.1413 -0.8885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167067887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:13 Heat of formation + Delta-G solvation = -7.687568 kcal Electronic energy + Delta-G solvation = -26981.863883 eV Core-core repulsion = 23585.474041 eV Total energy + Delta-G solvation = -3396.389843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19501 -39.92509 -38.17434 -36.12593 -34.34347 -32.70726 -31.96737 -31.64106 -30.01834 -29.54257 -28.49650 -25.87338 -24.23310 -23.43318 -22.89303 -22.41540 -21.48962 -20.72189 -20.53595 -19.21314 -17.67922 -17.50667 -16.88190 -16.26779 -15.70977 -15.35636 -15.32571 -15.10769 -14.97538 -14.72052 -14.45958 -14.26363 -13.94080 -13.72543 -13.61108 -13.44181 -13.32192 -13.18896 -13.04956 -12.88024 -12.63415 -12.55686 -12.45520 -12.14927 -12.03478 -11.99573 -11.93173 -11.85542 -11.67223 -11.46904 -11.20218 -11.09660 -10.73014 -10.71425 -10.26949 -9.98587 -9.50198 -9.06107 -8.64745 -6.28464 0.75489 1.02573 1.38243 1.50102 1.55363 2.18823 2.66814 3.25518 3.57686 3.71330 3.73236 3.83880 4.00776 4.13187 4.16005 4.25412 4.42366 4.44883 4.49844 4.53914 4.57581 4.63615 4.72378 4.74699 4.76159 4.80310 4.81420 4.87491 4.93374 4.95700 5.01688 5.05051 5.07456 5.13190 5.16404 5.22376 5.25506 5.28876 5.33095 5.33693 5.35769 5.38337 5.48033 5.50960 5.58618 5.69311 5.74833 5.85632 6.14164 6.16881 6.43862 6.70155 6.79459 7.11211 7.75906 8.20395 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.004193 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.644992 B = 6675.720503 C = 8153.556380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.027 4.027 3 C -0.152 4.152 4 C -0.170 4.170 5 C 0.054 3.946 6 C -0.443 4.443 7 H 0.086 0.914 8 C 0.036 3.964 9 N -0.809 5.809 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.263 1.263 13 H -0.263 1.263 14 C 0.138 3.862 15 N -0.448 5.448 16 C 0.047 3.953 17 C -0.101 4.101 18 C -0.079 4.079 19 H 0.074 0.926 20 C -0.067 4.067 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.109 4.109 26 C 0.046 3.954 27 N -0.496 5.496 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.292 0.708 34 H 0.021 0.979 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -14.203 -3.497 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.166 4.166 3 C -0.172 4.172 4 C -0.196 4.196 5 C 0.048 3.952 6 C -0.471 4.471 7 H 0.104 0.896 8 C -0.181 4.181 9 N -0.433 5.433 10 Si 0.801 3.199 11 H -0.182 1.182 12 H -0.187 1.187 13 H -0.188 1.188 14 C -0.095 4.095 15 N -0.170 5.170 16 C -0.079 4.079 17 C -0.139 4.139 18 C -0.098 4.098 19 H 0.093 0.907 20 C -0.086 4.086 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.081 4.081 27 N -0.209 5.209 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.848 -14.646 -3.559 15.096 hybrid contribution 0.267 1.610 0.261 1.653 sum -0.581 -13.036 -3.298 13.459 Atomic orbital electron populations 1.20282 0.88480 1.02026 1.01412 1.20787 0.96803 0.87909 1.11142 1.21698 0.94800 0.98333 1.02365 1.21739 0.93561 0.98354 1.05984 1.18424 0.94919 0.90862 0.91019 1.19729 0.91182 0.98783 1.37393 0.89595 1.26903 1.05404 0.94018 0.91760 1.69886 1.40722 1.09031 1.23685 0.85167 0.75913 0.79497 0.79283 1.18201 1.18741 1.18773 1.19746 0.86858 0.91381 1.11481 1.62177 1.46474 0.99730 1.08634 1.23156 0.98735 0.95764 0.90286 1.22504 1.00904 0.92863 0.97597 1.21955 0.99093 0.93588 0.95124 0.90736 1.21098 0.98270 0.94913 0.94274 1.21608 0.99096 0.99021 0.95538 1.21520 1.00242 0.95635 0.98112 1.21524 1.00618 0.96471 0.96718 1.21523 0.98783 0.99394 0.95835 1.21544 1.00937 0.93786 0.98375 1.22878 0.97000 0.91365 0.96888 1.66776 1.10721 1.30715 1.12651 0.92233 0.90607 0.92475 0.85949 0.86261 0.89667 0.96087 0.92057 0.89365 0.90280 0.92258 0.91876 0.93418 0.92637 0.91660 0.91325 0.91777 0.92498 0.90985 0.91619 0.91731 0.92045 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.29 10.15 71.23 0.72 -1.57 16 2 C -0.03 -1.25 6.79 42.64 0.29 -0.96 16 3 C -0.15 -7.27 9.69 22.32 0.22 -7.05 16 4 C -0.17 -9.11 8.86 22.89 0.20 -8.91 16 5 C 0.05 2.97 5.66 -21.06 -0.12 2.85 16 6 C -0.44 -23.83 8.76 23.37 0.20 -23.62 16 7 H 0.09 4.64 7.52 -2.91 -0.02 4.62 16 8 C 0.04 1.79 5.12 85.25 0.44 2.23 16 9 N -0.81 -41.03 10.87 21.83 0.24 -40.79 16 10 Si 0.98 37.60 29.62 68.60 2.03 39.63 16 11 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 14 C 0.14 7.19 5.57 134.06 0.75 7.94 16 15 N -0.45 -20.42 4.40 -686.97 -3.02 -23.44 16 16 C 0.05 1.92 6.51 86.60 0.56 2.49 16 17 C -0.10 -3.00 5.64 31.80 0.18 -2.82 16 18 C -0.08 -2.31 2.57 -9.92 -0.03 -2.34 16 19 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 20 C -0.07 -1.63 1.50 -10.80 -0.02 -1.65 16 21 C -0.12 -2.67 4.95 30.60 0.15 -2.52 16 22 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 23 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16 24 C -0.12 -1.98 5.92 30.58 0.18 -1.80 16 25 C -0.11 -2.11 5.02 30.58 0.15 -1.95 16 26 C 0.05 1.79 5.74 86.45 0.50 2.29 16 27 N -0.50 -24.86 8.56 -179.57 -1.54 -26.39 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.30 8.07 -2.39 -0.02 2.29 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 31 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.12 6.51 5.98 -2.91 -0.02 6.49 16 33 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 34 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.26 7.78 -2.38 -0.02 2.24 16 38 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.28 6.46 -2.39 -0.02 1.26 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.07 1.24 7.35 -2.39 -0.02 1.23 16 48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.06 2.40 6.28 -2.39 -0.01 2.39 16 50 H 0.04 1.78 6.56 -2.39 -0.02 1.77 16 Total: -1.00 -60.83 379.38 3.36 -57.48 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.90 Total: 34.72 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 4.75 Total: -41.20 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -4.32 Total: -90.63 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -60.83 3.36 -57.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167067887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.788 kcal (2) G-P(sol) polarization free energy of solvation -60.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds