Wall clock time and date at job start Tue Mar 31 2020 11:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37972 * 119.72653 * 2 1 4 4 C 1.38221 * 119.77614 * 180.02562 * 3 2 1 5 5 C 1.37984 * 119.76429 * 359.87413 * 4 3 2 6 6 C 1.38860 * 120.54539 * 359.97438 * 5 4 3 7 7 C 1.37706 * 119.69038 * 0.24442 * 6 5 4 8 8 C 1.50625 * 122.56280 * 179.60974 * 7 6 5 9 9 C 1.52723 * 110.59771 * 17.71953 * 8 7 6 10 10 C 1.53322 * 108.40151 * 308.94380 * 9 8 7 11 11 H 1.09006 * 109.68252 * 310.11715 * 10 9 8 12 12 N 1.46899 * 109.68642 * 189.60314 * 10 9 8 13 13 C 1.46956 * 111.00293 * 175.51962 * 12 10 9 14 14 C 1.53056 * 109.38342 * 183.17592 * 13 12 10 15 15 N 1.46963 * 109.35944 * 301.62902 * 14 13 12 16 16 C 1.46903 * 110.99595 * 183.16796 * 15 14 13 17 17 C 1.50697 * 109.46882 * 66.17766 * 16 15 14 18 18 H 1.08001 * 120.00544 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31526 * 119.99817 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47426 * 59.99703 * 21 19 17 23 23 H 1.48502 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46936 * 299.99681 * 21 19 17 25 25 C 1.46956 * 110.89784 * 59.28921 * 15 14 13 26 26 C 1.46962 * 110.99604 * 299.31774 * 12 10 9 27 27 C 1.50649 * 117.73894 * 180.51845 * 6 5 4 28 28 H 1.08997 * 109.47333 * 269.98863 * 1 2 3 29 29 H 1.09002 * 109.47237 * 29.98951 * 1 2 3 30 30 H 1.08997 * 109.47223 * 149.98872 * 1 2 3 31 31 H 1.07999 * 120.11768 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.12061 * 179.84534 * 4 3 2 33 33 H 1.08003 * 119.72347 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.25125 * 257.42979 * 8 7 6 35 35 H 1.09007 * 109.25123 * 138.00796 * 8 7 6 36 36 H 1.09008 * 109.68257 * 189.21755 * 9 8 7 37 37 H 1.09001 * 109.71184 * 68.68860 * 9 8 7 38 38 H 1.09002 * 109.48806 * 303.15319 * 13 12 10 39 39 H 1.09002 * 109.49141 * 63.19591 * 13 12 10 40 40 H 1.08992 * 109.49038 * 61.57437 * 14 13 12 41 41 H 1.08994 * 109.48641 * 181.64718 * 14 13 12 42 42 H 1.09001 * 109.46898 * 186.18135 * 16 15 14 43 43 H 1.08997 * 109.46990 * 306.17810 * 16 15 14 44 44 H 0.97005 * 119.99662 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.48806 * 180.71933 * 25 15 14 46 46 H 1.09003 * 109.49203 * 60.65575 * 25 15 14 47 47 H 1.09001 * 109.48625 * 296.77747 * 26 12 10 48 48 H 1.09003 * 109.48941 * 56.82355 * 26 12 10 49 49 H 1.08999 * 109.21976 * 77.21455 * 27 6 5 50 50 H 1.09001 * 109.29820 * 317.77837 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1994 -0.0005 5 6 4.2594 0.0021 0.0016 6 6 3.5727 -1.2048 0.0047 7 6 2.1956 -1.2060 0.0007 8 6 1.3860 -2.4761 -0.0048 9 6 2.2443 -3.6622 0.4298 10 6 3.5281 -3.6636 -0.4085 11 1 3.2766 -3.5742 -1.4653 12 7 4.2670 -4.9126 -0.1799 13 6 5.4491 -4.9918 -1.0493 14 6 6.1454 -6.3384 -0.8384 15 7 6.5241 -6.4750 0.5750 16 6 7.2630 -7.7239 0.8036 17 6 8.5862 -7.6634 0.0851 18 1 8.8520 -6.7849 -0.4842 19 6 9.4577 -8.7296 0.1543 20 7 9.1342 -9.7993 0.8479 21 14 11.0982 -8.6544 -0.7358 22 1 11.8901 -7.5096 -0.2184 23 1 11.8451 -9.9169 -0.5048 24 1 10.8639 -8.4766 -2.1914 25 6 5.3419 -6.3958 1.4444 26 6 4.6461 -5.0490 1.2334 27 6 4.3847 -2.4736 0.0190 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5140 31 1 1.6486 2.1320 0.0004 32 1 4.1145 2.1339 -0.0031 33 1 5.3394 0.0038 0.0016 34 1 1.0069 -2.6563 -1.0108 35 1 0.5459 -2.3698 0.6815 36 1 1.6976 -4.5909 0.2654 37 1 2.4958 -3.5666 1.4861 38 1 5.1412 -4.9008 -2.0910 39 1 6.1375 -4.1837 -0.8017 40 1 5.4664 -7.1457 -1.1123 41 1 7.0388 -6.3872 -1.4609 42 1 7.4352 -7.8537 1.8721 43 1 6.6818 -8.5645 0.4246 44 1 9.7472 -10.5495 0.8963 45 1 5.6498 -6.4868 2.4860 46 1 4.6533 -7.2036 1.1965 47 1 5.3255 -4.2418 1.5072 48 1 3.7527 -4.9994 1.8560 49 1 4.7629 -2.6463 1.0266 50 1 5.2255 -2.3709 -0.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171571438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:54 Heat of formation + Delta-G solvation = 21.985403 kcal Electronic energy + Delta-G solvation = -26476.476194 eV Core-core repulsion = 23081.373068 eV Total energy + Delta-G solvation = -3395.103126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61486 -38.87012 -36.40994 -34.18856 -33.59809 -32.32123 -30.58064 -30.11480 -29.33255 -27.17782 -26.83451 -24.99421 -23.90957 -22.82763 -22.21185 -21.28028 -20.98631 -19.64414 -18.49980 -16.56753 -16.30288 -16.12191 -15.72432 -15.05353 -14.68898 -14.50689 -14.46411 -14.31662 -14.04013 -13.76195 -13.62007 -13.52558 -13.15519 -13.07122 -12.78610 -12.63447 -12.40525 -12.09886 -11.82755 -11.71190 -11.54853 -11.50305 -11.22218 -11.00991 -10.96887 -10.73305 -10.65269 -10.61054 -10.44058 -10.28731 -10.12187 -9.67392 -9.16425 -8.68596 -8.67604 -8.41964 -8.03236 -7.19540 -6.01055 -4.02493 1.19586 1.23746 3.34115 3.38141 3.40966 3.55616 4.03812 4.43465 4.48430 4.59855 4.69949 4.75032 4.82307 4.94815 5.01022 5.07670 5.08926 5.27112 5.31251 5.33911 5.35889 5.40838 5.44833 5.50663 5.53925 5.57601 5.66217 5.68946 5.77983 5.85634 5.87992 5.92546 5.95404 5.98366 6.08481 6.13437 6.19662 6.30221 6.36220 6.41730 6.48433 6.55883 6.64092 6.72168 6.88576 7.22948 7.30450 7.38410 7.41717 7.81647 8.11660 8.23694 8.57778 9.04790 9.61558 11.09768 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002618 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.410107 B =10692.201921 C =11312.385772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.061 4.061 7 C -0.077 4.077 8 C -0.078 4.078 9 C -0.111 4.111 10 C 0.088 3.912 11 H 0.082 0.918 12 N -0.530 5.530 13 C 0.056 3.944 14 C 0.068 3.932 15 N -0.538 5.538 16 C 0.194 3.806 17 C -0.507 4.507 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.056 3.944 26 C 0.055 3.945 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.085 0.915 42 H 0.029 0.971 43 H -0.009 1.009 44 H 0.261 0.739 45 H 0.070 0.930 46 H 0.030 0.970 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 19.696 -1.683 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.077 4.077 8 C -0.115 4.115 9 C -0.149 4.149 10 C -0.020 4.020 11 H 0.100 0.900 12 N -0.253 5.253 13 C -0.072 4.072 14 C -0.061 4.061 15 N -0.264 5.264 16 C 0.069 3.931 17 C -0.546 4.546 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.073 4.073 26 C -0.073 4.073 27 C -0.156 4.156 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.009 0.991 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.422 19.472 -1.629 26.179 hybrid contribution 1.098 0.088 -0.397 1.170 sum -16.324 19.560 -2.025 25.557 Atomic orbital electron populations 1.20838 0.91463 1.02749 1.02229 1.19896 0.95888 0.92678 1.00402 1.20902 0.94316 0.97248 1.02114 1.21022 0.94343 0.97842 1.00565 1.21184 0.99886 0.92069 1.01316 1.19590 0.92858 0.94854 0.98893 1.19499 0.92831 0.94520 1.00864 1.20485 0.97516 0.91524 1.01997 1.21617 0.95583 0.97987 0.99724 1.21677 0.93413 0.87012 0.99948 0.89995 1.62454 1.23912 1.32981 1.05971 1.22257 0.90338 0.98575 0.96043 1.21983 0.98495 0.94106 0.91500 1.62278 1.19930 1.40521 1.03655 1.19687 0.92505 0.83695 0.97205 1.21117 1.01235 1.01435 1.30792 0.92014 1.24994 0.98543 0.95379 0.95716 1.69959 1.36832 1.05849 1.41192 0.86567 0.83617 0.77191 0.80055 1.20215 1.21369 1.20280 1.22066 0.92085 0.95137 0.97982 1.22250 0.98366 0.97898 0.88779 1.21254 0.98586 0.92673 1.03084 0.91245 0.91764 0.91257 0.86404 0.86291 0.86299 0.90587 0.90613 0.90372 0.91638 0.91294 0.94136 0.95373 0.89653 0.95296 0.99103 0.92892 0.91179 0.95217 0.93995 0.91037 0.89857 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.14 36.01 0.33 -0.48 16 2 C -0.09 -0.84 5.89 -104.48 -0.62 -1.46 16 3 C -0.13 -1.19 9.68 -39.68 -0.38 -1.57 16 4 C -0.12 -1.15 10.05 -39.68 -0.40 -1.55 16 5 C -0.13 -1.36 9.61 -39.44 -0.38 -1.74 16 6 C -0.06 -0.69 5.74 -104.61 -0.60 -1.29 16 7 C -0.08 -0.81 5.74 -104.62 -0.60 -1.41 16 8 C -0.08 -0.70 4.45 -28.06 -0.12 -0.82 16 9 C -0.11 -1.15 4.74 -26.71 -0.13 -1.27 16 10 C 0.09 1.05 2.26 -67.68 -0.15 0.90 16 11 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 12 N -0.53 -7.67 4.71 -226.44 -1.07 -8.74 16 13 C 0.06 0.88 5.27 -3.76 -0.02 0.86 16 14 C 0.07 1.34 5.43 -3.76 -0.02 1.32 16 15 N -0.54 -11.77 4.70 -235.91 -1.11 -12.88 16 16 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 17 C -0.51 -14.31 8.47 -34.44 -0.29 -14.60 16 18 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 19 C 0.05 1.57 5.46 -17.81 -0.10 1.47 16 20 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 21 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 26 C 0.05 0.83 4.83 -3.76 -0.02 0.81 16 27 C -0.12 -1.38 4.31 -28.04 -0.12 -1.50 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 6.71 -51.93 -0.35 0.09 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.16 8.05 -52.48 -0.42 0.74 16 34 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.08 0.59 7.18 -51.93 -0.37 0.21 16 36 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 38 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.04 0.65 6.83 -51.93 -0.35 0.30 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.80 6.79 -51.93 -0.35 1.45 16 42 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.65 6.27 -51.93 -0.33 0.32 16 48 H 0.07 0.94 6.40 -51.93 -0.33 0.61 16 49 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 50 H 0.08 0.93 7.05 -51.93 -0.37 0.56 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -30.26 373.80 -13.02 -43.28 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.53 Total: -1.63 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.67 Total: -16.22 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.44 Total: -47.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.26 -13.02 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171571438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.266 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds