Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31482 * 119.81994 * 2 1 4 4 C 1.32742 * 121.73583 * 180.02562 * 3 2 1 5 5 N 1.38368 * 119.43352 * 179.97438 * 4 3 2 6 6 C 1.47842 * 111.00027 * 239.15938 * 5 4 3 7 7 C 1.54905 * 104.79896 * 146.36035 * 6 5 4 8 8 C 1.55136 * 101.65323 * 322.92888 * 7 6 5 9 9 H 1.09005 * 110.70580 * 277.09589 * 8 7 6 10 10 C 1.52997 * 110.70754 * 154.03473 * 8 7 6 11 11 C 1.53003 * 109.47287 * 181.45390 * 10 8 7 12 12 C 1.53005 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.46985 * 59.99883 * 12 11 10 14 14 C 1.53003 * 109.47552 * 299.99813 * 13 12 11 15 15 C 1.53002 * 109.47065 * 61.45276 * 10 8 7 16 16 C 1.47446 * 110.99704 * 359.97438 * 5 4 3 17 17 C 1.39710 * 121.13658 * 0.25337 * 4 3 2 18 18 C 1.36558 * 119.49157 * 359.48722 * 17 4 3 19 19 C 1.40755 * 119.81544 * 180.02562 * 2 1 3 20 20 C 1.41202 * 120.56909 * 0.02562 * 19 2 1 21 21 H 1.07994 * 120.00495 * 24.87421 * 20 19 2 22 22 C 1.39875 * 119.99553 * 204.88030 * 20 19 2 23 23 N 1.30899 * 120.00418 * 14.67703 * 22 20 19 24 24 Si 1.86803 * 119.99939 * 194.67220 * 22 20 19 25 25 H 1.48498 * 109.46865 * 60.00175 * 24 22 20 26 26 H 1.48500 * 109.47162 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47011 * 300.00203 * 24 22 20 28 28 H 1.09003 * 109.46710 * 90.00278 * 1 2 3 29 29 H 1.09000 * 109.47170 * 209.99532 * 1 2 3 30 30 H 1.08995 * 109.47235 * 330.00071 * 1 2 3 31 31 H 1.09003 * 110.37713 * 27.52977 * 6 5 4 32 32 H 1.09007 * 110.37222 * 265.19166 * 6 5 4 33 33 H 1.09002 * 110.99090 * 204.83570 * 7 6 5 34 34 H 1.09000 * 110.98789 * 81.01955 * 7 6 5 35 35 H 1.09001 * 109.47522 * 301.45285 * 10 8 7 36 36 H 1.08999 * 109.46785 * 299.99815 * 11 10 8 37 37 H 1.08998 * 109.47065 * 59.99992 * 11 10 8 38 38 H 1.08995 * 109.46707 * 300.00231 * 12 11 10 39 39 H 1.09003 * 109.46915 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.47298 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47531 * 59.99986 * 13 12 11 42 42 H 1.08999 * 109.46843 * 300.00594 * 14 13 12 43 43 H 1.08998 * 109.47356 * 180.02562 * 14 13 12 44 44 H 1.08993 * 109.47237 * 299.99959 * 15 10 8 45 45 H 1.09004 * 109.47151 * 60.00390 * 15 10 8 46 46 H 1.09006 * 109.88526 * 117.33601 * 16 5 4 47 47 H 1.09002 * 110.02603 * 356.22678 * 16 5 4 48 48 H 1.08002 * 120.25182 * 179.72245 * 17 4 3 49 49 H 1.08004 * 120.79511 * 180.24451 * 18 17 4 50 50 H 0.96996 * 119.99930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1851 -0.0005 5 7 4.1268 2.4123 -0.0010 6 6 4.9987 2.5550 -1.1864 7 6 4.9349 4.0605 -1.5456 8 6 3.4523 4.3944 -1.2338 9 1 2.8111 4.1206 -2.0717 10 6 3.2917 5.8776 -0.8945 11 6 1.8279 6.1681 -0.5571 12 6 1.6672 7.6515 -0.2183 13 6 2.0912 8.4978 -1.4203 14 6 3.5550 8.2075 -1.7577 15 6 3.7159 6.7245 -2.0960 16 6 3.1501 3.5168 -0.0015 17 6 4.2495 0.0141 -0.0063 18 6 3.6199 -1.1977 -0.0010 19 6 2.2068 -1.2212 -0.0005 20 6 1.5090 -2.4488 -0.0016 21 1 0.5047 -2.4987 -0.3954 22 6 2.1187 -3.6001 0.5075 23 7 3.2004 -3.4997 1.2377 24 14 1.3890 -5.2813 0.1455 25 1 1.3675 -5.5058 -1.3222 26 1 2.2157 -6.3300 0.7952 27 1 0.0036 -5.3442 0.6763 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.6195 1.9517 -2.0113 32 1 6.0210 2.2660 -0.9425 33 1 5.1576 4.2200 -2.6006 34 1 5.6071 4.6413 -0.9140 35 1 3.9179 6.1241 -0.0370 36 1 1.2017 5.9217 -1.4145 37 1 1.5257 5.5647 0.2989 38 1 2.2935 7.8983 0.6388 39 1 0.6242 7.8584 0.0216 40 1 1.9763 9.5546 -1.1792 41 1 1.4649 8.2510 -2.2776 42 1 4.1813 8.4543 -0.9004 43 1 3.8572 8.8108 -2.6137 44 1 4.7587 6.5177 -2.3364 45 1 3.0896 6.4781 -2.9535 46 1 3.2571 4.1068 0.9088 47 1 2.1373 3.1195 -0.0688 48 1 5.3282 0.0669 -0.0112 49 1 4.1882 -2.1161 -0.0014 50 1 3.6229 -4.2981 1.5910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167069074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = 3.611640 kcal Electronic energy + Delta-G solvation = -26546.487497 eV Core-core repulsion = 23150.587625 eV Total energy + Delta-G solvation = -3395.899872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.89307 -38.63391 -37.06889 -34.13579 -32.88069 -31.24646 -30.96351 -30.56035 -28.83882 -27.74974 -26.72501 -24.53380 -22.86451 -22.63165 -21.55713 -20.69009 -19.91680 -19.72972 -19.56837 -17.26967 -16.33303 -15.97708 -15.42304 -14.75059 -14.46546 -14.40990 -14.18024 -13.93345 -13.60623 -13.34270 -12.95887 -12.91567 -12.55617 -12.47586 -12.35544 -12.22313 -11.90569 -11.72478 -11.55291 -11.40757 -11.22184 -11.18260 -11.11889 -11.08139 -10.91467 -10.89775 -10.65179 -10.54030 -10.50507 -10.28327 -9.88951 -9.79680 -9.72151 -9.38571 -8.48936 -8.22077 -7.96136 -7.01492 -6.75123 -4.37240 2.60639 2.95259 3.01994 3.04336 3.15290 3.86109 4.46628 4.58658 4.61728 4.67655 4.74316 4.98076 5.05479 5.08980 5.30055 5.39841 5.44547 5.48479 5.54093 5.59027 5.60897 5.63755 5.80125 5.82572 5.85980 5.91732 5.95984 6.04301 6.09443 6.12230 6.14191 6.23229 6.27049 6.31900 6.36102 6.38599 6.48302 6.50434 6.58531 6.64702 6.67633 6.76502 6.91203 6.97348 7.08951 7.34955 7.41477 7.52317 7.83517 8.03479 8.23595 8.50297 8.71353 8.80660 9.61728 10.10157 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002820 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.726262 B = 9927.264397 C =10587.866217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.017 3.983 3 N -0.491 5.491 4 C 0.166 3.834 5 N -0.461 5.461 6 C 0.049 3.951 7 C -0.123 4.123 8 C -0.101 4.101 9 H 0.070 0.930 10 C -0.071 4.071 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.041 3.959 17 C -0.151 4.151 18 C -0.116 4.116 19 C 0.056 3.944 20 C -0.446 4.446 21 H 0.083 0.917 22 C 0.072 3.928 23 N -0.795 5.795 24 Si 0.911 3.089 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.264 1.264 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.130 0.870 50 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 15.172 -5.010 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.125 4.125 3 N -0.204 5.204 4 C -0.065 4.065 5 N -0.181 5.181 6 C -0.078 4.078 7 C -0.161 4.161 8 C -0.120 4.120 9 H 0.089 0.911 10 C -0.090 4.090 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.157 4.157 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.086 4.086 17 C -0.173 4.173 18 C -0.142 4.142 19 C 0.052 3.948 20 C -0.476 4.476 21 H 0.101 0.899 22 C -0.145 4.145 23 N -0.420 5.420 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.189 1.189 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.147 0.853 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.936 15.816 -4.404 16.445 hybrid contribution -0.055 -1.725 -0.652 1.845 sum 0.881 14.091 -5.056 14.997 Atomic orbital electron populations 1.20238 0.91232 1.01102 1.00145 1.20789 0.94795 0.87807 1.09087 1.66483 1.08446 1.30673 1.14778 1.18968 0.88286 0.89249 1.10000 1.60825 1.19297 1.00920 1.37039 1.23065 0.97849 0.95460 0.91389 1.22767 0.96651 0.96033 1.00620 1.22401 0.96233 0.94522 0.98856 0.91120 1.21105 0.96513 0.93542 0.97821 1.21599 0.96342 0.95594 1.01784 1.21535 1.00826 0.95461 0.97839 1.21534 0.96540 0.99111 0.98482 1.21522 0.96594 0.96555 1.00962 1.21587 1.01176 0.94278 0.98086 1.22855 0.98791 0.90828 0.96146 1.20830 0.98388 0.92588 1.05522 1.21379 0.94849 0.96494 1.01527 1.18269 0.92348 0.93077 0.91142 1.19452 1.01348 0.91960 1.34835 0.89936 1.25960 0.94405 1.01554 0.92628 1.69805 1.17154 1.31805 1.23268 0.86306 0.79893 0.80377 0.79844 1.18812 1.20305 1.18873 0.93539 0.91458 0.93421 0.93604 0.90869 0.91520 0.91012 0.91196 0.92147 0.91457 0.92162 0.92296 0.92532 0.92201 0.92173 0.92458 0.91992 0.92243 0.91929 0.88453 0.88338 0.85269 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 2 C 0.02 0.41 6.86 -81.79 -0.56 -0.15 16 3 N -0.49 -11.89 7.80 -8.05 -0.06 -11.95 16 4 C 0.17 3.87 6.16 -155.13 -0.96 2.92 16 5 N -0.46 -9.15 5.18 -169.93 -0.88 -10.04 16 6 C 0.05 0.82 6.04 -2.30 -0.01 0.81 16 7 C -0.12 -1.63 5.44 -24.60 -0.13 -1.76 16 8 C -0.10 -1.40 2.49 -88.82 -0.22 -1.62 16 9 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 10 C -0.07 -0.81 1.58 -90.62 -0.14 -0.95 16 11 C -0.12 -1.30 5.04 -26.73 -0.13 -1.43 16 12 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 13 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 14 C -0.12 -1.04 5.92 -26.75 -0.16 -1.20 16 15 C -0.11 -1.12 4.99 -26.75 -0.13 -1.26 16 16 C 0.04 0.73 5.44 -2.86 -0.02 0.71 16 17 C -0.15 -3.61 9.28 -39.64 -0.37 -3.98 16 18 C -0.12 -3.00 8.73 -39.01 -0.34 -3.34 16 19 C 0.06 1.47 5.59 -106.65 -0.60 0.88 16 20 C -0.45 -11.34 8.16 -37.84 -0.31 -11.64 16 21 H 0.08 1.99 6.84 -52.49 -0.36 1.63 16 22 C 0.07 1.75 5.22 -17.34 -0.09 1.66 16 23 N -0.79 -20.03 10.83 55.54 0.60 -19.43 16 24 Si 0.91 18.10 29.58 -169.99 -5.03 13.07 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.39 6.76 -51.93 -0.35 1.04 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.83 7.78 -51.93 -0.40 0.42 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.60 7.29 -51.93 -0.38 0.22 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 47 H 0.10 1.95 5.89 -51.93 -0.31 1.64 16 48 H 0.10 2.15 7.95 -52.49 -0.42 1.74 16 49 H 0.13 3.39 6.17 -52.48 -0.32 3.06 16 50 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -27.01 377.10 -12.62 -39.63 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.79 Total: 7.00 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -4.15 Total: -23.97 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.34 Total: -41.42 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.01 -12.62 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167069074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.241 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds