Wall clock time and date at job start Tue Mar 31 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47455 * 239.99968 * 2 1 3 5 5 C 1.53003 * 109.46946 * 119.99738 * 2 1 3 6 6 C 1.52993 * 109.47067 * 47.96254 * 5 2 1 7 7 C 1.52999 * 109.47243 * 61.24451 * 6 5 2 8 8 C 1.53004 * 109.46996 * 181.24231 * 6 5 2 9 9 N 1.46498 * 109.47307 * 301.24292 * 6 5 2 10 10 C 1.39409 * 120.00041 * 184.25645 * 9 6 5 11 11 C 1.38730 * 120.23142 * 359.61272 * 10 9 6 12 12 C 1.38440 * 120.15512 * 180.02562 * 11 10 9 13 13 C 1.37984 * 120.70938 * 359.97438 * 12 11 10 14 14 C 1.39158 * 120.13277 * 0.02994 * 13 12 11 15 15 N 1.38140 * 132.75069 * 179.97438 * 14 13 12 16 16 H 0.97002 * 124.69707 * 359.97438 * 15 14 13 17 17 C 1.35669 * 110.60289 * 179.21025 * 15 14 13 18 18 C 1.38958 * 109.24760 * 0.69221 * 17 15 14 19 19 C 1.40900 * 126.93760 * 179.45539 * 18 17 15 20 20 H 1.08000 * 120.00448 * 176.17374 * 19 18 17 21 21 C 1.39675 * 119.99723 * 356.17434 * 19 18 17 22 22 N 1.31080 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47298 * 120.00000 * 23 21 19 26 26 H 1.48505 * 109.46983 * 239.99697 * 23 21 19 27 27 C 1.39767 * 120.22683 * 179.33748 * 10 9 6 28 28 H 1.08993 * 109.47077 * 302.90321 * 1 2 3 29 29 H 1.08997 * 109.46646 * 62.90625 * 1 2 3 30 30 H 1.08998 * 109.46761 * 182.90143 * 1 2 3 31 31 H 1.08999 * 109.47336 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47037 * 299.99791 * 3 2 1 33 33 H 1.09004 * 109.47342 * 59.99491 * 3 2 1 34 34 H 1.08998 * 109.46791 * 344.00230 * 4 2 1 35 35 H 1.08994 * 109.47263 * 104.00246 * 4 2 1 36 36 H 1.09000 * 109.47182 * 224.00594 * 4 2 1 37 37 H 1.08997 * 109.47046 * 287.96028 * 5 2 1 38 38 H 1.08999 * 109.46887 * 167.96424 * 5 2 1 39 39 H 1.09002 * 109.47324 * 158.02584 * 7 6 5 40 40 H 1.08997 * 109.47266 * 38.02609 * 7 6 5 41 41 H 1.09001 * 109.47431 * 278.02507 * 7 6 5 42 42 H 1.08999 * 109.47184 * 304.71594 * 8 6 5 43 43 H 1.08998 * 109.47305 * 64.71647 * 8 6 5 44 44 H 1.09008 * 109.47028 * 184.71869 * 8 6 5 45 45 H 0.96999 * 120.00053 * 4.25576 * 9 6 5 46 46 H 1.07998 * 119.91649 * 0.02562 * 11 10 9 47 47 H 1.08009 * 119.64583 * 179.97438 * 12 11 10 48 48 H 1.08005 * 119.93651 * 180.02562 * 13 12 11 49 49 H 1.08002 * 125.37221 * 180.11976 * 17 15 14 50 50 H 0.97002 * 119.99629 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.2993 -2.0504 1.4089 7 6 1.5738 -2.9365 0.1922 8 6 1.7872 -2.7572 2.6751 9 7 -0.1399 -1.7978 1.5144 10 6 -1.0171 -2.8541 1.7561 11 6 -0.5331 -4.1473 1.8897 12 6 -1.4056 -5.1951 2.1293 13 6 -2.7627 -4.9710 2.2389 14 6 -3.2707 -3.6820 2.1084 15 7 -4.5516 -3.1684 2.1684 16 1 -5.3509 -3.6950 2.3259 17 6 -4.5353 -1.8232 1.9931 18 6 -3.2258 -1.4031 1.7937 19 6 -2.7852 -0.0846 1.5640 20 1 -1.7289 0.1257 1.4843 21 6 -3.7147 0.9505 1.4394 22 7 -4.9968 0.6953 1.5357 23 14 -3.1307 2.6985 1.1341 24 1 -1.6474 2.7198 1.0648 25 1 -3.6928 3.1913 -0.1489 26 1 -3.5876 3.5738 2.2433 27 6 -2.3896 -2.6166 1.8714 28 1 -0.3633 0.5582 0.8628 29 1 -0.3632 0.4680 -0.9149 30 1 -0.3633 -1.0264 0.0520 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.2298 -1.3024 -1.6894 35 1 2.3956 0.0124 -1.9726 36 1 2.8581 -1.3876 -0.9755 37 1 1.8623 -0.0987 2.1262 38 1 3.1087 -0.9106 1.1487 39 1 1.3956 -3.9793 0.4546 40 1 2.6104 -2.8127 -0.1209 41 1 0.9109 -2.6488 -0.6238 42 1 2.8705 -2.8702 2.6337 43 1 1.5168 -2.1647 3.5491 44 1 1.3218 -3.7405 2.7446 45 1 -0.4825 -0.8957 1.4159 46 1 0.5268 -4.3370 1.8066 47 1 -1.0199 -6.1988 2.2315 48 1 -3.4321 -5.7976 2.4264 49 1 -5.4040 -1.1815 1.9978 50 1 -5.6422 1.4143 1.4495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169051815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:03 Heat of formation + Delta-G solvation = 108.469916 kcal Electronic energy + Delta-G solvation = -28506.051721 eV Core-core repulsion = 25114.698845 eV Total energy + Delta-G solvation = -3391.352876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40847 -39.10034 -36.17249 -34.32244 -33.48650 -32.11807 -29.39114 -28.57317 -28.16520 -27.65843 -26.34632 -26.01509 -25.77415 -24.49967 -21.33063 -20.74926 -19.69648 -19.03037 -18.78251 -17.21421 -15.84460 -15.69999 -15.25306 -15.01575 -14.51137 -14.29259 -14.09793 -13.93308 -13.52722 -13.38937 -12.91885 -12.69208 -12.58160 -12.50062 -12.08206 -12.00115 -11.85517 -11.66151 -11.50323 -11.40164 -11.26800 -11.21192 -11.03781 -10.99259 -10.71169 -10.64494 -10.42936 -10.27095 -10.16993 -9.93652 -9.66296 -9.51398 -9.40007 -9.29455 -8.80468 -7.33616 -6.85894 -6.44707 -5.91936 -3.93742 2.57224 2.84601 3.09056 3.16469 3.18525 4.08207 4.22366 4.30098 4.73191 4.85981 4.94965 5.02939 5.07357 5.26471 5.43758 5.57099 5.67401 5.68516 5.78132 5.83320 5.88316 5.90089 5.94000 6.00980 6.05625 6.09530 6.11575 6.15812 6.19805 6.22997 6.27981 6.31973 6.44142 6.56114 6.58399 6.64359 6.67733 6.73042 6.83189 6.92382 6.98727 7.24318 7.30558 7.34191 7.63365 7.64923 7.97640 8.00611 8.34822 8.50501 8.74324 8.82190 9.10394 9.21501 9.34655 10.53039 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009381 B = 0.008064 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.980965 B = 3471.312501 C = 6003.219726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.109 4.109 6 C 0.178 3.822 7 C -0.170 4.170 8 C -0.182 4.182 9 N -0.741 5.741 10 C 0.271 3.729 11 C -0.291 4.291 12 C -0.071 4.071 13 C -0.212 4.212 14 C 0.119 3.881 15 N -0.590 5.590 16 H 0.392 0.608 17 C -0.104 4.104 18 C 0.026 3.974 19 C -0.427 4.427 20 H 0.077 0.923 21 C 0.058 3.942 22 N -0.832 5.832 23 Si 0.901 3.099 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.279 1.279 27 C -0.188 4.188 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.425 0.575 46 H 0.125 0.875 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.188 0.812 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 -3.119 -1.879 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.147 4.147 6 C 0.090 3.910 7 C -0.228 4.228 8 C -0.240 4.240 9 N -0.387 5.387 10 C 0.167 3.833 11 C -0.315 4.315 12 C -0.091 4.091 13 C -0.236 4.236 14 C 0.006 3.994 15 N -0.191 5.191 16 H 0.225 0.775 17 C -0.228 4.228 18 C 0.021 3.979 19 C -0.460 4.460 20 H 0.095 0.905 21 C -0.151 4.151 22 N -0.463 5.463 23 Si 0.727 3.273 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.198 4.198 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.279 0.721 46 H 0.143 0.857 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.204 0.796 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.966 -2.888 -1.906 11.499 hybrid contribution -0.395 1.023 -0.015 1.097 sum 10.571 -1.865 -1.920 10.905 Atomic orbital electron populations 1.23666 0.93709 1.07459 1.01818 1.20537 0.96731 0.94626 0.94857 1.21957 1.00130 0.95996 1.01756 1.22339 1.01187 0.99992 0.96864 1.21982 0.99236 0.95506 0.97991 1.20052 0.82122 0.94340 0.94472 1.22799 1.01096 1.00299 0.98606 1.22695 1.00272 1.03260 0.97748 1.47065 1.03612 1.10421 1.77570 1.17241 0.87647 0.87853 0.90548 1.20604 0.99078 0.91561 1.20293 1.20150 0.92256 0.97002 0.99676 1.19524 0.95066 0.93067 1.15931 1.17945 0.85032 0.93396 1.03068 1.41570 1.05021 1.08479 1.63987 0.77548 1.23233 1.00736 0.80369 1.18477 1.17936 0.89578 0.90308 1.00113 1.18946 0.93753 0.90676 1.42627 0.90526 1.25543 0.94546 1.00271 0.94787 1.69497 1.01490 1.33045 1.42275 0.86352 0.79849 0.82759 0.78337 1.18639 1.20357 1.20442 1.18923 0.90757 0.95143 1.14984 0.91329 0.93236 0.85502 0.93182 0.92816 0.92870 0.91968 0.93605 0.92119 0.91708 0.91058 0.92053 0.92400 0.91173 0.92921 0.92567 0.89441 0.72118 0.85734 0.88208 0.88947 0.79586 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.61 5.71 37.16 0.21 -3.40 16 2 C -0.07 -0.93 0.77 -154.51 -0.12 -1.04 16 3 C -0.14 -1.79 8.17 37.16 0.30 -1.49 16 4 C -0.15 -1.79 7.68 37.16 0.29 -1.51 16 5 C -0.11 -1.45 3.74 -26.73 -0.10 -1.55 16 6 C 0.18 2.62 0.66 -131.82 -0.09 2.53 16 7 C -0.17 -2.30 6.60 37.16 0.25 -2.06 16 8 C -0.18 -2.54 8.14 37.16 0.30 -2.24 16 9 N -0.74 -13.82 3.08 -45.88 -0.14 -13.96 16 10 C 0.27 5.73 6.27 -83.66 -0.52 5.21 16 11 C -0.29 -5.48 7.39 -39.33 -0.29 -5.78 16 12 C -0.07 -1.32 10.00 -39.60 -0.40 -1.71 16 13 C -0.21 -4.28 10.07 -39.33 -0.40 -4.68 16 14 C 0.12 2.73 7.23 -83.91 -0.61 2.12 16 15 N -0.59 -13.21 5.99 -9.80 -0.06 -13.27 16 16 H 0.39 7.30 8.96 -40.82 -0.37 6.93 16 17 C -0.10 -2.67 10.88 -15.59 -0.17 -2.84 16 18 C 0.03 0.68 6.10 -104.81 -0.64 0.04 16 19 C -0.43 -11.01 9.03 -38.04 -0.34 -11.36 16 20 H 0.08 1.84 2.57 -52.49 -0.13 1.71 16 21 C 0.06 1.47 5.49 -17.34 -0.10 1.38 16 22 N -0.83 -21.56 10.35 55.54 0.57 -20.98 16 23 Si 0.90 19.27 29.56 -169.99 -5.02 14.24 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.19 -4.58 6.27 -104.75 -0.66 -5.24 16 28 H 0.07 1.31 5.31 -51.93 -0.28 1.04 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.13 2.41 3.91 -78.17 -0.31 2.10 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 6.05 -51.93 -0.31 0.50 16 35 H 0.04 0.51 7.67 -51.93 -0.40 0.12 16 36 H 0.06 0.66 5.32 -51.93 -0.28 0.38 16 37 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 39 H 0.06 0.84 5.63 -51.93 -0.29 0.55 16 40 H 0.06 0.65 6.04 -51.93 -0.31 0.34 16 41 H 0.07 1.04 5.22 -51.93 -0.27 0.77 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.28 4.33 -51.92 -0.22 1.06 16 45 H 0.42 8.40 1.96 -50.42 -0.10 8.30 16 46 H 0.13 2.04 2.87 -52.49 -0.15 1.89 16 47 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 48 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 49 H 0.19 4.92 5.70 -52.49 -0.30 4.62 16 50 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -27.51 351.22 -9.50 -37.00 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -7.06 Total: 25.28 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -3.08 Total: -33.61 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.37 Total: -48.21 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.51 -9.50 -37.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169051815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.475 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds