Wall clock time and date at job start Tue Mar 31 2020 10:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99642 * 2 1 4 4 C 1.52998 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46996 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.42893 * 113.99943 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46993 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00332 * 0.28142 * 8 7 6 10 10 N 1.34778 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99971 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47081 * 175.02103 * 12 11 10 14 14 C 1.53002 * 115.54988 * 278.03010 * 13 12 11 15 15 N 1.46503 * 109.47093 * 303.89866 * 14 13 12 16 16 C 1.36936 * 119.99878 * 175.59100 * 15 14 13 17 17 H 1.08003 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99556 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47300 * 119.99722 * 20 18 16 23 23 H 1.48498 * 109.47151 * 239.99914 * 20 18 16 24 24 C 1.53002 * 117.49930 * 132.32289 * 13 12 11 25 25 C 1.52996 * 117.50135 * 63.70068 * 13 12 11 26 26 H 1.08994 * 109.47034 * 299.99714 * 1 2 3 27 27 H 1.09000 * 109.46952 * 60.00014 * 1 2 3 28 28 H 1.09003 * 109.46381 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47372 * 59.99722 * 3 2 1 30 30 H 1.09004 * 109.47252 * 299.99781 * 3 2 1 31 31 H 1.09003 * 109.47359 * 60.00619 * 4 3 2 32 32 H 1.09003 * 109.47485 * 299.99762 * 4 3 2 33 33 H 1.09001 * 109.46943 * 60.00436 * 5 4 3 34 34 H 1.09003 * 109.46878 * 300.00218 * 5 4 3 35 35 H 1.09003 * 109.46906 * 60.00853 * 7 6 5 36 36 H 1.08990 * 109.47654 * 300.00216 * 7 6 5 37 37 H 0.96997 * 119.99715 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46565 * 299.99242 * 11 10 8 39 39 H 1.08995 * 109.47366 * 59.99575 * 11 10 8 40 40 H 1.09002 * 109.47289 * 295.02052 * 12 11 10 41 41 H 1.08997 * 109.47472 * 55.02059 * 12 11 10 42 42 H 1.08994 * 109.46881 * 63.89829 * 14 13 12 43 43 H 1.09002 * 109.46821 * 183.90185 * 14 13 12 44 44 H 0.97005 * 119.99882 * 355.59554 * 15 14 13 45 45 H 0.97004 * 119.99496 * 180.02562 * 19 18 16 46 46 H 1.09005 * 117.49730 * 0.02562 * 24 13 12 47 47 H 1.08999 * 117.50027 * 145.01652 * 24 13 12 48 48 H 1.09000 * 117.50494 * 214.98016 * 25 13 12 49 49 H 1.09006 * 117.49881 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0000 6 8 5.5822 2.4698 0.0012 7 6 6.2646 3.7253 0.0001 8 6 7.7528 3.4881 0.0009 9 8 8.1864 2.3555 -0.0029 10 7 8.6020 4.5347 0.0006 11 6 10.0488 4.3042 0.0008 12 6 10.7794 5.6484 -0.0002 13 6 12.2855 5.4103 0.1252 14 6 12.8003 5.1750 1.5467 15 7 12.4157 6.3033 2.3984 16 6 12.6899 6.2732 3.7397 17 1 13.1900 5.4179 4.1696 18 6 12.3250 7.3420 4.5468 19 7 11.7159 8.3845 4.0227 20 14 12.6996 7.3014 6.3763 21 1 13.3854 6.0279 6.7130 22 1 13.5789 8.4454 6.7271 23 1 11.4318 7.3981 7.1435 24 6 13.2023 6.1598 -0.8436 25 6 12.9785 4.6556 -1.0110 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8575 0.6438 -0.8892 32 1 3.8568 0.6440 0.8909 33 1 3.8357 3.1240 0.8896 34 1 3.8363 3.1229 -0.8905 35 1 5.9860 4.2909 0.8893 36 1 5.9873 4.2888 -0.8906 37 1 8.2552 5.4406 -0.0004 38 1 10.3265 3.7399 0.8911 39 1 10.3268 3.7392 -0.8889 40 1 10.5711 6.1745 -0.9318 41 1 10.4354 6.2497 0.8413 42 1 12.3670 4.2566 1.9426 43 1 13.8866 5.0864 1.5296 44 1 11.9668 7.0716 2.0121 45 1 11.4613 9.1316 4.5867 46 1 12.7325 6.8229 -1.5701 47 1 14.1725 6.4857 -0.4684 48 1 13.8014 3.9917 -0.7461 49 1 12.3614 4.3291 -1.8482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167670245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:20 Heat of formation + Delta-G solvation = -126.848922 kcal Electronic energy + Delta-G solvation = -25360.372204 eV Core-core repulsion = 21515.673122 eV Total energy + Delta-G solvation = -3844.699081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88682 -39.61743 -39.13934 -38.41809 -36.08918 -35.73507 -33.83638 -32.79264 -31.57583 -29.02346 -27.86038 -27.54994 -25.57332 -24.63006 -24.37308 -22.97799 -22.66134 -21.71225 -19.95725 -19.04976 -18.25092 -17.91239 -17.69023 -17.28841 -16.99824 -16.79082 -16.56059 -16.38622 -15.96705 -15.66806 -15.55545 -15.26954 -15.05166 -14.81547 -14.45626 -14.09883 -13.91958 -13.85218 -13.16690 -13.10696 -13.00697 -12.82217 -12.73691 -12.54603 -12.44050 -12.26692 -12.09944 -12.06962 -11.97160 -11.93857 -11.82485 -11.11396 -10.96617 -10.87154 -10.69985 -10.64090 -10.52978 -10.11683 -8.96855 -7.95202 -5.22208 1.46373 1.46741 1.56053 1.56672 1.76851 2.53934 2.60853 2.90467 3.27743 3.38136 3.71623 3.84887 3.86035 3.91513 3.99291 4.09909 4.11585 4.18587 4.26334 4.27202 4.28372 4.41312 4.43929 4.44722 4.48868 4.52144 4.56469 4.57979 4.65679 4.84749 4.85979 4.94714 4.98845 5.07214 5.08513 5.10193 5.19468 5.27923 5.34497 5.39051 5.42560 5.49677 6.05002 6.22710 6.27870 6.55206 7.21941 7.35153 8.10699 8.37430 9.28105 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002079 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.877114 B =13467.936057 C =15170.669886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.067 3.933 4 C -0.120 4.120 5 C 0.063 3.937 6 O -0.400 6.400 7 C 0.049 3.951 8 C 0.504 3.496 9 O -0.579 6.579 10 N -0.714 5.714 11 C 0.135 3.865 12 C -0.077 4.077 13 C -0.142 4.142 14 C 0.188 3.812 15 N -0.734 5.734 16 C -0.246 4.246 17 H 0.068 0.932 18 C -0.070 4.070 19 N -0.963 5.963 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.162 4.162 25 C -0.153 4.153 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.417 0.583 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 -7.492 -14.799 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.009 4.009 4 C -0.157 4.157 5 C -0.013 4.013 6 O -0.320 6.320 7 C -0.030 4.030 8 C 0.291 3.709 9 O -0.459 6.459 10 N -0.368 5.368 11 C 0.012 3.988 12 C -0.115 4.115 13 C -0.143 4.143 14 C 0.061 3.939 15 N -0.377 5.377 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.263 4.263 19 N -0.614 5.614 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.199 4.199 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.254 0.746 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.984 -8.734 -14.643 25.517 hybrid contribution -0.085 1.076 1.291 1.682 sum -19.070 -7.659 -13.353 24.507 Atomic orbital electron populations 1.22935 0.79163 1.03819 1.01112 1.87839 1.21774 1.28998 1.95686 1.22401 0.92056 0.84573 1.01900 1.21343 0.93982 0.97022 1.03399 1.22528 0.79078 0.97092 1.02560 1.87953 1.19632 1.28517 1.95850 1.22320 0.87720 0.87376 1.05601 1.20999 0.89808 0.84561 0.75528 1.90706 1.79913 1.24633 1.50603 1.45820 1.06473 1.09769 1.74715 1.21150 0.78853 0.97728 1.01109 1.21110 0.91606 0.95672 1.03092 1.21430 0.93783 1.07888 0.91239 1.20220 0.95502 0.89854 0.88304 1.42430 1.71183 1.19521 1.04579 1.19632 1.30568 1.01652 0.85936 0.91360 1.25456 1.02082 0.96684 1.02050 1.69800 1.47483 1.08439 1.35692 0.85147 0.77035 0.77325 0.80705 1.19643 1.21858 1.21903 1.23061 1.00339 0.95158 1.01318 1.23050 1.02642 0.94419 0.98946 0.92987 0.92761 0.88855 0.91674 0.91248 0.91517 0.91996 0.91101 0.90375 0.87631 0.86418 0.74578 0.94372 0.91089 0.88901 0.91966 0.96798 0.96903 0.78906 0.93961 0.87165 0.89918 0.88660 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.42 10.70 -148.98 -1.59 -9.01 16 3 C 0.07 0.87 5.94 71.98 0.43 1.30 16 4 C -0.12 -2.04 5.95 30.60 0.18 -1.86 16 5 C 0.06 0.93 5.94 71.98 0.43 1.36 16 6 O -0.40 -9.50 9.88 -129.94 -1.28 -10.78 16 7 C 0.05 0.89 6.42 71.24 0.46 1.35 16 8 C 0.50 13.92 7.91 87.66 0.69 14.61 16 9 O -0.58 -22.43 16.50 16.01 0.26 -22.16 16 10 N -0.71 -17.04 5.56 -463.06 -2.57 -19.62 16 11 C 0.14 3.83 5.49 86.38 0.47 4.31 16 12 C -0.08 -2.14 5.20 30.59 0.16 -1.98 16 13 C -0.14 -4.41 1.65 -52.18 -0.09 -4.49 16 14 C 0.19 7.72 6.15 86.38 0.53 8.25 16 15 N -0.73 -37.13 5.23 -343.44 -1.80 -38.93 16 16 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.96 -57.81 13.06 21.65 0.28 -57.53 16 20 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.16 -4.31 9.87 30.59 0.30 -4.01 16 25 C -0.15 -3.72 9.57 30.59 0.29 -3.43 16 26 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 7.16 8.47 -92.71 -0.79 6.37 16 38 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 39 H 0.07 1.92 7.72 -2.39 -0.02 1.90 16 40 H 0.09 2.01 7.93 -2.39 -0.02 2.00 16 41 H 0.06 2.10 6.94 -2.39 -0.02 2.09 16 42 H 0.01 0.61 7.96 -2.39 -0.02 0.59 16 43 H 0.01 0.55 8.10 -2.39 -0.02 0.53 16 44 H 0.38 19.86 6.80 -92.70 -0.63 19.23 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.11 2.47 8.07 -2.38 -0.02 2.45 16 47 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.11 2.28 7.90 -2.38 -0.02 2.26 16 Total: -1.00 -78.29 408.22 1.25 -77.04 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.49 Total: 32.26 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.42 Total: 0.28 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.09 Total: -116.07 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.61 Total: -41.95 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -78.29 1.25 -77.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167670245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.809 kcal (2) G-P(sol) polarization free energy of solvation -78.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds