Wall clock time and date at job start Tue Mar 31 2020 11:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38675 * 119.27312 * 2 1 4 4 C 1.38014 * 119.62196 * 180.02562 * 3 2 1 5 5 C 1.41002 * 118.28432 * 359.97438 * 4 3 2 6 6 C 1.41013 * 120.70623 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99578 * 155.52675 * 6 5 4 8 8 C 1.39946 * 120.00399 * 335.53559 * 6 5 4 9 9 N 1.30870 * 119.99497 * 342.46114 * 8 6 5 10 10 Si 1.86794 * 120.00345 * 162.46552 * 8 6 5 11 11 H 1.48502 * 109.47030 * 59.99919 * 10 8 6 12 12 H 1.48501 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47197 * 299.99975 * 10 8 6 14 14 C 1.41711 * 118.58500 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90470 * 180.02562 * 14 5 4 16 16 C 1.47844 * 110.99908 * 245.20204 * 15 14 5 17 17 C 1.54899 * 104.79451 * 213.63525 * 16 15 14 18 18 C 1.55135 * 101.65596 * 37.06802 * 17 16 15 19 19 H 1.08998 * 110.85537 * 82.79756 * 18 17 16 20 20 C 1.53003 * 110.70763 * 205.96406 * 18 17 16 21 21 C 1.53000 * 109.47026 * 293.60160 * 20 18 17 22 22 C 1.53003 * 109.47026 * 180.02562 * 21 20 18 23 23 C 1.53006 * 109.46982 * 59.99901 * 22 21 20 24 24 C 1.52993 * 109.46727 * 299.99845 * 23 22 21 25 25 C 1.52995 * 109.47615 * 60.00565 * 24 23 22 26 26 C 1.47439 * 111.00185 * 124.35696 * 15 14 5 27 27 N 1.31967 * 119.27157 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46944 * 90.00053 * 1 2 3 29 29 H 1.09002 * 109.47114 * 210.00401 * 1 2 3 30 30 H 1.09000 * 109.47034 * 330.00518 * 1 2 3 31 31 H 1.07999 * 120.19086 * 359.71769 * 3 2 1 32 32 H 1.08000 * 120.85689 * 179.97438 * 4 3 2 33 33 H 0.97003 * 119.99901 * 180.02562 * 9 8 6 34 34 H 1.09005 * 110.36926 * 332.46778 * 16 15 14 35 35 H 1.09004 * 110.37446 * 94.80055 * 16 15 14 36 36 H 1.09006 * 110.98857 * 278.97347 * 17 16 15 37 37 H 1.09007 * 111.02161 * 155.17872 * 17 16 15 38 38 H 1.08997 * 109.47085 * 53.59904 * 20 18 17 39 39 H 1.09007 * 109.46766 * 299.99809 * 21 20 18 40 40 H 1.08998 * 109.47710 * 59.99456 * 21 20 18 41 41 H 1.08997 * 109.47085 * 299.99744 * 22 21 20 42 42 H 1.08998 * 109.46780 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46372 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.46957 * 60.00317 * 23 22 21 45 45 H 1.09001 * 109.47787 * 299.99963 * 24 23 22 46 46 H 1.09009 * 109.46755 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47815 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47035 * 59.98937 * 25 24 23 49 49 H 1.08998 * 109.89083 * 242.66249 * 26 15 14 50 50 H 1.08999 * 109.88839 * 3.68606 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0705 -0.0005 7 1 6.1590 -0.9409 0.3870 8 6 6.3894 1.0065 -0.5024 9 7 5.8124 1.8941 -1.2718 10 14 8.1996 1.1772 -0.0744 11 1 8.9368 -0.0189 -0.5551 12 1 8.7501 2.3925 -0.7265 13 1 8.3512 1.2933 1.3984 14 6 3.4737 -1.2109 0.0006 15 7 4.1073 -2.4379 0.0012 16 6 3.8356 -3.1752 -1.2512 17 6 3.7947 -4.6657 -0.8318 18 6 3.1085 -4.5819 0.5570 19 1 2.0247 -4.5333 0.4520 20 6 3.5125 -5.7698 1.4327 21 6 2.9520 -7.0603 0.8316 22 6 3.3555 -8.2481 1.7076 23 6 2.7934 -8.0560 3.1177 24 6 3.3539 -6.7655 3.7186 25 6 2.9505 -5.5777 2.8427 26 6 3.6601 -3.2631 1.1382 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6364 2.1399 -0.0046 32 1 4.1135 2.1485 -0.0010 33 1 6.3249 2.6405 -1.6200 34 1 2.8756 -2.8720 -1.6692 35 1 4.6350 -3.0056 -1.9725 36 1 4.8014 -5.0749 -0.7459 37 1 3.1955 -5.2518 -1.5288 38 1 4.5996 -5.8332 1.4799 39 1 1.8648 -6.9969 0.7843 40 1 3.3519 -7.1969 -0.1731 41 1 4.4425 -8.3117 1.7553 42 1 2.9558 -9.1674 1.2796 43 1 3.0813 -8.9021 3.7418 44 1 1.7063 -7.9925 3.0699 45 1 4.4411 -6.8291 3.7663 46 1 2.9539 -6.6289 4.7233 47 1 3.3495 -4.6582 3.2711 48 1 1.8634 -5.5142 2.7950 49 1 4.5018 -3.4722 1.7984 50 1 2.8774 -2.7419 1.6894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167067888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:17 Heat of formation + Delta-G solvation = 0.919955 kcal Electronic energy + Delta-G solvation = -26975.348477 eV Core-core repulsion = 23579.331884 eV Total energy + Delta-G solvation = -3396.016593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.70382 -38.52158 -36.83557 -34.19326 -32.92280 -30.95519 -30.83712 -30.33185 -28.59076 -27.72017 -27.19138 -24.10001 -22.85436 -22.46192 -21.52176 -20.61042 -19.91576 -19.79147 -19.37901 -17.25696 -16.03965 -15.87001 -15.48757 -14.72272 -14.34397 -14.11980 -14.06232 -13.92713 -13.81091 -13.19244 -12.82119 -12.80659 -12.47790 -12.38658 -12.32481 -12.16019 -12.03016 -11.67080 -11.42485 -11.34008 -11.23732 -11.12587 -11.02460 -10.92485 -10.87582 -10.77135 -10.63027 -10.48797 -10.43447 -10.10291 -9.82957 -9.76195 -9.73088 -9.27933 -8.31522 -8.05942 -7.45220 -7.33474 -6.80130 -4.34690 2.61412 2.91958 3.04886 3.08633 3.22261 3.89883 4.57323 4.66874 4.70894 4.75823 4.87646 5.09075 5.15702 5.26311 5.38250 5.51332 5.52206 5.54886 5.59269 5.66296 5.70519 5.77199 5.82770 5.96183 5.99840 6.00168 6.08696 6.10768 6.13901 6.16306 6.21725 6.28535 6.31970 6.35132 6.40536 6.43576 6.49868 6.53794 6.58233 6.61488 6.67265 6.84770 6.92483 7.01156 7.15672 7.20719 7.65218 7.74975 7.84230 8.05195 8.36072 8.64584 8.73830 8.99756 9.64814 10.09163 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003975 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.886115 B = 7042.864392 C = 8294.927598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.012 4.012 3 C -0.146 4.146 4 C -0.138 4.138 5 C 0.091 3.909 6 C -0.416 4.416 7 H 0.093 0.907 8 C 0.070 3.930 9 N -0.791 5.791 10 Si 0.912 3.088 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.263 1.263 14 C 0.152 3.848 15 N -0.446 5.446 16 C 0.055 3.945 17 C -0.121 4.121 18 C -0.098 4.098 19 H 0.072 0.928 20 C -0.073 4.073 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.116 4.116 26 C 0.061 3.939 27 N -0.485 5.485 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.282 0.718 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -12.447 4.421 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.152 4.152 3 C -0.167 4.167 4 C -0.164 4.164 5 C 0.085 3.915 6 C -0.445 4.445 7 H 0.111 0.889 8 C -0.148 4.148 9 N -0.415 5.415 10 Si 0.736 3.264 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.187 1.187 14 C -0.080 4.080 15 N -0.167 5.167 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.117 4.117 19 H 0.090 0.910 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.066 4.066 27 N -0.197 5.197 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.845 -12.877 4.311 13.874 hybrid contribution 0.398 0.969 -0.066 1.049 sum -2.447 -11.908 4.246 12.877 Atomic orbital electron populations 1.20256 0.91991 1.00501 1.00161 1.19977 0.94366 0.88368 1.12534 1.21403 0.95354 0.96873 1.03034 1.21621 0.92359 0.98706 1.03689 1.18082 0.94139 0.89853 0.89405 1.19542 0.90952 1.01440 1.32589 0.88921 1.26080 1.01447 0.94589 0.92704 1.69831 1.38922 1.10776 1.22010 0.86292 0.81562 0.78517 0.79992 1.18741 1.20449 1.18743 1.19479 0.86258 0.90347 1.11966 1.60992 1.53437 1.00825 1.01444 1.22939 1.00043 0.91258 0.92965 1.22735 1.00297 0.96755 0.96094 1.22376 0.99918 0.94593 0.94835 0.90972 1.21131 1.00113 0.93711 0.94189 1.21583 1.00682 0.94142 0.98641 1.21534 1.00737 0.97941 0.95423 1.21532 1.00379 0.97450 0.96260 1.21534 1.00755 0.94853 0.98509 1.21602 1.00783 0.97903 0.95014 1.22783 0.98112 0.91718 0.94023 1.66734 1.11129 1.30135 1.11697 0.93509 0.92989 0.93120 0.88596 0.85606 0.90666 0.93435 0.91144 0.91220 0.91860 0.91146 0.92288 0.91980 0.92149 0.92505 0.92578 0.92241 0.92129 0.92405 0.91615 0.92238 0.91815 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.01 0.37 -0.95 16 2 C -0.01 -0.28 6.79 -82.37 -0.56 -0.84 16 3 C -0.15 -3.44 9.69 -39.50 -0.38 -3.83 16 4 C -0.14 -3.54 8.80 -38.62 -0.34 -3.88 16 5 C 0.09 2.42 5.60 -106.47 -0.60 1.82 16 6 C -0.42 -10.81 8.70 -37.89 -0.33 -11.14 16 7 H 0.09 2.39 7.60 -52.48 -0.40 1.99 16 8 C 0.07 1.71 5.17 -17.32 -0.09 1.63 16 9 N -0.79 -19.89 10.98 55.55 0.61 -19.28 16 10 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 11 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 14 C 0.15 3.78 5.19 -155.02 -0.80 2.97 16 15 N -0.45 -9.77 4.35 -169.48 -0.74 -10.51 16 16 C 0.06 1.08 6.63 -2.30 -0.02 1.07 16 17 C -0.12 -1.85 5.68 -24.60 -0.14 -1.99 16 18 C -0.10 -1.49 2.49 -88.80 -0.22 -1.72 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.07 -0.90 1.58 -90.62 -0.14 -1.05 16 21 C -0.11 -1.23 5.05 -26.73 -0.14 -1.36 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 24 C -0.12 -1.21 5.92 -26.74 -0.16 -1.37 16 25 C -0.12 -1.38 4.97 -26.73 -0.13 -1.52 16 26 C 0.06 1.15 5.27 -2.84 -0.01 1.14 16 27 N -0.49 -11.76 8.94 -8.11 -0.07 -11.83 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.13 3.28 6.26 -52.49 -0.33 2.96 16 33 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 34 H 0.05 1.01 7.42 -51.93 -0.39 0.63 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 37 H 0.06 0.87 8.12 -51.92 -0.42 0.44 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.67 7.48 -51.93 -0.39 0.28 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.07 0.85 7.05 -51.93 -0.37 0.49 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.16 7.47 -51.93 -0.39 0.77 16 50 H 0.05 1.13 7.15 -51.93 -0.37 0.76 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -27.07 381.51 -12.43 -39.49 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.94 Total: 6.60 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -4.01 Total: -23.58 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.20 Total: -41.61 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.07 -12.43 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167067888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.414 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds