Wall clock time and date at job start Tue Mar 31 2020 11:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47303 * 174.65565 * 3 2 1 5 5 H 1.48500 * 109.47540 * 294.66139 * 3 2 1 6 6 H 1.48502 * 109.46993 * 54.66168 * 3 2 1 7 7 C 1.37884 * 120.00177 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84534 * 349.20654 * 7 2 1 9 9 C 1.53232 * 108.53209 * 231.32026 * 8 7 2 10 10 C 1.52951 * 109.41019 * 305.37663 * 9 8 7 11 11 H 1.09002 * 109.40976 * 303.56473 * 10 9 8 12 12 N 1.46499 * 109.41590 * 183.70484 * 10 9 8 13 13 C 1.39676 * 120.00014 * 154.85758 * 12 10 9 14 14 C 1.38916 * 120.07267 * 359.72198 * 13 12 10 15 15 C 1.38101 * 119.92017 * 179.76973 * 14 13 12 16 16 C 1.38288 * 120.07774 * 0.50660 * 15 14 13 17 17 C 1.50703 * 119.92745 * 179.72263 * 16 15 14 18 18 H 1.08995 * 109.50309 * 179.97438 * 17 16 15 19 19 C 1.53120 * 109.49987 * 59.82627 * 17 16 15 20 20 C 1.53128 * 109.15769 * 182.40297 * 19 17 16 21 21 C 1.53042 * 109.27572 * 57.65735 * 20 19 17 22 22 N 1.46852 * 109.52067 * 300.81702 * 21 20 19 23 23 C 1.46845 * 111.19546 * 61.74680 * 22 21 20 24 24 C 1.38292 * 120.14786 * 359.74692 * 16 15 14 25 25 C 1.38101 * 120.07379 * 359.97438 * 24 16 15 26 26 C 1.52957 * 109.76005 * 63.63080 * 10 9 8 27 27 C 1.51269 * 120.85019 * 169.17970 * 7 2 1 28 28 H 0.96998 * 120.00430 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.62494 * 111.61232 * 8 7 2 30 30 H 1.08996 * 109.62782 * 351.03476 * 8 7 2 31 31 H 1.09006 * 109.47957 * 185.39267 * 9 8 7 32 32 H 1.09004 * 109.48211 * 65.35753 * 9 8 7 33 33 H 0.96998 * 119.99805 * 334.85227 * 12 10 9 34 34 H 1.07999 * 120.03886 * 0.02562 * 14 13 12 35 35 H 1.08010 * 119.96463 * 180.25532 * 15 14 13 36 36 H 1.09001 * 109.52474 * 302.30923 * 19 17 16 37 37 H 1.08994 * 109.52319 * 62.50206 * 19 17 16 38 38 H 1.08996 * 109.50412 * 297.71747 * 20 19 17 39 39 H 1.08996 * 109.53504 * 177.61408 * 20 19 17 40 40 H 1.08999 * 109.45658 * 180.80673 * 21 20 19 41 41 H 1.08995 * 109.46384 * 60.83173 * 21 20 19 42 42 H 1.00897 * 110.99867 * 185.83969 * 22 21 20 43 43 H 1.09002 * 109.45950 * 178.23800 * 23 22 21 44 44 H 1.08997 * 109.46791 * 58.27015 * 23 22 21 45 45 H 1.07997 * 119.95943 * 180.02562 * 24 16 15 46 46 H 1.08000 * 120.03469 * 180.02562 * 25 24 16 47 47 H 1.08996 * 109.48588 * 56.35020 * 26 10 9 48 48 H 1.09000 * 109.48201 * 176.39323 * 26 10 9 49 49 H 1.09003 * 109.62665 * 248.38911 * 27 7 2 50 50 H 1.08998 * 109.62664 * 8.76870 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7038 1.3494 0.1304 5 1 1.9908 2.3386 -1.2723 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2875 -2.5038 0.2421 9 6 2.0265 -3.2661 1.3470 10 6 3.4996 -3.4156 0.9636 11 1 3.5735 -3.9113 -0.0044 12 7 4.1872 -4.2202 1.9765 13 6 5.3403 -4.9323 1.6382 14 6 5.8330 -4.8832 0.3403 15 6 6.9760 -5.5846 0.0105 16 6 7.6239 -6.3436 0.9679 17 6 8.8674 -7.1127 0.6026 18 1 9.2353 -7.6468 1.4786 19 6 9.9417 -6.1413 0.1058 20 6 11.1797 -6.9359 -0.3194 21 6 10.7860 -7.9435 -1.4019 22 7 9.7568 -8.8502 -0.8774 23 6 8.5408 -8.1152 -0.5065 24 6 7.1330 -6.3988 2.2595 25 6 5.9938 -5.6953 2.5976 26 6 4.1546 -2.0359 0.8795 27 6 3.4971 -1.2279 -0.2443 28 1 -0.4851 0.8400 0.0004 29 1 1.2865 -3.0956 -0.6733 30 1 0.2623 -2.3073 0.5556 31 1 1.5804 -4.2533 1.4683 32 1 1.9489 -2.7143 2.2838 33 1 3.8418 -4.2584 2.8821 34 1 5.3253 -4.2938 -0.4088 35 1 7.3621 -5.5436 -0.9974 36 1 9.5590 -5.5795 -0.7462 37 1 10.2086 -5.4525 0.9072 38 1 11.5849 -7.4668 0.5419 39 1 11.9328 -6.2538 -0.7138 40 1 11.6624 -8.5207 -1.6966 41 1 10.3937 -7.4111 -2.2683 42 1 9.5488 -9.5827 -1.5393 43 1 7.7864 -8.8171 -0.1511 44 1 8.1590 -7.5819 -1.3771 45 1 7.6416 -6.9922 3.0049 46 1 5.6112 -5.7385 3.6066 47 1 4.0256 -1.5138 1.8275 48 1 5.2180 -2.1506 0.6692 49 1 3.7005 -1.7017 -1.2047 50 1 3.8908 -0.2115 -0.2468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167848410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:21 Heat of formation + Delta-G solvation = 0.127237 kcal Electronic energy + Delta-G solvation = -26043.072495 eV Core-core repulsion = 22647.021528 eV Total energy + Delta-G solvation = -3396.050968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87145 -38.52157 -37.07127 -34.49210 -32.61500 -31.84285 -31.07683 -30.67599 -29.72676 -28.10833 -26.33721 -23.91595 -23.31796 -22.92880 -21.85440 -21.38453 -20.57988 -19.57689 -19.28484 -17.28163 -16.79451 -16.07290 -15.54974 -15.11364 -14.78396 -14.51812 -14.31000 -14.02885 -13.86629 -13.75092 -13.45037 -13.39887 -13.06653 -12.90757 -12.71331 -12.56843 -12.31849 -12.15216 -11.92273 -11.52960 -11.35173 -11.06305 -11.04582 -10.92808 -10.77693 -10.59851 -10.56029 -10.39093 -10.13628 -10.02495 -9.65586 -9.34556 -9.00381 -8.72943 -8.64970 -8.64107 -8.44272 -6.94586 -6.15975 -4.05005 1.68908 1.84632 3.22916 3.33309 3.33813 3.88487 3.95482 4.10625 4.34773 4.66402 4.73720 4.75932 4.99074 5.10983 5.15596 5.19397 5.22203 5.26253 5.40113 5.53378 5.56928 5.62529 5.66884 5.67444 5.71890 5.84582 5.86716 5.91437 6.02697 6.10447 6.12579 6.24646 6.26760 6.44026 6.52264 6.61630 6.66813 6.70473 6.79200 6.83094 6.85237 6.93494 6.99730 7.11346 7.12776 7.20151 7.38369 7.56977 7.68322 7.73755 7.84063 8.16801 8.33486 8.91491 9.50200 10.93521 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.002612 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.457183 B =10716.693972 C =11217.634892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.490 4.490 8 C 0.015 3.985 9 C -0.115 4.115 10 C 0.160 3.840 11 H 0.068 0.932 12 N -0.741 5.741 13 C 0.230 3.770 14 C -0.197 4.197 15 C -0.064 4.064 16 C -0.155 4.155 17 C -0.030 4.030 18 H 0.078 0.922 19 C -0.114 4.114 20 C -0.118 4.118 21 C 0.057 3.943 22 N -0.693 5.693 23 C 0.066 3.934 24 C -0.065 4.065 25 C -0.207 4.207 26 C -0.118 4.118 27 C -0.024 4.024 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.341 0.659 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.051 0.949 48 H 0.034 0.966 49 H 0.016 0.984 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.685 -14.335 1.029 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.508 4.508 8 C -0.023 4.023 9 C -0.153 4.153 10 C 0.056 3.944 11 H 0.086 0.914 12 N -0.366 5.366 13 C 0.123 3.877 14 C -0.220 4.220 15 C -0.083 4.083 16 C -0.157 4.157 17 C -0.049 4.049 18 H 0.096 0.904 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.073 4.073 22 N -0.323 5.323 23 C -0.064 4.064 24 C -0.084 4.084 25 C -0.230 4.230 26 C -0.157 4.157 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.035 0.965 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.652 -14.089 1.500 22.635 hybrid contribution -0.195 1.205 -0.445 1.300 sum 17.457 -12.884 1.055 21.722 Atomic orbital electron populations 1.69891 1.06244 1.26918 1.49297 1.24848 0.94618 0.98620 0.94523 0.86764 0.81135 0.83699 0.77820 1.18058 1.20898 1.21227 1.20026 0.90891 0.91871 1.48055 1.19318 0.97344 0.93453 0.92208 1.21920 0.93255 0.98499 1.01635 1.20983 0.92427 0.90562 0.90431 0.91392 1.45300 1.26675 1.51216 1.13410 1.17940 0.86723 0.89863 0.93132 1.20752 0.99562 1.06104 0.95587 1.20639 0.94213 0.95157 0.98261 1.19353 0.98859 1.03320 0.94210 1.19935 0.92483 0.94294 0.98173 0.90369 1.21669 0.94861 0.97560 1.01036 1.21607 0.97663 0.97326 0.99036 1.21924 0.95116 0.94490 0.95749 1.60270 1.10690 1.14180 1.47204 1.22008 0.91160 0.95998 0.97191 1.20648 0.94929 0.97487 0.95334 1.20518 0.99458 1.04282 0.98761 1.22009 0.97009 0.95699 1.00979 1.19939 0.96017 0.96560 0.93662 0.92632 0.97592 0.92500 0.94630 0.92914 0.77338 0.85862 0.87070 0.92117 0.91674 0.91267 0.91740 0.91097 0.95312 0.84140 0.90749 0.94998 0.86848 0.86776 0.93051 0.94730 0.96539 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 12.82 55.43 0.71 -24.44 16 2 C 0.08 2.06 5.44 -17.82 -0.10 1.97 16 3 Si 0.88 20.54 27.95 -169.99 -4.75 15.79 16 4 H -0.26 -5.74 5.57 56.52 0.32 -5.42 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.49 -12.57 5.48 -98.92 -0.54 -13.11 16 8 C 0.01 0.36 5.93 -27.48 -0.16 0.19 16 9 C -0.11 -2.31 5.40 -26.64 -0.14 -2.46 16 10 C 0.16 2.96 2.05 -67.98 -0.14 2.82 16 11 H 0.07 1.31 6.47 -51.93 -0.34 0.97 16 12 N -0.74 -11.81 5.24 -52.21 -0.27 -12.08 16 13 C 0.23 3.52 6.63 -83.78 -0.56 2.96 16 14 C -0.20 -3.02 8.84 -39.38 -0.35 -3.37 16 15 C -0.06 -0.85 8.67 -39.61 -0.34 -1.19 16 16 C -0.15 -1.88 4.79 -104.58 -0.50 -2.39 16 17 C -0.03 -0.31 2.52 -91.69 -0.23 -0.54 16 18 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 19 C -0.11 -1.10 5.13 -26.60 -0.14 -1.23 16 20 C -0.12 -0.98 6.09 -26.64 -0.16 -1.14 16 21 C 0.06 0.45 6.55 -3.83 -0.03 0.42 16 22 N -0.69 -5.96 6.85 -113.82 -0.78 -6.74 16 23 C 0.07 0.63 5.66 -3.84 -0.02 0.61 16 24 C -0.07 -0.81 9.66 -39.61 -0.38 -1.19 16 25 C -0.21 -2.80 9.90 -39.38 -0.39 -3.19 16 26 C -0.12 -2.37 5.45 -26.63 -0.15 -2.51 16 27 C -0.02 -0.54 5.66 -27.48 -0.16 -0.70 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 1.51 7.19 -51.93 -0.37 1.13 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.39 5.68 8.61 -40.82 -0.35 5.33 16 34 H 0.12 1.99 6.21 -52.49 -0.33 1.67 16 35 H 0.11 1.33 7.06 -52.48 -0.37 0.96 16 36 H 0.06 0.61 7.30 -51.93 -0.38 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.34 2.39 8.90 -39.29 -0.35 2.04 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.32 7.35 -51.93 -0.38 -0.06 16 45 H 0.11 1.18 7.94 -52.49 -0.42 0.76 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.03 0.66 7.80 -51.93 -0.40 0.25 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.04 0.95 4.35 -51.93 -0.23 0.73 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -27.36 375.49 -12.54 -39.90 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.62 Total: 5.95 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -4.48 Total: -24.04 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.34 Total: -43.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.75 Total: 15.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.36 -12.54 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167848410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.022 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds