Wall clock time and date at job start Tue Mar 31 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46983 * 2 1 4 4 C 1.52995 * 109.47376 * 120.00250 * 2 1 3 5 5 C 1.53000 * 109.47212 * 174.75264 * 4 2 1 6 6 H 1.08992 * 109.47224 * 54.08778 * 5 4 2 7 7 C 1.53006 * 109.46723 * 294.08888 * 5 4 2 8 8 C 1.50708 * 109.46931 * 175.00044 * 7 5 4 9 9 C 1.38236 * 119.99716 * 269.72897 * 8 7 5 10 10 C 1.38237 * 119.99642 * 180.32599 * 9 8 7 11 11 C 1.38238 * 119.99953 * 359.94708 * 10 9 8 12 12 C 1.38231 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.38235 * 120.00256 * 0.02562 * 12 11 10 14 14 N 1.46899 * 109.47169 * 174.09446 * 5 4 2 15 15 C 1.46902 * 110.99583 * 288.34151 * 14 5 4 16 16 C 1.50702 * 109.47150 * 292.76673 * 15 14 5 17 17 H 1.07995 * 120.00289 * 4.75253 * 16 15 14 18 18 C 1.37875 * 119.99669 * 184.74321 * 16 15 14 19 19 N 1.31522 * 119.99852 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47536 * 89.99475 * 20 18 16 22 22 H 1.48506 * 109.47281 * 209.99503 * 20 18 16 23 23 H 1.48501 * 109.47402 * 329.99421 * 20 18 16 24 24 C 1.46891 * 111.00363 * 52.29415 * 14 5 4 25 25 C 1.53000 * 109.47294 * 163.97240 * 24 14 5 26 26 C 1.47205 * 109.47427 * 185.29684 * 25 24 14 27 27 N 7.30302 * 101.96768 * 143.26416 * 2 1 3 28 28 H 1.09003 * 109.47105 * 299.99849 * 1 2 3 29 29 H 1.09002 * 109.47158 * 59.99896 * 1 2 3 30 30 H 1.09003 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46822 * 240.00615 * 2 1 3 32 32 H 1.09003 * 109.47286 * 305.51113 * 3 2 1 33 33 H 1.08995 * 109.46697 * 65.51201 * 3 2 1 34 34 H 1.08997 * 109.46700 * 185.50918 * 3 2 1 35 35 H 1.09000 * 109.47031 * 54.74697 * 4 2 1 36 36 H 1.09004 * 109.47197 * 294.74806 * 4 2 1 37 37 H 1.09000 * 109.47211 * 55.00179 * 7 5 4 38 38 H 1.08995 * 109.46991 * 295.00067 * 7 5 4 39 39 H 1.07996 * 120.00153 * 0.27165 * 9 8 7 40 40 H 1.07999 * 119.99825 * 179.97438 * 10 9 8 41 41 H 1.07998 * 120.00193 * 180.02562 * 11 10 9 42 42 H 1.08005 * 120.00184 * 179.97438 * 12 11 10 43 43 H 1.08002 * 120.00350 * 179.97438 * 13 12 11 44 44 H 1.08998 * 109.47110 * 52.76973 * 15 14 5 45 45 H 1.08998 * 109.47263 * 172.76826 * 15 14 5 46 46 H 0.96997 * 119.99944 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.47401 * 283.97237 * 24 14 5 48 48 H 1.09003 * 109.47021 * 43.97121 * 24 14 5 49 49 H 1.08999 * 109.47157 * 305.29420 * 25 24 14 50 50 H 1.08999 * 109.47284 * 65.29485 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5644 -0.8365 1.1849 6 1 3.9973 0.1519 1.0312 7 6 3.9580 -1.7520 0.0238 8 6 5.4585 -1.7683 -0.1165 9 6 6.0859 -0.8505 -0.9380 10 6 7.4616 -0.8699 -1.0719 11 6 8.2099 -1.8063 -0.3834 12 6 7.5826 -2.7237 0.4385 13 6 6.2068 -2.7051 0.5716 14 7 4.0664 -1.4005 2.4450 15 6 3.9538 -0.4268 3.5392 16 6 4.8970 0.7215 3.2889 17 1 5.4613 0.7662 2.3691 18 6 5.0394 1.7152 4.2340 19 7 5.8629 2.7172 4.0157 20 14 4.0637 1.6378 5.8250 21 1 4.8435 0.8962 6.8483 22 1 3.7963 3.0160 6.3092 23 1 2.7756 0.9398 5.5823 24 6 3.3684 -2.6494 2.7778 25 6 4.1605 -3.4076 3.8449 26 6 3.5305 -4.7159 4.0867 27 7 3.0444 -5.7254 4.2732 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.5983 1.9841 -0.8365 33 1 1.7595 1.9270 0.9352 34 1 3.1255 1.4441 -0.0987 35 1 1.6020 -1.7182 1.2974 36 1 1.7556 -0.1560 2.1367 37 1 3.5109 -1.3816 -0.8987 38 1 3.6005 -2.7626 0.2207 39 1 5.5012 -0.1190 -1.4759 40 1 7.9517 -0.1531 -1.7141 41 1 9.2848 -1.8212 -0.4877 42 1 8.1672 -3.4556 0.9761 43 1 5.7166 -3.4221 1.2135 44 1 2.9312 -0.0529 3.5890 45 1 4.2107 -0.9089 4.4824 46 1 5.9628 3.4165 4.6804 47 1 2.3735 -2.4193 3.1590 48 1 3.2811 -3.2663 1.8834 49 1 5.1842 -3.5554 3.5010 50 1 4.1677 -2.8313 4.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169086848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:09 Heat of formation + Delta-G solvation = 36.246878 kcal Electronic energy + Delta-G solvation = -27414.157755 eV Core-core repulsion = 24019.673053 eV Total energy + Delta-G solvation = -3394.484702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.48343 -38.08912 -36.64685 -35.33709 -32.90898 -32.53440 -30.97497 -30.40305 -29.09676 -27.07423 -26.68578 -25.87981 -23.36419 -22.33847 -22.06577 -20.80867 -20.17522 -18.47981 -17.43278 -16.81749 -16.32097 -15.61442 -15.23975 -14.95181 -14.49065 -14.35287 -14.31072 -14.15255 -13.77102 -13.44985 -13.14651 -12.97359 -12.92926 -12.60791 -12.48247 -12.39794 -12.19509 -12.12745 -12.01300 -11.70787 -11.56461 -11.44254 -11.15643 -10.97422 -10.94609 -10.68009 -10.62449 -10.54165 -10.39452 -10.21581 -10.13118 -9.89708 -9.85520 -9.23268 -8.57327 -8.42234 -8.14638 -7.41766 -6.05683 -4.02212 1.86073 1.91091 2.84866 2.90085 3.24894 3.33044 3.34714 4.05097 4.26555 4.39565 4.75745 5.01689 5.10814 5.17468 5.21357 5.26929 5.29002 5.31767 5.38952 5.42647 5.52502 5.57904 5.65857 5.76365 5.80589 5.82859 5.89211 5.92935 5.97435 6.03577 6.05784 6.09220 6.13709 6.19221 6.22833 6.32286 6.40008 6.48934 6.51551 6.52851 6.66280 6.71889 6.91221 6.93739 6.96473 6.98703 7.14997 7.49640 7.55803 7.65697 7.84893 7.96291 8.62687 9.05473 9.56072 11.07307 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.007006 B = 0.005817 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.737090 B = 4812.517676 C = 4974.043383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.097 3.903 6 H 0.107 0.893 7 C -0.078 4.078 8 C -0.053 4.053 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.123 4.123 13 C -0.090 4.090 14 N -0.511 5.511 15 C 0.158 3.842 16 C -0.501 4.501 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.867 3.133 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.051 3.949 25 C -0.030 4.030 26 C 0.218 3.782 27 N -0.457 5.457 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.116 0.884 44 H -0.008 1.008 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.036 0.964 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 -7.337 -9.283 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.186 4.186 5 C -0.011 4.011 6 H 0.125 0.875 7 C -0.116 4.116 8 C -0.053 4.053 9 C -0.136 4.136 10 C -0.139 4.139 11 C -0.149 4.149 12 C -0.141 4.141 13 C -0.108 4.108 14 N -0.233 5.233 15 C 0.032 3.968 16 C -0.540 4.540 17 H 0.100 0.900 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.694 3.306 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.079 4.079 25 C -0.070 4.070 26 C -0.100 4.100 27 N -0.134 5.134 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.010 0.990 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.092 0.908 49 H 0.136 0.864 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.691 -8.783 -8.964 13.081 hybrid contribution -1.047 0.833 1.243 1.826 sum -4.738 -7.950 -7.721 12.053 Atomic orbital electron populations 1.21848 0.96071 1.01034 1.01366 1.21100 0.94878 0.96833 0.98322 1.21863 1.01777 0.95399 1.01419 1.22358 0.97880 0.99867 0.98474 1.21714 0.91386 0.99496 0.88548 0.87473 1.20837 0.91831 1.00232 0.98667 1.19625 0.95338 0.94884 0.95455 1.20944 0.94571 0.98534 0.99525 1.20986 0.94146 0.98621 1.00196 1.20977 0.99165 0.96444 0.98289 1.21029 0.94901 0.99218 0.98918 1.20859 0.93407 0.98673 0.97888 1.62127 1.53616 1.03728 1.03833 1.20263 0.95939 0.91215 0.89369 1.20962 1.23576 1.03657 1.05758 0.89958 1.24857 0.94990 0.95434 0.97779 1.69888 1.36728 1.11711 1.35387 0.87007 0.81166 0.77470 0.84930 1.20243 1.21409 1.19330 1.22001 0.95133 0.93710 0.97011 1.19422 1.00298 0.84779 1.02544 1.29450 0.93105 0.94799 0.92606 1.81173 1.09988 1.12637 1.09632 0.92904 0.93174 0.93259 0.91386 0.93614 0.92435 0.91822 0.92718 0.91148 0.91093 0.91642 0.86831 0.86933 0.87077 0.86931 0.86587 0.99025 0.95718 0.92784 0.94600 0.90811 0.86412 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 2 C -0.09 -1.14 2.80 -90.62 -0.25 -1.40 16 3 C -0.15 -2.02 8.82 37.16 0.33 -1.69 16 4 C -0.15 -2.05 3.32 -26.73 -0.09 -2.14 16 5 C 0.10 1.49 1.50 -67.71 -0.10 1.39 16 6 H 0.11 2.02 4.92 -51.93 -0.26 1.76 16 7 C -0.08 -1.03 4.67 -27.88 -0.13 -1.16 16 8 C -0.05 -0.78 4.95 -104.62 -0.52 -1.29 16 9 C -0.12 -1.74 9.70 -39.58 -0.38 -2.12 16 10 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 11 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 12 C -0.12 -1.72 10.05 -39.59 -0.40 -2.12 16 13 C -0.09 -1.30 9.31 -39.58 -0.37 -1.67 16 14 N -0.51 -8.44 3.76 -228.09 -0.86 -9.30 16 15 C 0.16 3.25 3.53 -4.97 -0.02 3.23 16 16 C -0.50 -12.74 9.01 -34.44 -0.31 -13.05 16 17 H 0.08 2.33 7.35 -52.49 -0.39 1.95 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -26.13 13.96 55.43 0.77 -25.36 16 20 Si 0.87 20.21 27.38 -169.99 -4.65 15.55 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -5.98 6.68 56.52 0.38 -5.60 16 24 C 0.05 0.69 3.62 -3.83 -0.01 0.68 16 25 C -0.03 -0.37 5.66 -29.52 -0.17 -0.53 16 26 C 0.22 2.92 15.43 -20.76 -0.32 2.60 16 27 N -0.46 -7.16 18.54 42.15 0.78 -6.38 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.78 6.28 -51.93 -0.33 0.45 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 35 H 0.05 0.70 7.04 -51.93 -0.37 0.34 16 36 H 0.07 1.14 6.44 -51.93 -0.33 0.81 16 37 H 0.07 0.84 6.22 -51.93 -0.32 0.52 16 38 H 0.07 0.79 6.12 -51.93 -0.32 0.47 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.51 7.88 -52.49 -0.41 1.10 16 44 H -0.01 -0.17 5.75 -51.93 -0.30 -0.46 16 45 H 0.02 0.51 5.64 -51.93 -0.29 0.21 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.04 0.49 7.27 -51.93 -0.38 0.12 16 48 H 0.07 0.89 5.96 -51.93 -0.31 0.58 16 49 H 0.12 1.33 7.96 -51.93 -0.41 0.92 16 50 H 0.11 1.37 6.79 -51.93 -0.35 1.02 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -29.15 391.25 -9.43 -38.58 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.08 Total: 4.10 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.30 Total: -23.10 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.70 Total: -41.04 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.65 Total: 15.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.15 -9.43 -38.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169086848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.829 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds