Wall clock time and date at job start Tue Mar 31 2020 11:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46983 * 2 1 4 4 C 1.52995 * 109.47376 * 120.00250 * 2 1 3 5 5 C 1.53000 * 109.47212 * 174.75264 * 4 2 1 6 6 H 1.08992 * 109.47224 * 54.08778 * 5 4 2 7 7 C 1.53006 * 109.46723 * 294.08888 * 5 4 2 8 8 C 1.50708 * 109.46931 * 175.00044 * 7 5 4 9 9 C 1.38236 * 119.99716 * 269.72897 * 8 7 5 10 10 C 1.38237 * 119.99642 * 180.32599 * 9 8 7 11 11 C 1.38238 * 119.99953 * 359.94708 * 10 9 8 12 12 C 1.38231 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.38235 * 120.00256 * 0.02562 * 12 11 10 14 14 N 1.46899 * 109.47169 * 174.09446 * 5 4 2 15 15 C 1.46902 * 110.99583 * 288.34151 * 14 5 4 16 16 C 1.50702 * 109.47150 * 292.76673 * 15 14 5 17 17 H 1.07995 * 120.00289 * 4.75253 * 16 15 14 18 18 C 1.37875 * 119.99669 * 184.74321 * 16 15 14 19 19 N 1.31522 * 119.99852 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47536 * 89.99475 * 20 18 16 22 22 H 1.48506 * 109.47281 * 209.99503 * 20 18 16 23 23 H 1.48501 * 109.47402 * 329.99421 * 20 18 16 24 24 C 1.46891 * 111.00363 * 52.29415 * 14 5 4 25 25 C 1.53000 * 109.47294 * 163.97240 * 24 14 5 26 26 C 1.47205 * 109.47427 * 185.29684 * 25 24 14 27 27 N 7.30302 * 101.96768 * 143.26416 * 2 1 3 28 28 H 1.09003 * 109.47105 * 299.99849 * 1 2 3 29 29 H 1.09002 * 109.47158 * 59.99896 * 1 2 3 30 30 H 1.09003 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46822 * 240.00615 * 2 1 3 32 32 H 1.09003 * 109.47286 * 305.51113 * 3 2 1 33 33 H 1.08995 * 109.46697 * 65.51201 * 3 2 1 34 34 H 1.08997 * 109.46700 * 185.50918 * 3 2 1 35 35 H 1.09000 * 109.47031 * 54.74697 * 4 2 1 36 36 H 1.09004 * 109.47197 * 294.74806 * 4 2 1 37 37 H 1.09000 * 109.47211 * 55.00179 * 7 5 4 38 38 H 1.08995 * 109.46991 * 295.00067 * 7 5 4 39 39 H 1.07996 * 120.00153 * 0.27165 * 9 8 7 40 40 H 1.07999 * 119.99825 * 179.97438 * 10 9 8 41 41 H 1.07998 * 120.00193 * 180.02562 * 11 10 9 42 42 H 1.08005 * 120.00184 * 179.97438 * 12 11 10 43 43 H 1.08002 * 120.00350 * 179.97438 * 13 12 11 44 44 H 1.08998 * 109.47110 * 52.76973 * 15 14 5 45 45 H 1.08998 * 109.47263 * 172.76826 * 15 14 5 46 46 H 0.96997 * 119.99944 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.47401 * 283.97237 * 24 14 5 48 48 H 1.09003 * 109.47021 * 43.97121 * 24 14 5 49 49 H 1.08999 * 109.47157 * 305.29420 * 25 24 14 50 50 H 1.08999 * 109.47284 * 65.29485 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5644 -0.8365 1.1849 6 1 3.9973 0.1519 1.0312 7 6 3.9580 -1.7520 0.0238 8 6 5.4585 -1.7683 -0.1165 9 6 6.0859 -0.8505 -0.9380 10 6 7.4616 -0.8699 -1.0719 11 6 8.2099 -1.8063 -0.3834 12 6 7.5826 -2.7237 0.4385 13 6 6.2068 -2.7051 0.5716 14 7 4.0664 -1.4005 2.4450 15 6 3.9538 -0.4268 3.5392 16 6 4.8970 0.7215 3.2889 17 1 5.4613 0.7662 2.3691 18 6 5.0394 1.7152 4.2340 19 7 5.8629 2.7172 4.0157 20 14 4.0637 1.6378 5.8250 21 1 4.8435 0.8962 6.8483 22 1 3.7963 3.0160 6.3092 23 1 2.7756 0.9398 5.5823 24 6 3.3684 -2.6494 2.7778 25 6 4.1605 -3.4076 3.8449 26 6 3.5305 -4.7159 4.0867 27 7 3.0444 -5.7254 4.2732 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.5983 1.9841 -0.8365 33 1 1.7595 1.9270 0.9352 34 1 3.1255 1.4441 -0.0987 35 1 1.6020 -1.7182 1.2974 36 1 1.7556 -0.1560 2.1367 37 1 3.5109 -1.3816 -0.8987 38 1 3.6005 -2.7626 0.2207 39 1 5.5012 -0.1190 -1.4759 40 1 7.9517 -0.1531 -1.7141 41 1 9.2848 -1.8212 -0.4877 42 1 8.1672 -3.4556 0.9761 43 1 5.7166 -3.4221 1.2135 44 1 2.9312 -0.0529 3.5890 45 1 4.2107 -0.9089 4.4824 46 1 5.9628 3.4165 4.6804 47 1 2.3735 -2.4193 3.1590 48 1 3.2811 -3.2663 1.8834 49 1 5.1842 -3.5554 3.5010 50 1 4.1677 -2.8313 4.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169086848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:08 Heat of formation + Delta-G solvation = 22.507034 kcal Electronic energy + Delta-G solvation = -27414.753560 eV Core-core repulsion = 24019.673053 eV Total energy + Delta-G solvation = -3395.080507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65638 -39.23298 -37.75316 -36.50889 -34.65703 -33.81789 -32.24005 -31.49130 -30.50940 -28.38006 -27.90880 -26.97282 -24.64584 -23.83693 -23.18539 -21.98094 -21.33625 -19.75394 -18.72295 -18.44858 -17.47503 -16.93737 -16.36714 -16.08805 -15.89788 -15.58533 -15.55103 -15.42510 -15.01212 -14.58039 -14.51545 -14.15899 -14.13418 -13.99229 -13.81919 -13.54847 -13.43862 -13.26552 -13.06256 -12.97599 -12.74400 -12.61320 -12.51521 -12.35662 -12.25356 -12.00923 -11.84628 -11.70731 -11.64156 -11.51615 -11.41651 -11.30775 -11.08809 -10.99014 -10.62061 -9.53473 -9.26427 -8.75821 -8.13860 -6.12931 0.75072 0.79910 1.39904 1.42573 1.50204 1.78349 1.84955 2.43184 2.92831 3.14947 3.21309 3.56922 3.93237 4.03897 4.14159 4.19202 4.20751 4.26861 4.31476 4.39029 4.45571 4.50594 4.59227 4.67824 4.70677 4.80201 4.84970 4.87468 4.88290 4.95991 4.98150 5.01322 5.08395 5.12162 5.17342 5.20815 5.22235 5.27785 5.36005 5.42822 5.44269 5.50027 5.62583 5.66153 5.72667 5.82888 5.86460 6.02511 6.17329 6.41851 6.53800 6.62942 6.82135 6.95780 7.48987 9.02775 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.007006 B = 0.005817 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.737090 B = 4812.517676 C = 4974.043383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.140 4.140 5 C 0.102 3.898 6 H 0.065 0.935 7 C -0.069 4.069 8 C -0.066 4.066 9 C -0.138 4.138 10 C -0.138 4.138 11 C -0.143 4.143 12 C -0.133 4.133 13 C -0.101 4.101 14 N -0.516 5.516 15 C 0.167 3.833 16 C -0.487 4.487 17 H 0.039 0.961 18 C 0.009 3.991 19 N -0.952 5.952 20 Si 0.930 3.070 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.248 1.248 24 C 0.052 3.948 25 C -0.023 4.023 26 C 0.245 3.755 27 N -0.494 5.494 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.132 0.868 44 H -0.011 1.011 45 H 0.037 0.963 46 H 0.260 0.740 47 H 0.039 0.961 48 H 0.095 0.905 49 H 0.132 0.868 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -9.583 -9.259 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.179 4.179 5 C -0.007 4.007 6 H 0.083 0.917 7 C -0.106 4.106 8 C -0.066 4.066 9 C -0.156 4.156 10 C -0.156 4.156 11 C -0.161 4.161 12 C -0.151 4.151 13 C -0.119 4.119 14 N -0.238 5.238 15 C 0.040 3.960 16 C -0.526 4.526 17 H 0.058 0.942 18 C -0.187 4.187 19 N -0.594 5.594 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.172 1.172 24 C -0.078 4.078 25 C -0.064 4.064 26 C -0.072 4.072 27 N -0.173 5.173 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.006 0.994 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.150 0.850 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.179 -11.061 -8.952 15.143 hybrid contribution -0.512 1.566 1.120 1.992 sum -5.691 -9.495 -7.832 13.561 Atomic orbital electron populations 1.21811 0.94596 1.01987 1.01551 1.21090 0.96028 0.95444 0.98154 1.21831 1.00554 0.96923 1.00907 1.22271 0.96715 1.00713 0.98162 1.21567 0.92142 0.98068 0.88900 0.91693 1.20783 0.91081 1.00616 0.98097 1.19859 0.96254 0.94992 0.95531 1.21187 0.95119 0.99049 1.00214 1.21276 0.94345 0.99229 1.00720 1.21298 1.00283 0.96335 0.98172 1.21370 0.95244 0.99578 0.98895 1.21122 0.93763 0.98941 0.98032 1.61984 1.54967 1.03897 1.02950 1.20009 0.94077 0.90620 0.91271 1.21192 1.22840 1.04975 1.03575 0.94227 1.25681 0.96250 0.95204 1.01566 1.70063 1.39453 1.13053 1.36821 0.85981 0.80587 0.77247 0.80704 1.19172 1.22245 1.17153 1.22070 0.95040 0.92242 0.98415 1.19413 1.00672 0.83969 1.02296 1.29425 0.92007 0.94356 0.91420 1.81217 1.11275 1.13864 1.10915 0.93849 0.91938 0.91889 0.89754 0.91832 0.94703 0.93930 0.90659 0.93704 0.89749 0.89673 0.86450 0.85722 0.85285 0.84921 0.85061 0.99363 0.94553 0.93122 0.94266 0.88718 0.85023 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 2 C -0.09 -2.04 2.80 -10.79 -0.03 -2.07 16 3 C -0.14 -4.02 8.82 71.98 0.64 -3.38 16 4 C -0.14 -3.68 3.32 30.59 0.10 -3.58 16 5 C 0.10 3.06 1.50 44.92 0.07 3.13 16 6 H 0.06 2.55 4.92 -2.39 -0.01 2.53 16 7 C -0.07 -1.67 4.67 29.85 0.14 -1.54 16 8 C -0.07 -1.89 4.95 -19.86 -0.10 -1.98 16 9 C -0.14 -4.11 9.70 22.27 0.22 -3.89 16 10 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 11 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 12 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 13 C -0.10 -2.74 9.31 22.27 0.21 -2.53 16 14 N -0.52 -16.30 3.76 -875.53 -3.29 -19.59 16 15 C 0.17 6.73 3.53 85.56 0.30 7.03 16 16 C -0.49 -25.39 9.01 25.60 0.23 -25.16 16 17 H 0.04 2.37 7.35 -2.91 -0.02 2.34 16 18 C 0.01 0.51 5.47 84.65 0.46 0.97 16 19 N -0.95 -57.62 13.96 21.45 0.30 -57.32 16 20 Si 0.93 41.72 27.38 68.60 1.88 43.60 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.25 -10.19 6.68 99.48 0.66 -9.53 16 24 C 0.05 1.23 3.62 86.31 0.31 1.54 16 25 C -0.02 -0.49 5.66 28.79 0.16 -0.33 16 26 C 0.24 5.81 15.43 89.44 1.38 7.19 16 27 N -0.49 -14.32 18.54 20.01 0.37 -13.95 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.71 6.28 -2.39 -0.01 1.69 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.34 6.72 -2.39 -0.02 1.32 16 35 H 0.07 1.68 7.04 -2.39 -0.02 1.67 16 36 H 0.04 1.42 6.44 -2.39 -0.02 1.40 16 37 H 0.08 1.83 6.22 -2.39 -0.01 1.82 16 38 H 0.08 1.75 6.12 -2.39 -0.01 1.73 16 39 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 40 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.13 3.05 7.88 -2.91 -0.02 3.03 16 44 H -0.01 -0.46 5.75 -2.39 -0.01 -0.48 16 45 H 0.04 1.40 5.64 -2.39 -0.01 1.39 16 46 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.04 0.94 7.27 -2.39 -0.02 0.92 16 48 H 0.09 1.89 5.96 -2.39 -0.01 1.88 16 49 H 0.13 2.51 7.96 -2.39 -0.02 2.49 16 50 H 0.11 2.42 6.79 -2.39 -0.02 2.41 16 Total: -1.00 -65.49 391.25 5.55 -59.94 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.87 Total: 24.87 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 5.42 Total: -37.55 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -2.62 Total: -90.86 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Total: -65.49 5.55 -59.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169086848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.448 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds