Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47303 * 174.65565 * 3 2 1 5 5 H 1.48500 * 109.47540 * 294.66139 * 3 2 1 6 6 H 1.48502 * 109.46993 * 54.66168 * 3 2 1 7 7 C 1.37884 * 120.00177 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84534 * 349.20654 * 7 2 1 9 9 C 1.53232 * 108.53209 * 231.32026 * 8 7 2 10 10 C 1.52951 * 109.41019 * 305.37663 * 9 8 7 11 11 H 1.09002 * 109.40976 * 303.56473 * 10 9 8 12 12 N 1.46499 * 109.41590 * 183.70484 * 10 9 8 13 13 C 1.39676 * 120.00014 * 154.85758 * 12 10 9 14 14 C 1.38916 * 120.07267 * 359.72198 * 13 12 10 15 15 C 1.38101 * 119.92017 * 179.76973 * 14 13 12 16 16 C 1.38288 * 120.07774 * 0.50660 * 15 14 13 17 17 C 1.50703 * 119.92745 * 179.72263 * 16 15 14 18 18 H 1.08995 * 109.50309 * 179.97438 * 17 16 15 19 19 C 1.53120 * 109.49987 * 59.82627 * 17 16 15 20 20 C 1.53128 * 109.15769 * 182.40297 * 19 17 16 21 21 C 1.53042 * 109.27572 * 57.65735 * 20 19 17 22 22 N 1.46852 * 109.52067 * 300.81702 * 21 20 19 23 23 C 1.46845 * 111.19546 * 61.74680 * 22 21 20 24 24 C 1.38292 * 120.14786 * 359.74692 * 16 15 14 25 25 C 1.38101 * 120.07379 * 359.97438 * 24 16 15 26 26 C 1.52957 * 109.76005 * 63.63080 * 10 9 8 27 27 C 1.51269 * 120.85019 * 169.17970 * 7 2 1 28 28 H 0.96998 * 120.00430 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.62494 * 111.61232 * 8 7 2 30 30 H 1.08996 * 109.62782 * 351.03476 * 8 7 2 31 31 H 1.09006 * 109.47957 * 185.39267 * 9 8 7 32 32 H 1.09004 * 109.48211 * 65.35753 * 9 8 7 33 33 H 0.96998 * 119.99805 * 334.85227 * 12 10 9 34 34 H 1.07999 * 120.03886 * 0.02562 * 14 13 12 35 35 H 1.08010 * 119.96463 * 180.25532 * 15 14 13 36 36 H 1.09001 * 109.52474 * 302.30923 * 19 17 16 37 37 H 1.08994 * 109.52319 * 62.50206 * 19 17 16 38 38 H 1.08996 * 109.50412 * 297.71747 * 20 19 17 39 39 H 1.08996 * 109.53504 * 177.61408 * 20 19 17 40 40 H 1.08999 * 109.45658 * 180.80673 * 21 20 19 41 41 H 1.08995 * 109.46384 * 60.83173 * 21 20 19 42 42 H 1.00897 * 110.99867 * 185.83969 * 22 21 20 43 43 H 1.09002 * 109.45950 * 178.23800 * 23 22 21 44 44 H 1.08997 * 109.46791 * 58.27015 * 23 22 21 45 45 H 1.07997 * 119.95943 * 180.02562 * 24 16 15 46 46 H 1.08000 * 120.03469 * 180.02562 * 25 24 16 47 47 H 1.08996 * 109.48588 * 56.35020 * 26 10 9 48 48 H 1.09000 * 109.48201 * 176.39323 * 26 10 9 49 49 H 1.09003 * 109.62665 * 248.38911 * 27 7 2 50 50 H 1.08998 * 109.62664 * 8.76870 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7038 1.3494 0.1304 5 1 1.9908 2.3386 -1.2723 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1941 -0.0005 8 6 1.2875 -2.5038 0.2421 9 6 2.0265 -3.2661 1.3470 10 6 3.4996 -3.4156 0.9636 11 1 3.5735 -3.9113 -0.0044 12 7 4.1872 -4.2202 1.9765 13 6 5.3403 -4.9323 1.6382 14 6 5.8330 -4.8832 0.3403 15 6 6.9760 -5.5846 0.0105 16 6 7.6239 -6.3436 0.9679 17 6 8.8674 -7.1127 0.6026 18 1 9.2353 -7.6468 1.4786 19 6 9.9417 -6.1413 0.1058 20 6 11.1797 -6.9359 -0.3194 21 6 10.7860 -7.9435 -1.4019 22 7 9.7568 -8.8502 -0.8774 23 6 8.5408 -8.1152 -0.5065 24 6 7.1330 -6.3988 2.2595 25 6 5.9938 -5.6953 2.5976 26 6 4.1546 -2.0359 0.8795 27 6 3.4971 -1.2279 -0.2443 28 1 -0.4851 0.8400 0.0004 29 1 1.2865 -3.0956 -0.6733 30 1 0.2623 -2.3073 0.5556 31 1 1.5804 -4.2533 1.4683 32 1 1.9489 -2.7143 2.2838 33 1 3.8418 -4.2584 2.8821 34 1 5.3253 -4.2938 -0.4088 35 1 7.3621 -5.5436 -0.9974 36 1 9.5590 -5.5795 -0.7462 37 1 10.2086 -5.4525 0.9072 38 1 11.5849 -7.4668 0.5419 39 1 11.9328 -6.2538 -0.7138 40 1 11.6624 -8.5207 -1.6966 41 1 10.3937 -7.4111 -2.2683 42 1 9.5488 -9.5827 -1.5393 43 1 7.7864 -8.8171 -0.1511 44 1 8.1590 -7.5819 -1.3771 45 1 7.6416 -6.9922 3.0049 46 1 5.6112 -5.7385 3.6066 47 1 4.0256 -1.5138 1.8275 48 1 5.2180 -2.1506 0.6692 49 1 3.7005 -1.7017 -1.2047 50 1 3.8908 -0.2115 -0.2468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167848410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = -14.152475 kcal Electronic energy + Delta-G solvation = -26043.691710 eV Core-core repulsion = 22647.021528 eV Total energy + Delta-G solvation = -3396.670182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87635 -39.59505 -38.39432 -35.89060 -34.01542 -32.90159 -32.14696 -31.77390 -31.42739 -29.51472 -27.68372 -24.67183 -24.31895 -24.22526 -23.36606 -22.91441 -21.72099 -20.98411 -20.26777 -18.52949 -17.87625 -17.49602 -16.86610 -16.44417 -16.03462 -15.56898 -15.32056 -15.10957 -15.00898 -14.75246 -14.63449 -14.61236 -14.36395 -14.21237 -13.97284 -13.94346 -13.70919 -13.50112 -13.28115 -12.78619 -12.72798 -12.58718 -12.44848 -12.16327 -11.99563 -11.88416 -11.75601 -11.45031 -11.40520 -11.25548 -11.18445 -10.95468 -10.75257 -10.52428 -10.31691 -9.73351 -9.36612 -8.20076 -8.11755 -6.11851 0.63478 0.78554 1.36119 1.41498 1.49176 2.39927 2.60752 3.02743 3.09613 3.31785 3.90042 3.94812 4.01807 4.03730 4.19790 4.21429 4.23729 4.28798 4.44326 4.50104 4.51257 4.62153 4.70167 4.70648 4.72537 4.81113 4.87505 4.91341 4.93899 4.98258 5.03683 5.06487 5.07717 5.18610 5.21615 5.26236 5.27977 5.30683 5.36042 5.46820 5.56699 5.56927 5.60700 5.64081 5.76072 5.81063 5.92213 6.07888 6.13684 6.33360 6.52444 6.55470 6.93311 7.00139 7.45665 8.91291 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.002612 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.457183 B =10716.693972 C =11217.634892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.238 1.238 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.498 4.498 8 C 0.011 3.989 9 C -0.103 4.103 10 C 0.176 3.824 11 H 0.061 0.939 12 N -0.740 5.740 13 C 0.209 3.791 14 C -0.215 4.215 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.027 4.027 18 H 0.081 0.919 19 C -0.113 4.113 20 C -0.116 4.116 21 C 0.055 3.945 22 N -0.696 5.696 23 C 0.069 3.931 24 C -0.068 4.068 25 C -0.205 4.205 26 C -0.109 4.109 27 C -0.025 4.025 28 H 0.262 0.738 29 H -0.002 1.002 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.401 0.599 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.350 0.650 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.019 0.981 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.650 -15.652 1.672 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.162 1.162 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.517 4.517 8 C -0.027 4.027 9 C -0.141 4.141 10 C 0.071 3.929 11 H 0.079 0.921 12 N -0.368 5.368 13 C 0.105 3.895 14 C -0.238 4.238 15 C -0.086 4.086 16 C -0.149 4.149 17 C -0.045 4.045 18 H 0.099 0.901 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.074 4.074 22 N -0.328 5.328 23 C -0.061 4.061 24 C -0.086 4.086 25 C -0.228 4.228 26 C -0.148 4.148 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.236 0.764 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.169 0.831 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.156 0.844 46 H 0.148 0.852 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.037 0.963 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.660 -15.439 2.145 25.880 hybrid contribution -1.052 1.478 -0.686 1.939 sum 19.608 -13.961 1.459 24.114 Atomic orbital electron populations 1.70020 1.07768 1.27461 1.51635 1.25614 0.95248 1.01864 0.94908 0.85907 0.80925 0.79962 0.77451 1.16202 1.20976 1.21471 1.20618 0.92552 0.92207 1.46369 1.19277 0.96298 0.93861 0.93279 1.21696 0.94222 0.98583 0.99602 1.20558 0.91237 0.90204 0.90936 0.92100 1.44958 1.27175 1.51546 1.13089 1.18092 0.86906 0.90861 0.93670 1.20780 1.00494 1.06959 0.95538 1.20763 0.93736 0.95025 0.99102 1.19612 0.98994 1.02307 0.93979 1.19927 0.91714 0.94350 0.98546 0.90098 1.21651 0.95301 0.97470 1.00649 1.21596 0.97181 0.97430 0.99154 1.21979 0.95413 0.94540 0.95485 1.60266 1.10269 1.14408 1.47818 1.21917 0.91637 0.95805 0.96707 1.20978 0.94542 0.97181 0.95921 1.20745 0.99424 1.03460 0.99147 1.21875 0.97572 0.96019 0.99359 1.19937 0.94318 0.97181 0.94850 0.92843 0.98330 0.95592 0.92944 0.93334 0.76429 0.87323 0.86152 0.92754 0.92011 0.91343 0.90588 0.89646 0.95526 0.83084 0.90986 0.95616 0.84428 0.85154 0.93672 0.93453 0.96302 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 12.82 21.45 0.27 -54.16 16 2 C 0.02 1.20 5.44 84.66 0.46 1.66 16 3 Si 0.93 42.47 27.95 68.60 1.92 44.38 16 4 H -0.24 -10.06 5.57 99.48 0.55 -9.51 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.50 -25.89 5.48 -16.17 -0.09 -25.98 16 8 C 0.01 0.54 5.93 30.11 0.18 0.72 16 9 C -0.10 -4.12 5.40 30.66 0.17 -3.95 16 10 C 0.18 6.38 2.05 44.96 0.09 6.48 16 11 H 0.06 2.32 6.47 -2.39 -0.02 2.31 16 12 N -0.74 -22.54 5.24 -319.09 -1.67 -24.21 16 13 C 0.21 6.07 6.63 38.21 0.25 6.33 16 14 C -0.21 -6.36 8.84 22.40 0.20 -6.16 16 15 C -0.07 -1.70 8.67 22.25 0.19 -1.50 16 16 C -0.15 -3.24 4.79 -19.84 -0.10 -3.33 16 17 C -0.03 -0.48 2.52 -11.49 -0.03 -0.51 16 18 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 19 C -0.11 -1.94 5.13 30.68 0.16 -1.78 16 20 C -0.12 -1.62 6.09 30.65 0.19 -1.44 16 21 C 0.05 0.74 6.55 86.33 0.57 1.30 16 22 N -0.70 -10.35 6.85 -514.00 -3.52 -13.86 16 23 C 0.07 1.19 5.66 86.33 0.49 1.68 16 24 C -0.07 -1.48 9.66 22.25 0.21 -1.27 16 25 C -0.21 -5.04 9.90 22.40 0.22 -4.82 16 26 C -0.11 -4.26 5.45 30.66 0.17 -4.09 16 27 C -0.02 -1.12 5.66 30.11 0.17 -0.95 16 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 30 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.40 10.89 8.61 -92.71 -0.80 10.09 16 34 H 0.11 3.48 6.21 -2.91 -0.02 3.46 16 35 H 0.12 2.73 7.06 -2.91 -0.02 2.71 16 36 H 0.05 1.00 7.30 -2.39 -0.02 0.98 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.35 4.12 8.90 -89.70 -0.80 3.33 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.03 0.48 7.35 -2.39 -0.02 0.46 16 45 H 0.14 2.34 7.94 -2.91 -0.02 2.32 16 46 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.73 7.80 -2.39 -0.02 1.71 16 49 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.04 1.83 4.35 -2.39 -0.01 1.82 16 Total: -1.00 -58.93 375.49 -0.31 -59.24 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.81 Total: 26.24 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 3.50 Total: -37.63 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -4.92 Total: -92.24 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.92 Total: 44.38 kcal Total: -58.93 -0.31 -59.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167848410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.085 kcal (2) G-P(sol) polarization free energy of solvation -58.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds