Wall clock time and date at job start Tue Mar 31 2020 11:39:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38682 * 119.27311 * 2 1
4 4 C 1.38009 * 119.62640 * 180.02562 * 3 2 1
5 5 C 1.41005 * 118.28287 * 359.75145 * 4 3 2
6 6 C 1.41018 * 120.71043 * 180.24639 * 5 4 3
7 7 H 1.07999 * 120.00098 * 197.90360 * 6 5 4
8 8 C 1.39948 * 120.00037 * 17.89758 * 6 5 4
9 9 N 1.30868 * 119.99833 * 22.67062 * 8 6 5
10 10 Si 1.86797 * 120.00159 * 202.67426 * 8 6 5
11 11 H 1.48499 * 109.47113 * 359.97438 * 10 8 6
12 12 H 1.48497 * 109.47396 * 120.00234 * 10 8 6
13 13 H 1.48506 * 109.47028 * 240.00138 * 10 8 6
14 14 C 1.41714 * 118.58413 * 0.48984 * 5 4 3
15 15 N 1.38096 * 119.90446 * 179.77858 * 14 5 4
16 16 C 1.48809 * 111.18599 * 99.77158 * 15 14 5
17 17 C 1.54939 * 103.34578 * 159.50611 * 16 15 14
18 18 C 1.54595 * 102.92154 * 322.69356 * 17 16 15
19 19 H 1.09005 * 110.38967 * 262.99768 * 18 17 16
20 20 C 1.52998 * 110.30782 * 140.87576 * 18 17 16
21 21 C 1.53001 * 109.47016 * 184.28356 * 20 18 17
22 22 C 1.53004 * 109.47298 * 180.02562 * 21 20 18
23 23 C 1.52994 * 109.47171 * 59.99555 * 22 21 20
24 24 C 1.53001 * 109.47372 * 300.00399 * 23 22 21
25 25 C 1.52995 * 109.47458 * 64.28362 * 20 18 17
26 26 C 1.47898 * 110.99786 * 217.11523 * 15 14 5
27 27 N 1.31971 * 119.28221 * 180.02562 * 2 1 3
28 28 H 1.09000 * 109.47327 * 269.97393 * 1 2 3
29 29 H 1.08999 * 109.47392 * 29.97878 * 1 2 3
30 30 H 1.09007 * 109.46763 * 149.98035 * 1 2 3
31 31 H 1.07997 * 120.18763 * 0.02562 * 3 2 1
32 32 H 1.08001 * 120.86152 * 179.97438 * 4 3 2
33 33 H 0.96998 * 120.00450 * 179.97438 * 9 8 6
34 34 H 1.09000 * 110.51900 * 41.07643 * 16 15 14
35 35 H 1.09001 * 110.69968 * 278.02150 * 16 15 14
36 36 H 1.09000 * 110.72357 * 204.33792 * 17 16 15
37 37 H 1.09005 * 110.72569 * 81.05060 * 17 16 15
38 38 H 1.09003 * 109.47275 * 304.28237 * 20 18 17
39 39 H 1.09010 * 109.47161 * 299.99396 * 21 20 18
40 40 H 1.08995 * 109.47276 * 59.99780 * 21 20 18
41 41 H 1.09003 * 109.47048 * 299.99916 * 22 21 20
42 42 H 1.08998 * 109.47243 * 179.97438 * 22 21 20
43 43 H 1.09001 * 109.47077 * 180.02562 * 23 22 21
44 44 H 1.09006 * 109.47328 * 60.00189 * 23 22 21
45 45 H 1.09003 * 109.47002 * 299.99735 * 24 23 22
46 46 H 1.09005 * 109.47303 * 179.97438 * 24 23 22
47 47 H 1.09002 * 109.47251 * 299.99827 * 25 20 18
48 48 H 1.09006 * 109.47467 * 59.99651 * 25 20 18
49 49 H 1.08998 * 109.92045 * 94.80507 * 26 15 14
50 50 H 1.09000 * 109.91587 * 333.69859 * 26 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1851 1.2097 0.0000
4 6 3.5651 1.2182 -0.0005
5 6 4.2409 -0.0193 0.0043
6 6 5.6502 -0.0704 0.0092
7 1 6.1586 -0.9799 -0.2747
8 6 6.3899 1.0577 0.3819
9 7 5.8419 1.9821 1.1287
10 14 8.1595 1.2438 -0.1867
11 1 8.5398 0.0703 -1.0134
12 1 8.2922 2.4828 -0.9943
13 1 9.0535 1.3259 0.9963
14 6 3.4737 -1.2108 -0.0011
15 7 4.1074 -2.4378 -0.0012
16 6 4.1397 -3.0265 1.3651
17 6 4.3688 -4.5356 1.0990
18 6 3.5322 -4.7928 -0.1753
19 1 2.5554 -5.1993 0.0873
20 6 4.2711 -5.7514 -1.1112
21 6 3.4779 -5.9089 -2.4100
22 6 4.2165 -6.8681 -3.3456
23 6 4.3608 -8.2319 -2.6676
24 6 5.1540 -8.0745 -1.3688
25 6 4.4159 -7.1155 -0.4335
26 6 3.3756 -3.4122 -0.8393
27 7 2.1524 -1.1511 -0.0005
28 1 -0.3634 -0.0005 1.0276
29 1 -0.3634 0.8902 -0.5135
30 1 -0.3633 -0.8899 -0.5142
31 1 1.6363 2.1399 0.0004
32 1 4.1134 2.1487 -0.0010
33 1 6.3546 2.7638 1.3873
34 1 3.1888 -2.8655 1.8730
35 1 4.9626 -2.6089 1.9452
36 1 3.9985 -5.1345 1.9310
37 1 5.4238 -4.7390 0.9153
38 1 5.2596 -5.3505 -1.3355
39 1 2.4894 -6.3100 -2.1857
40 1 3.3747 -4.9372 -2.8928
41 1 5.2051 -6.4675 -3.5700
42 1 3.6511 -6.9806 -4.2707
43 1 4.8874 -8.9151 -3.3340
44 1 3.3722 -8.6326 -2.4432
45 1 6.1426 -7.6739 -1.5932
46 1 5.2564 -9.0461 -0.8855
47 1 4.9811 -7.0033 0.4918
48 1 3.4274 -7.5165 -0.2091
49 1 3.8010 -3.4324 -1.8426
50 1 2.3210 -3.1413 -0.8885
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001167067887.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:13
Heat of formation + Delta-G solvation = -7.687568 kcal
Electronic energy + Delta-G solvation = -26981.863883 eV
Core-core repulsion = 23585.474041 eV
Total energy + Delta-G solvation = -3396.389843 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.19501 -39.92509 -38.17434 -36.12593 -34.34347 -32.70726 -31.96737 -31.64106
-30.01834 -29.54257 -28.49650 -25.87338 -24.23310 -23.43318 -22.89303 -22.41540
-21.48962 -20.72189 -20.53595 -19.21314 -17.67922 -17.50667 -16.88190 -16.26779
-15.70977 -15.35636 -15.32571 -15.10769 -14.97538 -14.72052 -14.45958 -14.26363
-13.94080 -13.72543 -13.61108 -13.44181 -13.32192 -13.18896 -13.04956 -12.88024
-12.63415 -12.55686 -12.45520 -12.14927 -12.03478 -11.99573 -11.93173 -11.85542
-11.67223 -11.46904 -11.20218 -11.09660 -10.73014 -10.71425 -10.26949 -9.98587
-9.50198 -9.06107 -8.64745 -6.28464 0.75489 1.02573 1.38243 1.50102
1.55363 2.18823 2.66814 3.25518 3.57686 3.71330 3.73236 3.83880
4.00776 4.13187 4.16005 4.25412 4.42366 4.44883 4.49844 4.53914
4.57581 4.63615 4.72378 4.74699 4.76159 4.80310 4.81420 4.87491
4.93374 4.95700 5.01688 5.05051 5.07456 5.13190 5.16404 5.22376
5.25506 5.28876 5.33095 5.33693 5.35769 5.38337 5.48033 5.50960
5.58618 5.69311 5.74833 5.85632 6.14164 6.16881 6.43862 6.70155
6.79459 7.11211 7.75906 8.20395
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.012042 B = 0.004193 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2324.644992 B = 6675.720503 C = 8153.556380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.027 4.027
3 C -0.152 4.152
4 C -0.170 4.170
5 C 0.054 3.946
6 C -0.443 4.443
7 H 0.086 0.914
8 C 0.036 3.964
9 N -0.809 5.809
10 Si 0.981 3.019
11 H -0.259 1.259
12 H -0.263 1.263
13 H -0.263 1.263
14 C 0.138 3.862
15 N -0.448 5.448
16 C 0.047 3.953
17 C -0.101 4.101
18 C -0.079 4.079
19 H 0.074 0.926
20 C -0.067 4.067
21 C -0.115 4.115
22 C -0.118 4.118
23 C -0.116 4.116
24 C -0.118 4.118
25 C -0.109 4.109
26 C 0.046 3.954
27 N -0.496 5.496
28 H 0.059 0.941
29 H 0.075 0.925
30 H 0.056 0.944
31 H 0.123 0.877
32 H 0.120 0.880
33 H 0.292 0.708
34 H 0.021 0.979
35 H 0.061 0.939
36 H 0.088 0.912
37 H 0.079 0.921
38 H 0.059 0.941
39 H 0.063 0.937
40 H 0.047 0.953
41 H 0.055 0.945
42 H 0.065 0.935
43 H 0.068 0.932
44 H 0.063 0.937
45 H 0.056 0.944
46 H 0.071 0.929
47 H 0.065 0.935
48 H 0.064 0.936
49 H 0.061 0.939
50 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.929 -14.203 -3.497 14.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.166 4.166
3 C -0.172 4.172
4 C -0.196 4.196
5 C 0.048 3.952
6 C -0.471 4.471
7 H 0.104 0.896
8 C -0.181 4.181
9 N -0.433 5.433
10 Si 0.801 3.199
11 H -0.182 1.182
12 H -0.187 1.187
13 H -0.188 1.188
14 C -0.095 4.095
15 N -0.170 5.170
16 C -0.079 4.079
17 C -0.139 4.139
18 C -0.098 4.098
19 H 0.093 0.907
20 C -0.086 4.086
21 C -0.153 4.153
22 C -0.155 4.155
23 C -0.153 4.153
24 C -0.155 4.155
25 C -0.146 4.146
26 C -0.081 4.081
27 N -0.209 5.209
28 H 0.078 0.922
29 H 0.094 0.906
30 H 0.075 0.925
31 H 0.141 0.859
32 H 0.137 0.863
33 H 0.103 0.897
34 H 0.039 0.961
35 H 0.079 0.921
36 H 0.106 0.894
37 H 0.097 0.903
38 H 0.077 0.923
39 H 0.081 0.919
40 H 0.066 0.934
41 H 0.074 0.926
42 H 0.083 0.917
43 H 0.087 0.913
44 H 0.082 0.918
45 H 0.075 0.925
46 H 0.090 0.910
47 H 0.084 0.916
48 H 0.083 0.917
49 H 0.080 0.920
50 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -0.848 -14.646 -3.559 15.096
hybrid contribution 0.267 1.610 0.261 1.653
sum -0.581 -13.036 -3.298 13.459
Atomic orbital electron populations
1.20282 0.88480 1.02026 1.01412 1.20787 0.96803 0.87909 1.11142
1.21698 0.94800 0.98333 1.02365 1.21739 0.93561 0.98354 1.05984
1.18424 0.94919 0.90862 0.91019 1.19729 0.91182 0.98783 1.37393
0.89595 1.26903 1.05404 0.94018 0.91760 1.69886 1.40722 1.09031
1.23685 0.85167 0.75913 0.79497 0.79283 1.18201 1.18741 1.18773
1.19746 0.86858 0.91381 1.11481 1.62177 1.46474 0.99730 1.08634
1.23156 0.98735 0.95764 0.90286 1.22504 1.00904 0.92863 0.97597
1.21955 0.99093 0.93588 0.95124 0.90736 1.21098 0.98270 0.94913
0.94274 1.21608 0.99096 0.99021 0.95538 1.21520 1.00242 0.95635
0.98112 1.21524 1.00618 0.96471 0.96718 1.21523 0.98783 0.99394
0.95835 1.21544 1.00937 0.93786 0.98375 1.22878 0.97000 0.91365
0.96888 1.66776 1.10721 1.30715 1.12651 0.92233 0.90607 0.92475
0.85949 0.86261 0.89667 0.96087 0.92057 0.89365 0.90280 0.92258
0.91876 0.93418 0.92637 0.91660 0.91325 0.91777 0.92498 0.90985
0.91619 0.91731 0.92045 0.94013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -2.29 10.15 71.23 0.72 -1.57 16
2 C -0.03 -1.25 6.79 42.64 0.29 -0.96 16
3 C -0.15 -7.27 9.69 22.32 0.22 -7.05 16
4 C -0.17 -9.11 8.86 22.89 0.20 -8.91 16
5 C 0.05 2.97 5.66 -21.06 -0.12 2.85 16
6 C -0.44 -23.83 8.76 23.37 0.20 -23.62 16
7 H 0.09 4.64 7.52 -2.91 -0.02 4.62 16
8 C 0.04 1.79 5.12 85.25 0.44 2.23 16
9 N -0.81 -41.03 10.87 21.83 0.24 -40.79 16
10 Si 0.98 37.60 29.62 68.60 2.03 39.63 16
11 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16
13 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16
14 C 0.14 7.19 5.57 134.06 0.75 7.94 16
15 N -0.45 -20.42 4.40 -686.97 -3.02 -23.44 16
16 C 0.05 1.92 6.51 86.60 0.56 2.49 16
17 C -0.10 -3.00 5.64 31.80 0.18 -2.82 16
18 C -0.08 -2.31 2.57 -9.92 -0.03 -2.34 16
19 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16
20 C -0.07 -1.63 1.50 -10.80 -0.02 -1.65 16
21 C -0.12 -2.67 4.95 30.60 0.15 -2.52 16
22 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16
23 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16
24 C -0.12 -1.98 5.92 30.58 0.18 -1.80 16
25 C -0.11 -2.11 5.02 30.58 0.15 -1.95 16
26 C 0.05 1.79 5.74 86.45 0.50 2.29 16
27 N -0.50 -24.86 8.56 -179.57 -1.54 -26.39 16
28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
29 H 0.08 2.30 8.07 -2.39 -0.02 2.29 16
30 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16
31 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16
32 H 0.12 6.51 5.98 -2.91 -0.02 6.49 16
33 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16
34 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16
35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16
36 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16
37 H 0.08 2.26 7.78 -2.38 -0.02 2.24 16
38 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16
39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16
40 H 0.05 1.28 6.46 -2.39 -0.02 1.26 16
41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
44 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16
45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
46 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
47 H 0.07 1.24 7.35 -2.39 -0.02 1.23 16
48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16
49 H 0.06 2.40 6.28 -2.39 -0.01 2.39 16
50 H 0.04 1.78 6.56 -2.39 -0.02 1.77 16
Total: -1.00 -60.83 379.38 3.36 -57.48
By element:
Atomic # 1 Polarization: 33.82 SS G_CDS: 0.90 Total: 34.72 kcal
Atomic # 6 Polarization: -45.95 SS G_CDS: 4.75 Total: -41.20 kcal
Atomic # 7 Polarization: -86.31 SS G_CDS: -4.32 Total: -90.63 kcal
Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal
Total: -60.83 3.36 -57.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167067887.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.788 kcal
(2) G-P(sol) polarization free energy of solvation -60.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.688 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds