Wall clock time and date at job start Tue Mar 31 2020 10:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99642 * 2 1 4 4 C 1.52998 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46996 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.42893 * 113.99943 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46993 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00332 * 0.28142 * 8 7 6 10 10 N 1.34778 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99971 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47081 * 175.02103 * 12 11 10 14 14 C 1.53002 * 115.54988 * 278.03010 * 13 12 11 15 15 N 1.46503 * 109.47093 * 303.89866 * 14 13 12 16 16 C 1.36936 * 119.99878 * 175.59100 * 15 14 13 17 17 H 1.08003 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99556 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47300 * 119.99722 * 20 18 16 23 23 H 1.48498 * 109.47151 * 239.99914 * 20 18 16 24 24 C 1.53002 * 117.49930 * 132.32289 * 13 12 11 25 25 C 1.52996 * 117.50135 * 63.70068 * 13 12 11 26 26 H 1.08994 * 109.47034 * 299.99714 * 1 2 3 27 27 H 1.09000 * 109.46952 * 60.00014 * 1 2 3 28 28 H 1.09003 * 109.46381 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47372 * 59.99722 * 3 2 1 30 30 H 1.09004 * 109.47252 * 299.99781 * 3 2 1 31 31 H 1.09003 * 109.47359 * 60.00619 * 4 3 2 32 32 H 1.09003 * 109.47485 * 299.99762 * 4 3 2 33 33 H 1.09001 * 109.46943 * 60.00436 * 5 4 3 34 34 H 1.09003 * 109.46878 * 300.00218 * 5 4 3 35 35 H 1.09003 * 109.46906 * 60.00853 * 7 6 5 36 36 H 1.08990 * 109.47654 * 300.00216 * 7 6 5 37 37 H 0.96997 * 119.99715 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46565 * 299.99242 * 11 10 8 39 39 H 1.08995 * 109.47366 * 59.99575 * 11 10 8 40 40 H 1.09002 * 109.47289 * 295.02052 * 12 11 10 41 41 H 1.08997 * 109.47472 * 55.02059 * 12 11 10 42 42 H 1.08994 * 109.46881 * 63.89829 * 14 13 12 43 43 H 1.09002 * 109.46821 * 183.90185 * 14 13 12 44 44 H 0.97005 * 119.99882 * 355.59554 * 15 14 13 45 45 H 0.97004 * 119.99496 * 180.02562 * 19 18 16 46 46 H 1.09005 * 117.49730 * 0.02562 * 24 13 12 47 47 H 1.08999 * 117.50027 * 145.01652 * 24 13 12 48 48 H 1.09000 * 117.50494 * 214.98016 * 25 13 12 49 49 H 1.09006 * 117.49881 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0000 6 8 5.5822 2.4698 0.0012 7 6 6.2646 3.7253 0.0001 8 6 7.7528 3.4881 0.0009 9 8 8.1864 2.3555 -0.0029 10 7 8.6020 4.5347 0.0006 11 6 10.0488 4.3042 0.0008 12 6 10.7794 5.6484 -0.0002 13 6 12.2855 5.4103 0.1252 14 6 12.8003 5.1750 1.5467 15 7 12.4157 6.3033 2.3984 16 6 12.6899 6.2732 3.7397 17 1 13.1900 5.4179 4.1696 18 6 12.3250 7.3420 4.5468 19 7 11.7159 8.3845 4.0227 20 14 12.6996 7.3014 6.3763 21 1 13.3854 6.0279 6.7130 22 1 13.5789 8.4454 6.7271 23 1 11.4318 7.3981 7.1435 24 6 13.2023 6.1598 -0.8436 25 6 12.9785 4.6556 -1.0110 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8575 0.6438 -0.8892 32 1 3.8568 0.6440 0.8909 33 1 3.8357 3.1240 0.8896 34 1 3.8363 3.1229 -0.8905 35 1 5.9860 4.2909 0.8893 36 1 5.9873 4.2888 -0.8906 37 1 8.2552 5.4406 -0.0004 38 1 10.3265 3.7399 0.8911 39 1 10.3268 3.7392 -0.8889 40 1 10.5711 6.1745 -0.9318 41 1 10.4354 6.2497 0.8413 42 1 12.3670 4.2566 1.9426 43 1 13.8866 5.0864 1.5296 44 1 11.9668 7.0716 2.0121 45 1 11.4613 9.1316 4.5867 46 1 12.7325 6.8229 -1.5701 47 1 14.1725 6.4857 -0.4684 48 1 13.8014 3.9917 -0.7461 49 1 12.3614 4.3291 -1.8482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167670245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:21 Heat of formation + Delta-G solvation = -102.100827 kcal Electronic energy + Delta-G solvation = -25359.299046 eV Core-core repulsion = 21515.673122 eV Total energy + Delta-G solvation = -3843.625923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.80934 -38.61178 -38.28283 -37.61512 -34.76302 -33.93943 -33.18021 -30.82398 -30.43059 -28.21205 -27.08999 -25.91941 -24.96025 -23.24295 -22.71943 -22.04601 -21.79287 -20.62552 -18.55181 -17.45200 -17.10224 -17.01925 -16.95205 -16.57196 -16.25091 -15.66764 -15.40310 -15.12556 -14.92264 -14.45471 -14.43675 -14.14070 -13.80411 -13.28728 -13.10829 -12.94993 -12.72328 -12.49599 -12.30370 -12.22784 -11.87600 -11.84141 -11.47978 -11.39223 -11.36887 -11.12582 -10.93797 -10.85448 -10.58427 -10.12758 -10.12333 -9.99480 -9.92228 -9.78687 -9.62386 -9.32820 -8.98346 -8.84450 -6.90309 -5.77072 -3.04462 2.60005 2.63991 3.28006 3.43195 3.49520 3.51330 3.94978 4.07012 4.50075 4.60636 4.62031 4.68225 4.79560 4.84643 4.88979 4.91603 4.94690 5.01690 5.03217 5.04420 5.09949 5.13808 5.16295 5.24599 5.33687 5.53953 5.60248 5.69428 5.70742 5.77307 5.78465 5.91501 6.16430 6.19454 6.21395 6.43201 6.45385 6.46213 6.59879 6.68248 6.77540 6.78657 6.84173 7.51713 7.71491 8.24704 8.42399 9.54141 10.12201 10.47925 11.45955 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002079 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.877114 B =13467.936057 C =15170.669886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.065 3.935 6 O -0.361 6.361 7 C 0.045 3.955 8 C 0.511 3.489 9 O -0.522 6.522 10 N -0.725 5.725 11 C 0.128 3.872 12 C -0.092 4.092 13 C -0.119 4.119 14 C 0.187 3.813 15 N -0.727 5.727 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.166 4.166 25 C -0.177 4.177 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.253 0.747 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 -8.318 -13.605 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.158 4.158 5 C -0.012 4.012 6 O -0.279 6.279 7 C -0.035 4.035 8 C 0.296 3.704 9 O -0.397 6.397 10 N -0.379 5.379 11 C 0.005 3.995 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.203 4.203 25 C -0.215 4.215 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.780 -9.575 -13.435 24.256 hybrid contribution -0.479 1.385 0.941 1.741 sum -18.259 -8.190 -12.495 23.592 Atomic orbital electron populations 1.22760 0.80750 1.02948 1.00039 1.87885 1.19889 1.27747 1.95435 1.22361 0.93444 0.84916 1.00418 1.21352 0.92500 0.96711 1.05187 1.22363 0.81045 0.97259 1.00550 1.88001 1.17453 1.26965 1.95453 1.22214 0.91020 0.87567 1.02722 1.20155 0.87866 0.85361 0.77032 1.90736 1.78685 1.22401 1.47829 1.45914 1.07265 1.08978 1.75714 1.21357 0.77607 0.98052 1.02506 1.21266 0.92740 0.96125 1.02839 1.21572 0.92640 1.04677 0.93118 1.20182 0.95940 0.91850 0.86044 1.42312 1.71342 1.18560 1.04964 1.19297 1.31252 1.01837 0.84316 0.91177 1.24710 1.01538 0.96761 0.98043 1.69670 1.46262 1.07929 1.34463 0.86128 0.77414 0.77206 0.85549 1.20567 1.21924 1.21931 1.22997 1.01394 0.93974 1.01983 1.22968 1.03292 0.94979 1.00268 0.93951 0.94009 0.89469 0.92992 0.93070 0.89996 0.89886 0.92795 0.92932 0.89978 0.90273 0.76506 0.90847 0.91765 0.91979 0.89157 0.95584 0.96436 0.78164 0.93672 0.89319 0.88695 0.88915 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.53 10.70 -35.23 -0.38 -3.91 16 3 C 0.07 0.47 5.94 37.16 0.22 0.69 16 4 C -0.12 -1.03 5.95 -26.73 -0.16 -1.19 16 5 C 0.06 0.53 5.94 37.16 0.22 0.75 16 6 O -0.36 -4.44 9.88 -55.14 -0.54 -4.99 16 7 C 0.04 0.46 6.42 36.01 0.23 0.69 16 8 C 0.51 7.21 7.91 -10.98 -0.09 7.12 16 9 O -0.52 -9.85 16.50 -14.35 -0.24 -10.09 16 10 N -0.73 -9.04 5.56 -60.30 -0.33 -9.37 16 11 C 0.13 1.83 5.49 -4.04 -0.02 1.81 16 12 C -0.09 -1.33 5.20 -26.73 -0.14 -1.47 16 13 C -0.12 -1.89 1.65 -154.51 -0.25 -2.15 16 14 C 0.19 3.79 6.15 -4.04 -0.02 3.76 16 15 N -0.73 -18.06 5.23 -59.91 -0.31 -18.37 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C -0.17 -2.39 9.87 -26.73 -0.26 -2.65 16 25 C -0.18 -2.36 9.57 -26.73 -0.26 -2.62 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 38 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 39 H 0.06 0.91 7.72 -51.93 -0.40 0.50 16 40 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 41 H 0.09 1.53 6.94 -51.93 -0.36 1.17 16 42 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 43 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 44 H 0.38 9.91 6.80 -40.82 -0.28 9.63 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 47 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 408.22 15.07 6.15 6.15 Total: -1.00 -35.05 408.22 -8.54 -43.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.92 Total: 7.83 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.33 Total: -1.21 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.08 Total: -54.80 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.16 Total: -18.99 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.05 -8.54 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167670245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.511 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds