Wall clock time and date at job start Tue Mar 31 2020 11:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31484 * 119.81319 * 2 1 4 4 C 1.32744 * 121.72932 * 180.02562 * 3 2 1 5 5 N 1.38375 * 119.42979 * 179.97438 * 4 3 2 6 6 C 1.48531 * 110.99511 * 117.39894 * 5 4 3 7 7 C 1.54937 * 103.22277 * 200.27829 * 6 5 4 8 8 C 1.54596 * 102.92482 * 37.41418 * 7 6 5 9 9 H 1.08998 * 110.38981 * 96.99988 * 8 7 6 10 10 C 1.53002 * 110.31123 * 219.12798 * 8 7 6 11 11 C 1.52998 * 109.46927 * 175.71386 * 10 8 7 12 12 C 1.53002 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47088 * 299.99873 * 12 11 10 14 14 C 1.53006 * 109.47018 * 60.00039 * 13 12 11 15 15 C 1.52998 * 109.46755 * 295.71442 * 10 8 7 16 16 C 1.47896 * 111.00092 * 359.97438 * 5 4 3 17 17 C 1.39710 * 121.14075 * 0.25725 * 4 3 2 18 18 C 1.36562 * 119.49121 * 359.48541 * 17 4 3 19 19 C 1.40758 * 119.81759 * 180.02562 * 2 1 3 20 20 C 1.41196 * 120.56528 * 359.97438 * 19 2 1 21 21 H 1.08003 * 120.00598 * 24.88197 * 20 19 2 22 22 C 1.39878 * 119.99902 * 204.87715 * 20 19 2 23 23 N 1.30899 * 119.99789 * 14.68952 * 22 20 19 24 24 Si 1.86798 * 120.00134 * 194.69318 * 22 20 19 25 25 H 1.48496 * 109.47055 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47019 * 120.00153 * 24 22 20 27 27 H 1.48504 * 109.46984 * 239.99700 * 24 22 20 28 28 H 1.09001 * 109.47248 * 90.00498 * 1 2 3 29 29 H 1.08998 * 109.47121 * 209.99791 * 1 2 3 30 30 H 1.08993 * 109.47104 * 329.99918 * 1 2 3 31 31 H 1.08994 * 110.66838 * 318.70862 * 6 5 4 32 32 H 1.08998 * 110.67059 * 81.84896 * 6 5 4 33 33 H 1.09000 * 110.72652 * 279.05441 * 7 6 5 34 34 H 1.09003 * 110.72983 * 155.77486 * 7 6 5 35 35 H 1.08999 * 109.46801 * 55.71278 * 10 8 7 36 36 H 1.09003 * 109.47134 * 299.99794 * 11 10 8 37 37 H 1.09000 * 109.47024 * 60.00002 * 11 10 8 38 38 H 1.09000 * 109.47267 * 60.00151 * 12 11 10 39 39 H 1.09000 * 109.46950 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47293 * 300.00261 * 13 12 11 41 41 H 1.08999 * 109.47129 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47018 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.46907 * 59.99985 * 14 13 12 44 44 H 1.08999 * 109.47332 * 299.99511 * 15 10 8 45 45 H 1.09000 * 109.47451 * 60.00233 * 15 10 8 46 46 H 1.09000 * 109.91628 * 26.49158 * 16 5 4 47 47 H 1.08995 * 110.08539 * 265.29385 * 16 5 4 48 48 H 1.07999 * 120.25784 * 179.71625 * 17 4 3 49 49 H 1.08000 * 120.79778 * 180.24540 * 18 17 4 50 50 H 0.96997 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1267 2.4125 -0.0010 6 6 4.9389 2.5899 1.2298 7 6 5.1243 4.1259 1.3136 8 6 3.7606 4.6660 0.8252 9 1 3.1206 4.9050 1.6745 10 6 3.9627 5.9036 -0.0513 11 6 2.6130 6.3584 -0.6104 12 6 2.8150 7.5965 -1.4864 13 6 3.4245 8.7212 -0.6471 14 6 4.7742 8.2663 -0.0880 15 6 4.5725 7.0285 0.7875 16 6 3.1469 3.5204 -0.0015 17 6 4.2495 0.0143 -0.0064 18 6 3.6200 -1.1976 -0.0011 19 6 2.2069 -1.2212 -0.0005 20 6 1.5091 -2.4487 -0.0006 21 1 0.5044 -2.4989 -0.3937 22 6 2.1191 -3.5999 0.5086 23 7 3.2013 -3.4991 1.2380 24 14 1.3894 -5.2812 0.1474 25 1 0.1750 -5.1236 -0.6925 26 1 2.3879 -6.1092 -0.5756 27 1 1.0251 -5.9472 1.4237 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.4012 2.2192 2.1024 32 1 5.9029 2.0910 1.1299 33 1 5.9277 4.4540 0.6541 34 1 5.3164 4.4358 2.3409 35 1 4.6337 5.6599 -0.8750 36 1 2.1786 5.5570 -1.2079 37 1 1.9421 6.6022 0.2134 38 1 3.4861 7.3532 -2.3101 39 1 1.8536 7.9202 -1.8850 40 1 2.7534 8.9645 0.1766 41 1 3.5680 9.6033 -1.2711 42 1 5.2082 9.0674 0.5103 43 1 5.4453 8.0230 -0.9117 44 1 3.9015 7.2723 1.6112 45 1 5.5340 6.7045 1.1858 46 1 2.2139 3.1911 0.4557 47 1 2.9619 3.8560 -1.0219 48 1 5.3282 0.0670 -0.0114 49 1 4.1883 -2.1160 -0.0016 50 1 3.6245 -4.2975 1.5908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167069075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:22 Heat of formation + Delta-G solvation = -7.715652 kcal Electronic energy + Delta-G solvation = -26489.711780 eV Core-core repulsion = 23093.320719 eV Total energy + Delta-G solvation = -3396.391061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31891 -40.00652 -38.36872 -35.90340 -34.32472 -32.99228 -32.17778 -31.69212 -30.28536 -29.05589 -28.41088 -26.25192 -24.19310 -23.55763 -22.89725 -22.32973 -21.53866 -20.65005 -20.56395 -19.17611 -17.96473 -17.34878 -16.88754 -16.39314 -15.71332 -15.56862 -15.22575 -15.13718 -14.98201 -14.78598 -14.48368 -14.21526 -13.97224 -13.75420 -13.65987 -13.44434 -13.34444 -13.20607 -13.08396 -12.88171 -12.67392 -12.64425 -12.43024 -12.20618 -12.05675 -12.00981 -11.94196 -11.85846 -11.62990 -11.46045 -11.22687 -11.19097 -10.74047 -10.72259 -10.35025 -10.09169 -9.79591 -8.88499 -8.62091 -6.30360 0.73877 1.03924 1.39504 1.48816 1.54615 2.19085 2.66318 3.14841 3.59400 3.66951 3.70884 3.75428 3.97950 4.04991 4.16701 4.22961 4.38983 4.47384 4.49661 4.53755 4.56146 4.63805 4.71409 4.71769 4.73030 4.75721 4.79948 4.85336 4.88419 4.96173 5.01287 5.02877 5.04898 5.12669 5.14723 5.18327 5.26285 5.26958 5.30818 5.32724 5.37684 5.47061 5.47358 5.49411 5.57064 5.57900 5.67712 5.79092 5.93529 6.17216 6.36707 6.62804 6.80830 6.91500 7.71317 8.28669 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.030778 B = 0.002748 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.526498 B =10187.678852 C =10823.291867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.004 4.004 3 N -0.499 5.499 4 C 0.159 3.841 5 N -0.457 5.457 6 C 0.039 3.961 7 C -0.103 4.103 8 C -0.086 4.086 9 H 0.072 0.928 10 C -0.065 4.065 11 C -0.117 4.117 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.110 4.110 16 C 0.050 3.950 17 C -0.156 4.156 18 C -0.136 4.136 19 C 0.026 3.974 20 C -0.469 4.469 21 H 0.088 0.912 22 C 0.032 3.968 23 N -0.827 5.827 24 Si 0.985 3.015 25 H -0.254 1.254 26 H -0.266 1.266 27 H -0.267 1.267 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 16.841 -0.128 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.145 4.145 3 N -0.212 5.212 4 C -0.072 4.072 5 N -0.178 5.178 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.105 4.105 9 H 0.090 0.910 10 C -0.084 4.084 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.078 4.078 17 C -0.178 4.178 18 C -0.163 4.163 19 C 0.022 3.978 20 C -0.499 4.499 21 H 0.106 0.894 22 C -0.183 4.183 23 N -0.453 5.453 24 Si 0.806 3.194 25 H -0.178 1.178 26 H -0.191 1.191 27 H -0.192 1.192 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.724 17.510 -0.451 17.727 hybrid contribution -0.174 -2.098 0.506 2.165 sum 2.549 15.412 0.055 15.622 Atomic orbital electron populations 1.20212 0.88977 1.01536 1.01213 1.21422 0.96664 0.87595 1.08788 1.66778 1.09019 1.30665 1.14780 1.19417 0.88219 0.90752 1.08816 1.62091 1.20628 0.99706 1.35334 1.23323 0.97532 0.98459 0.89455 1.22543 0.97367 0.91754 1.02399 1.22052 0.96565 0.94256 0.97612 0.90964 1.21088 0.96873 0.93267 0.97160 1.21624 0.96966 0.97510 0.99363 1.21517 1.00835 0.95116 0.98035 1.21530 0.96846 0.97617 0.99461 1.21521 0.97207 0.97405 0.99376 1.21554 1.00919 0.94378 0.97869 1.22774 0.94766 0.89806 1.00418 1.21014 0.99315 0.92375 1.05100 1.21389 0.95122 0.96744 1.03000 1.18655 0.92865 0.94230 0.92094 1.19763 1.01942 0.92516 1.35679 0.89353 1.26836 0.94600 1.05126 0.91759 1.69871 1.18308 1.33098 1.23989 0.85095 0.79384 0.75770 0.79148 1.17757 1.19123 1.19164 0.92142 0.91374 0.92371 0.95840 0.89880 0.89577 0.89183 0.91807 0.93285 0.92156 0.92405 0.91871 0.92013 0.91386 0.91085 0.92236 0.91998 0.91288 0.93517 0.91553 0.86747 0.86402 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.63 9.58 71.24 0.68 -1.95 16 2 C 0.00 -0.18 6.86 43.23 0.30 0.11 16 3 N -0.50 -24.97 8.00 -179.36 -1.43 -26.40 16 4 C 0.16 7.62 6.20 133.31 0.83 8.44 16 5 N -0.46 -18.17 5.27 -689.06 -3.63 -21.80 16 6 C 0.04 1.30 6.03 86.65 0.52 1.82 16 7 C -0.10 -2.51 5.64 31.80 0.18 -2.33 16 8 C -0.09 -2.22 2.57 -9.90 -0.03 -2.25 16 9 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 10 C -0.07 -1.39 1.50 -10.79 -0.02 -1.40 16 11 C -0.12 -2.50 4.95 30.59 0.15 -2.34 16 12 C -0.12 -2.08 5.92 30.59 0.18 -1.89 16 13 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 14 C -0.12 -1.72 5.92 30.58 0.18 -1.54 16 15 C -0.11 -1.84 5.02 30.58 0.15 -1.68 16 16 C 0.05 1.76 5.51 86.46 0.48 2.24 16 17 C -0.16 -7.68 9.37 22.23 0.21 -7.47 16 18 C -0.14 -7.30 8.73 22.64 0.20 -7.11 16 19 C 0.03 1.42 5.59 -21.18 -0.12 1.30 16 20 C -0.47 -24.39 8.16 23.39 0.19 -24.20 16 21 H 0.09 4.35 6.84 -2.91 -0.02 4.33 16 22 C 0.03 1.54 5.22 85.23 0.45 1.98 16 23 N -0.83 -42.22 10.83 21.82 0.24 -41.98 16 24 Si 0.99 36.99 29.58 68.60 2.03 39.02 16 25 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 26 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 27 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.84 6.75 -2.39 -0.02 2.83 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.02 0.87 7.99 -2.39 -0.02 0.85 16 32 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 33 H 0.09 1.91 7.78 -2.39 -0.02 1.89 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.05 1.22 6.45 -2.39 -0.02 1.20 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.08 7.35 -2.39 -0.02 1.06 16 46 H 0.05 1.91 6.47 -2.39 -0.02 1.89 16 47 H 0.07 2.37 6.27 -2.39 -0.01 2.36 16 48 H 0.11 5.09 8.02 -2.91 -0.02 5.07 16 49 H 0.12 6.47 6.17 -2.91 -0.02 6.45 16 50 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -59.70 376.05 2.81 -56.89 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.90 Total: 34.08 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.71 Total: -39.81 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.83 Total: -90.19 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -59.70 2.81 -56.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167069075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.176 kcal (2) G-P(sol) polarization free energy of solvation -59.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds