Wall clock time and date at job start Tue Mar 31 2020 11:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38675 * 119.27312 * 2 1 4 4 C 1.38014 * 119.62196 * 180.02562 * 3 2 1 5 5 C 1.41002 * 118.28432 * 359.97438 * 4 3 2 6 6 C 1.41013 * 120.70623 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99578 * 155.52675 * 6 5 4 8 8 C 1.39946 * 120.00399 * 335.53559 * 6 5 4 9 9 N 1.30870 * 119.99497 * 342.46114 * 8 6 5 10 10 Si 1.86794 * 120.00345 * 162.46552 * 8 6 5 11 11 H 1.48502 * 109.47030 * 59.99919 * 10 8 6 12 12 H 1.48501 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47197 * 299.99975 * 10 8 6 14 14 C 1.41711 * 118.58500 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90470 * 180.02562 * 14 5 4 16 16 C 1.47844 * 110.99908 * 245.20204 * 15 14 5 17 17 C 1.54899 * 104.79451 * 213.63525 * 16 15 14 18 18 C 1.55135 * 101.65596 * 37.06802 * 17 16 15 19 19 H 1.08998 * 110.85537 * 82.79756 * 18 17 16 20 20 C 1.53003 * 110.70763 * 205.96406 * 18 17 16 21 21 C 1.53000 * 109.47026 * 293.60160 * 20 18 17 22 22 C 1.53003 * 109.47026 * 180.02562 * 21 20 18 23 23 C 1.53006 * 109.46982 * 59.99901 * 22 21 20 24 24 C 1.52993 * 109.46727 * 299.99845 * 23 22 21 25 25 C 1.52995 * 109.47615 * 60.00565 * 24 23 22 26 26 C 1.47439 * 111.00185 * 124.35696 * 15 14 5 27 27 N 1.31967 * 119.27157 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46944 * 90.00053 * 1 2 3 29 29 H 1.09002 * 109.47114 * 210.00401 * 1 2 3 30 30 H 1.09000 * 109.47034 * 330.00518 * 1 2 3 31 31 H 1.07999 * 120.19086 * 359.71769 * 3 2 1 32 32 H 1.08000 * 120.85689 * 179.97438 * 4 3 2 33 33 H 0.97003 * 119.99901 * 180.02562 * 9 8 6 34 34 H 1.09005 * 110.36926 * 332.46778 * 16 15 14 35 35 H 1.09004 * 110.37446 * 94.80055 * 16 15 14 36 36 H 1.09006 * 110.98857 * 278.97347 * 17 16 15 37 37 H 1.09007 * 111.02161 * 155.17872 * 17 16 15 38 38 H 1.08997 * 109.47085 * 53.59904 * 20 18 17 39 39 H 1.09007 * 109.46766 * 299.99809 * 21 20 18 40 40 H 1.08998 * 109.47710 * 59.99456 * 21 20 18 41 41 H 1.08997 * 109.47085 * 299.99744 * 22 21 20 42 42 H 1.08998 * 109.46780 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46372 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.46957 * 60.00317 * 23 22 21 45 45 H 1.09001 * 109.47787 * 299.99963 * 24 23 22 46 46 H 1.09009 * 109.46755 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47815 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47035 * 59.98937 * 25 24 23 49 49 H 1.08998 * 109.89083 * 242.66249 * 26 15 14 50 50 H 1.08999 * 109.88839 * 3.68606 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0705 -0.0005 7 1 6.1590 -0.9409 0.3870 8 6 6.3894 1.0065 -0.5024 9 7 5.8124 1.8941 -1.2718 10 14 8.1996 1.1772 -0.0744 11 1 8.9368 -0.0189 -0.5551 12 1 8.7501 2.3925 -0.7265 13 1 8.3512 1.2933 1.3984 14 6 3.4737 -1.2109 0.0006 15 7 4.1073 -2.4379 0.0012 16 6 3.8356 -3.1752 -1.2512 17 6 3.7947 -4.6657 -0.8318 18 6 3.1085 -4.5819 0.5570 19 1 2.0247 -4.5333 0.4520 20 6 3.5125 -5.7698 1.4327 21 6 2.9520 -7.0603 0.8316 22 6 3.3555 -8.2481 1.7076 23 6 2.7934 -8.0560 3.1177 24 6 3.3539 -6.7655 3.7186 25 6 2.9505 -5.5777 2.8427 26 6 3.6601 -3.2631 1.1382 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6364 2.1399 -0.0046 32 1 4.1135 2.1485 -0.0010 33 1 6.3249 2.6405 -1.6200 34 1 2.8756 -2.8720 -1.6692 35 1 4.6350 -3.0056 -1.9725 36 1 4.8014 -5.0749 -0.7459 37 1 3.1955 -5.2518 -1.5288 38 1 4.5996 -5.8332 1.4799 39 1 1.8648 -6.9969 0.7843 40 1 3.3519 -7.1969 -0.1731 41 1 4.4425 -8.3117 1.7553 42 1 2.9558 -9.1674 1.2796 43 1 3.0813 -8.9021 3.7418 44 1 1.7063 -7.9925 3.0699 45 1 4.4411 -6.8291 3.7663 46 1 2.9539 -6.6289 4.7233 47 1 3.3495 -4.6582 3.2711 48 1 1.8634 -5.5142 2.7950 49 1 4.5018 -3.4722 1.7984 50 1 2.8774 -2.7419 1.6894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167067888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:16 Heat of formation + Delta-G solvation = -10.171866 kcal Electronic energy + Delta-G solvation = -26975.829454 eV Core-core repulsion = 23579.331884 eV Total energy + Delta-G solvation = -3396.497570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22618 -39.90474 -38.23052 -36.06326 -34.29815 -32.70745 -31.94234 -31.64561 -30.11189 -29.46203 -28.55958 -25.85659 -24.17352 -23.45088 -22.97259 -22.41025 -21.41676 -20.83764 -20.59879 -19.17123 -17.69821 -17.44885 -16.90300 -16.26828 -15.71878 -15.48064 -15.32645 -15.05871 -14.94825 -14.73543 -14.42474 -14.13445 -14.00932 -13.83169 -13.59981 -13.44493 -13.32174 -13.16140 -13.00711 -12.96063 -12.65729 -12.58299 -12.47291 -12.18604 -12.04374 -11.98674 -11.98130 -11.84615 -11.66624 -11.49364 -11.25741 -11.11328 -10.77628 -10.72341 -10.19282 -9.97400 -9.27020 -9.13966 -8.64312 -6.29762 0.75349 1.03020 1.38960 1.49927 1.55058 2.20518 2.71577 3.22340 3.54276 3.66609 3.73976 3.84828 4.01131 4.09572 4.14529 4.21724 4.43203 4.44501 4.48666 4.50984 4.55213 4.62853 4.70529 4.72368 4.73881 4.78162 4.82967 4.83930 4.92791 4.96137 4.98224 5.04824 5.07558 5.09332 5.16263 5.20523 5.23025 5.28597 5.31849 5.32307 5.34786 5.36899 5.46944 5.50714 5.55448 5.68566 5.76845 5.84765 6.15513 6.23561 6.43027 6.72763 6.81444 7.12510 7.74728 8.27086 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003975 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.886115 B = 7042.864392 C = 8294.927598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.020 4.020 3 C -0.152 4.152 4 C -0.159 4.159 5 C 0.057 3.943 6 C -0.445 4.445 7 H 0.084 0.916 8 C 0.034 3.966 9 N -0.820 5.820 10 Si 0.983 3.017 11 H -0.259 1.259 12 H -0.267 1.267 13 H -0.261 1.261 14 C 0.146 3.854 15 N -0.463 5.463 16 C 0.053 3.947 17 C -0.105 4.105 18 C -0.084 4.084 19 H 0.062 0.938 20 C -0.065 4.065 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.115 4.115 26 C 0.066 3.934 27 N -0.496 5.496 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.290 0.710 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -14.244 4.737 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.161 4.161 3 C -0.172 4.172 4 C -0.186 4.186 5 C 0.051 3.949 6 C -0.474 4.474 7 H 0.102 0.898 8 C -0.182 4.182 9 N -0.446 5.446 10 Si 0.804 3.196 11 H -0.184 1.184 12 H -0.191 1.191 13 H -0.185 1.185 14 C -0.086 4.086 15 N -0.185 5.185 16 C -0.074 4.074 17 C -0.143 4.143 18 C -0.104 4.104 19 H 0.080 0.920 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.061 4.061 27 N -0.208 5.208 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.958 -14.683 4.627 15.676 hybrid contribution 0.309 1.564 -0.171 1.604 sum -2.649 -13.119 4.456 14.106 Atomic orbital electron populations 1.20299 0.88453 1.02063 1.01479 1.20824 0.96837 0.87927 1.10480 1.21718 0.94750 0.98432 1.02331 1.21655 0.93511 0.98188 1.05232 1.18478 0.95022 0.90850 0.90530 1.19622 0.91193 1.02308 1.34311 0.89814 1.26861 1.05769 0.93690 0.91873 1.69868 1.40809 1.11357 1.22543 0.85227 0.75859 0.78847 0.79681 1.18369 1.19122 1.18487 1.19754 0.86613 0.91195 1.11048 1.60954 1.53712 1.00716 1.03086 1.22940 0.98402 0.94054 0.91991 1.22687 1.01566 0.93798 0.96240 1.22264 0.99053 0.93878 0.95176 0.91950 1.21058 1.00098 0.93302 0.93888 1.21554 1.00491 0.93566 0.99113 1.21524 1.00965 0.97718 0.95172 1.21532 1.00316 0.97235 0.96387 1.21514 1.00924 0.94483 0.98454 1.21576 1.00346 0.98196 0.95148 1.22744 0.97475 0.92858 0.93046 1.66889 1.10926 1.30742 1.12219 0.92164 0.92475 0.90532 0.85822 0.86741 0.89888 0.95595 0.92062 0.89896 0.89409 0.91219 0.92439 0.91450 0.91917 0.91103 0.91132 0.92253 0.91991 0.91803 0.93343 0.92709 0.91549 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.24 0.72 -1.58 16 2 C -0.02 -0.95 6.79 42.64 0.29 -0.66 16 3 C -0.15 -7.23 9.69 22.32 0.22 -7.01 16 4 C -0.16 -8.52 8.80 22.89 0.20 -8.32 16 5 C 0.06 3.16 5.60 -21.06 -0.12 3.04 16 6 C -0.45 -24.13 8.70 23.36 0.20 -23.92 16 7 H 0.08 4.52 7.60 -2.91 -0.02 4.50 16 8 C 0.03 1.68 5.17 85.25 0.44 2.12 16 9 N -0.82 -42.39 10.98 21.83 0.24 -42.15 16 10 Si 0.98 38.15 29.59 68.60 2.03 40.18 16 11 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 14 C 0.15 7.55 5.19 134.05 0.70 8.25 16 15 N -0.46 -21.01 4.35 -690.10 -3.00 -24.01 16 16 C 0.05 2.13 6.63 86.77 0.58 2.70 16 17 C -0.11 -3.10 5.68 31.97 0.18 -2.92 16 18 C -0.08 -2.54 2.49 -9.61 -0.02 -2.56 16 19 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 20 C -0.06 -1.52 1.58 -10.79 -0.02 -1.54 16 21 C -0.11 -2.12 5.05 30.60 0.15 -1.96 16 22 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 23 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 24 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 25 C -0.12 -2.67 4.97 30.59 0.15 -2.52 16 26 C 0.07 2.55 5.27 86.65 0.46 3.01 16 27 N -0.50 -24.55 8.94 -179.56 -1.60 -26.16 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.11 6.25 6.26 -2.91 -0.02 6.23 16 33 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 34 H 0.03 1.13 7.42 -2.38 -0.02 1.11 16 35 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.08 2.26 8.02 -2.38 -0.02 2.24 16 37 H 0.09 2.20 8.12 -2.38 -0.02 2.18 16 38 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.24 7.48 -2.39 -0.02 1.22 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.05 1.27 7.05 -2.39 -0.02 1.26 16 48 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.07 2.49 7.47 -2.39 -0.02 2.47 16 50 H 0.03 1.24 7.15 -2.39 -0.02 1.22 16 Total: -1.00 -60.99 381.51 3.23 -57.76 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.89 Total: 33.61 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 4.67 Total: -39.23 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -4.37 Total: -92.32 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -60.99 3.23 -57.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167067888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.591 kcal (2) G-P(sol) polarization free energy of solvation -60.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds