Wall clock time and date at job start Tue Mar 31 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47455 * 239.99968 * 2 1 3 5 5 C 1.53003 * 109.46946 * 119.99738 * 2 1 3 6 6 C 1.52993 * 109.47067 * 47.96254 * 5 2 1 7 7 C 1.52999 * 109.47243 * 61.24451 * 6 5 2 8 8 C 1.53004 * 109.46996 * 181.24231 * 6 5 2 9 9 N 1.46498 * 109.47307 * 301.24292 * 6 5 2 10 10 C 1.39409 * 120.00041 * 184.25645 * 9 6 5 11 11 C 1.38730 * 120.23142 * 359.61272 * 10 9 6 12 12 C 1.38440 * 120.15512 * 180.02562 * 11 10 9 13 13 C 1.37984 * 120.70938 * 359.97438 * 12 11 10 14 14 C 1.39158 * 120.13277 * 0.02994 * 13 12 11 15 15 N 1.38140 * 132.75069 * 179.97438 * 14 13 12 16 16 H 0.97002 * 124.69707 * 359.97438 * 15 14 13 17 17 C 1.35669 * 110.60289 * 179.21025 * 15 14 13 18 18 C 1.38958 * 109.24760 * 0.69221 * 17 15 14 19 19 C 1.40900 * 126.93760 * 179.45539 * 18 17 15 20 20 H 1.08000 * 120.00448 * 176.17374 * 19 18 17 21 21 C 1.39675 * 119.99723 * 356.17434 * 19 18 17 22 22 N 1.31080 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47298 * 120.00000 * 23 21 19 26 26 H 1.48505 * 109.46983 * 239.99697 * 23 21 19 27 27 C 1.39767 * 120.22683 * 179.33748 * 10 9 6 28 28 H 1.08993 * 109.47077 * 302.90321 * 1 2 3 29 29 H 1.08997 * 109.46646 * 62.90625 * 1 2 3 30 30 H 1.08998 * 109.46761 * 182.90143 * 1 2 3 31 31 H 1.08999 * 109.47336 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47037 * 299.99791 * 3 2 1 33 33 H 1.09004 * 109.47342 * 59.99491 * 3 2 1 34 34 H 1.08998 * 109.46791 * 344.00230 * 4 2 1 35 35 H 1.08994 * 109.47263 * 104.00246 * 4 2 1 36 36 H 1.09000 * 109.47182 * 224.00594 * 4 2 1 37 37 H 1.08997 * 109.47046 * 287.96028 * 5 2 1 38 38 H 1.08999 * 109.46887 * 167.96424 * 5 2 1 39 39 H 1.09002 * 109.47324 * 158.02584 * 7 6 5 40 40 H 1.08997 * 109.47266 * 38.02609 * 7 6 5 41 41 H 1.09001 * 109.47431 * 278.02507 * 7 6 5 42 42 H 1.08999 * 109.47184 * 304.71594 * 8 6 5 43 43 H 1.08998 * 109.47305 * 64.71647 * 8 6 5 44 44 H 1.09008 * 109.47028 * 184.71869 * 8 6 5 45 45 H 0.96999 * 120.00053 * 4.25576 * 9 6 5 46 46 H 1.07998 * 119.91649 * 0.02562 * 11 10 9 47 47 H 1.08009 * 119.64583 * 179.97438 * 12 11 10 48 48 H 1.08005 * 119.93651 * 180.02562 * 13 12 11 49 49 H 1.08002 * 125.37221 * 180.11976 * 17 15 14 50 50 H 0.97002 * 119.99629 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.2993 -2.0504 1.4089 7 6 1.5738 -2.9365 0.1922 8 6 1.7872 -2.7572 2.6751 9 7 -0.1399 -1.7978 1.5144 10 6 -1.0171 -2.8541 1.7561 11 6 -0.5331 -4.1473 1.8897 12 6 -1.4056 -5.1951 2.1293 13 6 -2.7627 -4.9710 2.2389 14 6 -3.2707 -3.6820 2.1084 15 7 -4.5516 -3.1684 2.1684 16 1 -5.3509 -3.6950 2.3259 17 6 -4.5353 -1.8232 1.9931 18 6 -3.2258 -1.4031 1.7937 19 6 -2.7852 -0.0846 1.5640 20 1 -1.7289 0.1257 1.4843 21 6 -3.7147 0.9505 1.4394 22 7 -4.9968 0.6953 1.5357 23 14 -3.1307 2.6985 1.1341 24 1 -1.6474 2.7198 1.0648 25 1 -3.6928 3.1913 -0.1489 26 1 -3.5876 3.5738 2.2433 27 6 -2.3896 -2.6166 1.8714 28 1 -0.3633 0.5582 0.8628 29 1 -0.3632 0.4680 -0.9149 30 1 -0.3633 -1.0264 0.0520 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.2298 -1.3024 -1.6894 35 1 2.3956 0.0124 -1.9726 36 1 2.8581 -1.3876 -0.9755 37 1 1.8623 -0.0987 2.1262 38 1 3.1087 -0.9106 1.1487 39 1 1.3956 -3.9793 0.4546 40 1 2.6104 -2.8127 -0.1209 41 1 0.9109 -2.6488 -0.6238 42 1 2.8705 -2.8702 2.6337 43 1 1.5168 -2.1647 3.5491 44 1 1.3218 -3.7405 2.7446 45 1 -0.4825 -0.8957 1.4159 46 1 0.5268 -4.3370 1.8066 47 1 -1.0199 -6.1988 2.2315 48 1 -3.4321 -5.7976 2.4264 49 1 -5.4040 -1.1815 1.9978 50 1 -5.6422 1.4143 1.4495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169051815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:02 Heat of formation + Delta-G solvation = 95.643801 kcal Electronic energy + Delta-G solvation = -28506.607903 eV Core-core repulsion = 25114.698845 eV Total energy + Delta-G solvation = -3391.909059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80800 -40.62124 -37.62258 -35.82237 -35.15858 -33.58078 -31.07195 -30.05492 -29.34991 -29.17140 -27.54674 -27.31550 -26.89716 -26.29392 -22.88584 -22.35215 -21.34552 -20.49019 -20.03040 -18.76351 -17.68645 -17.27764 -16.51648 -16.40190 -16.13328 -15.60218 -15.49869 -15.16663 -14.88773 -14.75405 -14.42029 -14.31186 -14.08086 -13.71707 -13.40006 -13.26611 -13.17443 -12.99716 -12.95366 -12.78980 -12.71645 -12.61307 -12.41694 -12.22585 -12.18287 -12.01909 -11.74553 -11.55760 -11.41644 -11.37377 -11.26291 -11.13250 -11.05128 -10.69949 -10.31628 -9.09136 -8.56599 -8.34435 -7.53612 -5.87851 0.93715 1.20456 1.37008 1.38469 1.48378 2.27400 2.39521 2.86289 3.07191 3.31621 3.74175 3.79362 3.87448 3.98370 4.17490 4.33288 4.43667 4.44611 4.58771 4.67044 4.72633 4.74796 4.75720 4.79629 4.89497 4.92333 4.95878 4.98954 5.03763 5.08321 5.12139 5.13729 5.17121 5.21996 5.31963 5.36955 5.39349 5.45370 5.48464 5.56032 5.59003 5.64660 5.69137 5.81207 5.97973 6.07823 6.14476 6.22834 6.64347 6.88579 7.01992 7.17633 7.24809 7.35902 7.54936 8.64388 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009381 B = 0.008064 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.980965 B = 3471.312501 C = 6003.219726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.107 4.107 6 C 0.169 3.831 7 C -0.166 4.166 8 C -0.178 4.178 9 N -0.744 5.744 10 C 0.261 3.739 11 C -0.286 4.286 12 C -0.059 4.059 13 C -0.229 4.229 14 C 0.108 3.892 15 N -0.589 5.589 16 H 0.405 0.595 17 C -0.130 4.130 18 C -0.007 4.007 19 C -0.449 4.449 20 H 0.088 0.912 21 C 0.013 3.987 22 N -0.860 5.860 23 Si 0.961 3.039 24 H -0.253 1.253 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.230 4.230 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.081 0.919 45 H 0.417 0.583 46 H 0.156 0.844 47 H 0.142 0.858 48 H 0.116 0.884 49 H 0.172 0.828 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 -4.274 -2.299 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.144 4.144 6 C 0.083 3.917 7 C -0.223 4.223 8 C -0.236 4.236 9 N -0.387 5.387 10 C 0.155 3.845 11 C -0.311 4.311 12 C -0.079 4.079 13 C -0.253 4.253 14 C -0.004 4.004 15 N -0.192 5.192 16 H 0.240 0.760 17 C -0.254 4.254 18 C -0.013 4.013 19 C -0.482 4.482 20 H 0.105 0.895 21 C -0.194 4.194 22 N -0.492 5.492 23 Si 0.785 3.215 24 H -0.176 1.176 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.240 4.240 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.269 0.731 46 H 0.172 0.828 47 H 0.159 0.841 48 H 0.134 0.866 49 H 0.189 0.811 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.818 -4.064 -2.324 15.540 hybrid contribution -1.505 1.276 0.119 1.977 sum 13.313 -2.788 -2.205 13.779 Atomic orbital electron populations 1.23536 0.96852 1.05601 0.99981 1.20520 0.93873 0.95880 0.96164 1.21949 1.01729 0.94927 1.01148 1.22297 1.01281 1.00319 0.96081 1.22015 1.00869 0.94365 0.97161 1.20397 0.79929 0.95733 0.95656 1.22757 1.02620 0.99694 0.97273 1.22645 1.02351 1.02152 0.96411 1.47284 1.05251 1.09512 1.76635 1.17497 0.87039 0.89520 0.90414 1.21032 1.00797 0.90510 1.18717 1.20693 0.91512 0.98855 0.96856 1.19859 0.96408 0.92411 1.16586 1.18433 0.84860 0.94512 1.02631 1.41396 1.05803 1.07520 1.64475 0.75956 1.23026 1.00307 0.81825 1.20274 1.18387 0.90639 0.91578 1.00655 1.19333 0.94643 0.91156 1.43053 0.89467 1.26353 0.94623 1.03873 0.94548 1.69619 1.02392 1.34086 1.43099 0.85425 0.79855 0.78121 0.78128 1.17626 1.20049 1.20092 1.19270 0.92684 0.94774 1.17282 0.93839 0.94253 0.87251 0.90575 0.92976 0.94039 0.93382 0.92521 0.89949 0.92812 0.87636 0.92066 0.89269 0.92833 0.89566 0.94211 0.90097 0.73133 0.82755 0.84075 0.86585 0.81144 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.08 5.71 71.98 0.41 -6.66 16 2 C -0.06 -1.64 0.77 -52.18 -0.04 -1.68 16 3 C -0.14 -3.25 8.17 71.98 0.59 -2.66 16 4 C -0.14 -3.06 7.68 71.98 0.55 -2.51 16 5 C -0.11 -2.52 3.74 30.59 0.11 -2.41 16 6 C 0.17 4.56 0.66 3.60 0.00 4.57 16 7 C -0.17 -3.92 6.60 71.98 0.47 -3.45 16 8 C -0.18 -4.40 8.14 71.98 0.59 -3.81 16 9 N -0.74 -27.66 3.08 -299.08 -0.92 -28.58 16 10 C 0.26 11.04 6.27 38.42 0.24 11.28 16 11 C -0.29 -10.16 7.39 22.44 0.17 -9.99 16 12 C -0.06 -2.04 10.00 22.26 0.22 -1.81 16 13 C -0.23 -8.91 10.07 22.43 0.23 -8.68 16 14 C 0.11 5.06 7.23 38.87 0.28 5.34 16 15 N -0.59 -27.59 5.99 -184.91 -1.11 -28.70 16 16 H 0.41 15.80 8.96 -92.71 -0.83 14.97 16 17 C -0.13 -7.10 10.88 84.27 0.92 -6.19 16 18 C -0.01 -0.39 6.10 -19.99 -0.12 -0.51 16 19 C -0.45 -24.43 9.03 23.27 0.21 -24.22 16 20 H 0.09 4.42 2.57 -2.91 -0.01 4.41 16 21 C 0.01 0.67 5.49 85.15 0.47 1.14 16 22 N -0.86 -47.06 10.35 21.79 0.23 -46.84 16 23 Si 0.96 40.95 29.56 68.60 2.03 42.98 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 27 C -0.23 -11.60 6.27 -19.95 -0.13 -11.72 16 28 H 0.04 1.72 5.31 -2.39 -0.01 1.71 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 4.26 3.91 -54.20 -0.21 4.05 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.17 6.05 -2.39 -0.01 1.16 16 35 H 0.06 1.09 7.67 -2.39 -0.02 1.07 16 36 H 0.08 1.39 5.32 -2.39 -0.01 1.38 16 37 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.11 1.82 7.81 -2.39 -0.02 1.80 16 39 H 0.06 1.44 5.63 -2.39 -0.01 1.42 16 40 H 0.09 1.54 6.04 -2.39 -0.01 1.53 16 41 H 0.05 1.47 5.22 -2.39 -0.01 1.46 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 2.08 4.33 -2.38 -0.01 2.07 16 45 H 0.42 16.93 1.96 -101.73 -0.20 16.73 16 46 H 0.16 4.49 2.87 -2.91 -0.01 4.49 16 47 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 48 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 49 H 0.17 9.74 5.70 -2.91 -0.02 9.72 16 50 H 0.27 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -63.90 351.22 5.16 -58.74 By element: Atomic # 1 Polarization: 66.63 SS G_CDS: -0.23 Total: 66.39 kcal Atomic # 6 Polarization: -69.16 SS G_CDS: 5.17 Total: -63.99 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -1.80 Total: -104.12 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -63.90 5.16 -58.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169051815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.382 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds