Wall clock time and date at job start Tue Mar 31 2020 11:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31482 * 119.81994 * 2 1 4 4 C 1.32742 * 121.73583 * 180.02562 * 3 2 1 5 5 N 1.38368 * 119.43352 * 179.97438 * 4 3 2 6 6 C 1.47842 * 111.00027 * 239.15938 * 5 4 3 7 7 C 1.54905 * 104.79896 * 146.36035 * 6 5 4 8 8 C 1.55136 * 101.65323 * 322.92888 * 7 6 5 9 9 H 1.09005 * 110.70580 * 277.09589 * 8 7 6 10 10 C 1.52997 * 110.70754 * 154.03473 * 8 7 6 11 11 C 1.53003 * 109.47287 * 181.45390 * 10 8 7 12 12 C 1.53005 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.46985 * 59.99883 * 12 11 10 14 14 C 1.53003 * 109.47552 * 299.99813 * 13 12 11 15 15 C 1.53002 * 109.47065 * 61.45276 * 10 8 7 16 16 C 1.47446 * 110.99704 * 359.97438 * 5 4 3 17 17 C 1.39710 * 121.13658 * 0.25337 * 4 3 2 18 18 C 1.36558 * 119.49157 * 359.48722 * 17 4 3 19 19 C 1.40755 * 119.81544 * 180.02562 * 2 1 3 20 20 C 1.41202 * 120.56909 * 0.02562 * 19 2 1 21 21 H 1.07994 * 120.00495 * 24.87421 * 20 19 2 22 22 C 1.39875 * 119.99553 * 204.88030 * 20 19 2 23 23 N 1.30899 * 120.00418 * 14.67703 * 22 20 19 24 24 Si 1.86803 * 119.99939 * 194.67220 * 22 20 19 25 25 H 1.48498 * 109.46865 * 60.00175 * 24 22 20 26 26 H 1.48500 * 109.47162 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47011 * 300.00203 * 24 22 20 28 28 H 1.09003 * 109.46710 * 90.00278 * 1 2 3 29 29 H 1.09000 * 109.47170 * 209.99532 * 1 2 3 30 30 H 1.08995 * 109.47235 * 330.00071 * 1 2 3 31 31 H 1.09003 * 110.37713 * 27.52977 * 6 5 4 32 32 H 1.09007 * 110.37222 * 265.19166 * 6 5 4 33 33 H 1.09002 * 110.99090 * 204.83570 * 7 6 5 34 34 H 1.09000 * 110.98789 * 81.01955 * 7 6 5 35 35 H 1.09001 * 109.47522 * 301.45285 * 10 8 7 36 36 H 1.08999 * 109.46785 * 299.99815 * 11 10 8 37 37 H 1.08998 * 109.47065 * 59.99992 * 11 10 8 38 38 H 1.08995 * 109.46707 * 300.00231 * 12 11 10 39 39 H 1.09003 * 109.46915 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.47298 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47531 * 59.99986 * 13 12 11 42 42 H 1.08999 * 109.46843 * 300.00594 * 14 13 12 43 43 H 1.08998 * 109.47356 * 180.02562 * 14 13 12 44 44 H 1.08993 * 109.47237 * 299.99959 * 15 10 8 45 45 H 1.09004 * 109.47151 * 60.00390 * 15 10 8 46 46 H 1.09006 * 109.88526 * 117.33601 * 16 5 4 47 47 H 1.09002 * 110.02603 * 356.22678 * 16 5 4 48 48 H 1.08002 * 120.25182 * 179.72245 * 17 4 3 49 49 H 1.08004 * 120.79511 * 180.24451 * 18 17 4 50 50 H 0.96996 * 119.99930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1851 -0.0005 5 7 4.1268 2.4123 -0.0010 6 6 4.9987 2.5550 -1.1864 7 6 4.9349 4.0605 -1.5456 8 6 3.4523 4.3944 -1.2338 9 1 2.8111 4.1206 -2.0717 10 6 3.2917 5.8776 -0.8945 11 6 1.8279 6.1681 -0.5571 12 6 1.6672 7.6515 -0.2183 13 6 2.0912 8.4978 -1.4203 14 6 3.5550 8.2075 -1.7577 15 6 3.7159 6.7245 -2.0960 16 6 3.1501 3.5168 -0.0015 17 6 4.2495 0.0141 -0.0063 18 6 3.6199 -1.1977 -0.0010 19 6 2.2068 -1.2212 -0.0005 20 6 1.5090 -2.4488 -0.0016 21 1 0.5047 -2.4987 -0.3954 22 6 2.1187 -3.6001 0.5075 23 7 3.2004 -3.4997 1.2377 24 14 1.3890 -5.2813 0.1455 25 1 1.3675 -5.5058 -1.3222 26 1 2.2157 -6.3300 0.7952 27 1 0.0036 -5.3442 0.6763 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.6195 1.9517 -2.0113 32 1 6.0210 2.2660 -0.9425 33 1 5.1576 4.2200 -2.6006 34 1 5.6071 4.6413 -0.9140 35 1 3.9179 6.1241 -0.0370 36 1 1.2017 5.9217 -1.4145 37 1 1.5257 5.5647 0.2989 38 1 2.2935 7.8983 0.6388 39 1 0.6242 7.8584 0.0216 40 1 1.9763 9.5546 -1.1792 41 1 1.4649 8.2510 -2.2776 42 1 4.1813 8.4543 -0.9004 43 1 3.8572 8.8108 -2.6137 44 1 4.7587 6.5177 -2.3364 45 1 3.0896 6.4781 -2.9535 46 1 3.2571 4.1068 0.9088 47 1 2.1373 3.1195 -0.0688 48 1 5.3282 0.0669 -0.0112 49 1 4.1882 -2.1161 -0.0014 50 1 3.6229 -4.2981 1.5910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167069074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:19 Heat of formation + Delta-G solvation = -7.370211 kcal Electronic energy + Delta-G solvation = -26546.963706 eV Core-core repulsion = 23150.587625 eV Total energy + Delta-G solvation = -3396.376081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35212 -39.96922 -38.40366 -35.87978 -34.30902 -32.98510 -32.19908 -31.67024 -30.26680 -29.11396 -28.40330 -26.23258 -24.11214 -23.64090 -22.89606 -22.29511 -21.42221 -20.81818 -20.61319 -19.15574 -17.95445 -17.38229 -16.82420 -16.33134 -15.73148 -15.61422 -15.31584 -15.02337 -14.96685 -14.76976 -14.45287 -14.17137 -13.94861 -13.90905 -13.62174 -13.42726 -13.35896 -13.20505 -13.06527 -12.94158 -12.76918 -12.63424 -12.47347 -12.18254 -12.07160 -12.00617 -11.95800 -11.77793 -11.63243 -11.47844 -11.26046 -11.19100 -10.76432 -10.72401 -10.22580 -10.11492 -9.82292 -8.83413 -8.56603 -6.28840 0.75998 1.04493 1.39506 1.50264 1.53237 2.19604 2.68840 3.11982 3.58440 3.63549 3.69491 3.78481 3.98714 4.07185 4.13936 4.19104 4.39026 4.47645 4.48491 4.54172 4.55370 4.64109 4.70553 4.71732 4.72789 4.76100 4.80943 4.84320 4.88524 4.95999 5.00420 5.01927 5.06776 5.12683 5.14241 5.21458 5.26342 5.28824 5.29775 5.31922 5.36623 5.46403 5.48731 5.49902 5.55481 5.60332 5.68336 5.81920 5.96350 6.22559 6.38492 6.63881 6.82165 6.92645 7.72176 8.30107 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002820 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.726262 B = 9927.264397 C =10587.866217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.001 4.001 3 N -0.499 5.499 4 C 0.168 3.832 5 N -0.472 5.472 6 C 0.046 3.954 7 C -0.109 4.109 8 C -0.091 4.091 9 H 0.059 0.941 10 C -0.063 4.063 11 C -0.116 4.116 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.110 4.110 16 C 0.042 3.958 17 C -0.161 4.161 18 C -0.135 4.135 19 C 0.025 3.975 20 C -0.472 4.472 21 H 0.089 0.911 22 C 0.032 3.968 23 N -0.828 5.828 24 Si 0.985 3.015 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.257 1.257 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 16.659 -5.861 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 N -0.213 5.213 4 C -0.063 4.063 5 N -0.192 5.192 6 C -0.080 4.080 7 C -0.146 4.146 8 C -0.110 4.110 9 H 0.077 0.923 10 C -0.082 4.082 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.085 4.085 17 C -0.183 4.183 18 C -0.161 4.161 19 C 0.020 3.980 20 C -0.502 4.502 21 H 0.107 0.893 22 C -0.183 4.183 23 N -0.454 5.454 24 Si 0.806 3.194 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.181 1.181 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.132 0.868 49 H 0.135 0.865 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.116 17.333 -5.259 18.147 hybrid contribution -0.059 -2.088 -0.348 2.117 sum 1.057 15.245 -5.606 16.277 Atomic orbital electron populations 1.20217 0.88938 1.01562 1.01228 1.21381 0.96634 0.87661 1.08548 1.66672 1.08897 1.30399 1.15292 1.19358 0.88258 0.90564 1.08164 1.60797 1.19674 1.00043 1.38686 1.23156 0.97397 0.97907 0.89589 1.22749 0.96176 0.93291 1.02430 1.22303 0.96582 0.95580 0.96546 0.92253 1.21033 0.96588 0.91852 0.98711 1.21579 0.96211 0.96762 1.00794 1.21516 1.01246 0.94186 0.98465 1.21536 0.96569 0.99616 0.97842 1.21516 0.96566 0.95687 1.01643 1.21559 1.01502 0.94804 0.96926 1.22837 0.96838 0.90643 0.98170 1.21008 0.99276 0.92413 1.05592 1.21392 0.95141 0.96730 1.02848 1.18631 0.92823 0.94218 0.92330 1.19705 1.01951 0.92585 1.35917 0.89335 1.26836 0.94603 1.05123 0.91749 1.69870 1.18413 1.33177 1.23955 0.85193 0.79259 0.75309 0.79660 1.18413 1.19529 1.18066 0.92031 0.91479 0.92322 0.95343 0.89753 0.89099 0.89422 0.91137 0.92764 0.93219 0.91959 0.91930 0.91246 0.92347 0.91867 0.91163 0.91167 0.92516 0.91664 0.91092 0.86800 0.86464 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.62 9.58 71.24 0.68 -1.93 16 2 C 0.00 -0.07 6.86 43.23 0.30 0.23 16 3 N -0.50 -24.77 7.80 -179.37 -1.40 -26.17 16 4 C 0.17 8.00 6.16 133.32 0.82 8.82 16 5 N -0.47 -18.73 5.18 -691.55 -3.58 -22.32 16 6 C 0.05 1.49 6.04 86.77 0.52 2.01 16 7 C -0.11 -2.63 5.44 31.98 0.17 -2.45 16 8 C -0.09 -2.42 2.49 -9.63 -0.02 -2.44 16 9 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 10 C -0.06 -1.33 1.58 -10.79 -0.02 -1.34 16 11 C -0.12 -2.50 5.04 30.60 0.15 -2.35 16 12 C -0.12 -2.03 5.92 30.59 0.18 -1.85 16 13 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 14 C -0.12 -1.68 5.92 30.58 0.18 -1.50 16 15 C -0.11 -1.88 4.99 30.58 0.15 -1.73 16 16 C 0.04 1.49 5.44 86.63 0.47 1.96 16 17 C -0.16 -7.91 9.28 22.23 0.21 -7.70 16 18 C -0.13 -7.23 8.73 22.64 0.20 -7.03 16 19 C 0.02 1.33 5.59 -21.18 -0.12 1.21 16 20 C -0.47 -24.53 8.16 23.39 0.19 -24.34 16 21 H 0.09 4.33 6.84 -2.91 -0.02 4.31 16 22 C 0.03 1.55 5.22 85.23 0.45 1.99 16 23 N -0.83 -42.73 10.83 21.82 0.24 -42.49 16 24 Si 0.99 37.08 29.58 68.60 2.03 39.11 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 27 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.80 6.76 -2.39 -0.02 2.78 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.03 1.02 7.78 -2.39 -0.02 1.00 16 32 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 35 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.10 7.29 -2.39 -0.02 1.08 16 45 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.07 2.22 7.71 -2.38 -0.02 2.21 16 47 H 0.07 2.90 5.89 -2.39 -0.01 2.89 16 48 H 0.11 5.08 7.95 -2.91 -0.02 5.05 16 49 H 0.12 6.45 6.17 -2.91 -0.02 6.43 16 50 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -59.77 377.10 2.88 -56.90 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.90 Total: 34.99 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.70 Total: -40.02 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.75 Total: -90.97 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -59.77 2.88 -56.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167069074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.527 kcal (2) G-P(sol) polarization free energy of solvation -59.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds