Wall clock time and date at job start Tue Mar 31 2020 11:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37972 * 119.72653 * 2 1 4 4 C 1.38221 * 119.77614 * 180.02562 * 3 2 1 5 5 C 1.37984 * 119.76429 * 359.87413 * 4 3 2 6 6 C 1.38860 * 120.54539 * 359.97438 * 5 4 3 7 7 C 1.37706 * 119.69038 * 0.24442 * 6 5 4 8 8 C 1.50625 * 122.56280 * 179.60974 * 7 6 5 9 9 C 1.52723 * 110.59771 * 17.71953 * 8 7 6 10 10 C 1.53322 * 108.40151 * 308.94380 * 9 8 7 11 11 H 1.09006 * 109.68252 * 310.11715 * 10 9 8 12 12 N 1.46899 * 109.68642 * 189.60314 * 10 9 8 13 13 C 1.46956 * 111.00293 * 175.51962 * 12 10 9 14 14 C 1.53056 * 109.38342 * 183.17592 * 13 12 10 15 15 N 1.46963 * 109.35944 * 301.62902 * 14 13 12 16 16 C 1.46903 * 110.99595 * 183.16796 * 15 14 13 17 17 C 1.50697 * 109.46882 * 66.17766 * 16 15 14 18 18 H 1.08001 * 120.00544 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31526 * 119.99817 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47426 * 59.99703 * 21 19 17 23 23 H 1.48502 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46936 * 299.99681 * 21 19 17 25 25 C 1.46956 * 110.89784 * 59.28921 * 15 14 13 26 26 C 1.46962 * 110.99604 * 299.31774 * 12 10 9 27 27 C 1.50649 * 117.73894 * 180.51845 * 6 5 4 28 28 H 1.08997 * 109.47333 * 269.98863 * 1 2 3 29 29 H 1.09002 * 109.47237 * 29.98951 * 1 2 3 30 30 H 1.08997 * 109.47223 * 149.98872 * 1 2 3 31 31 H 1.07999 * 120.11768 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.12061 * 179.84534 * 4 3 2 33 33 H 1.08003 * 119.72347 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.25125 * 257.42979 * 8 7 6 35 35 H 1.09007 * 109.25123 * 138.00796 * 8 7 6 36 36 H 1.09008 * 109.68257 * 189.21755 * 9 8 7 37 37 H 1.09001 * 109.71184 * 68.68860 * 9 8 7 38 38 H 1.09002 * 109.48806 * 303.15319 * 13 12 10 39 39 H 1.09002 * 109.49141 * 63.19591 * 13 12 10 40 40 H 1.08992 * 109.49038 * 61.57437 * 14 13 12 41 41 H 1.08994 * 109.48641 * 181.64718 * 14 13 12 42 42 H 1.09001 * 109.46898 * 186.18135 * 16 15 14 43 43 H 1.08997 * 109.46990 * 306.17810 * 16 15 14 44 44 H 0.97005 * 119.99662 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.48806 * 180.71933 * 25 15 14 46 46 H 1.09003 * 109.49203 * 60.65575 * 25 15 14 47 47 H 1.09001 * 109.48625 * 296.77747 * 26 12 10 48 48 H 1.09003 * 109.48941 * 56.82355 * 26 12 10 49 49 H 1.08999 * 109.21976 * 77.21455 * 27 6 5 50 50 H 1.09001 * 109.29820 * 317.77837 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1994 -0.0005 5 6 4.2594 0.0021 0.0016 6 6 3.5727 -1.2048 0.0047 7 6 2.1956 -1.2060 0.0007 8 6 1.3860 -2.4761 -0.0048 9 6 2.2443 -3.6622 0.4298 10 6 3.5281 -3.6636 -0.4085 11 1 3.2766 -3.5742 -1.4653 12 7 4.2670 -4.9126 -0.1799 13 6 5.4491 -4.9918 -1.0493 14 6 6.1454 -6.3384 -0.8384 15 7 6.5241 -6.4750 0.5750 16 6 7.2630 -7.7239 0.8036 17 6 8.5862 -7.6634 0.0851 18 1 8.8520 -6.7849 -0.4842 19 6 9.4577 -8.7296 0.1543 20 7 9.1342 -9.7993 0.8479 21 14 11.0982 -8.6544 -0.7358 22 1 11.8901 -7.5096 -0.2184 23 1 11.8451 -9.9169 -0.5048 24 1 10.8639 -8.4766 -2.1914 25 6 5.3419 -6.3958 1.4444 26 6 4.6461 -5.0490 1.2334 27 6 4.3847 -2.4736 0.0190 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5140 31 1 1.6486 2.1320 0.0004 32 1 4.1145 2.1339 -0.0031 33 1 5.3394 0.0038 0.0016 34 1 1.0069 -2.6563 -1.0108 35 1 0.5459 -2.3698 0.6815 36 1 1.6976 -4.5909 0.2654 37 1 2.4958 -3.5666 1.4861 38 1 5.1412 -4.9008 -2.0910 39 1 6.1375 -4.1837 -0.8017 40 1 5.4664 -7.1457 -1.1123 41 1 7.0388 -6.3872 -1.4609 42 1 7.4352 -7.8537 1.8721 43 1 6.6818 -8.5645 0.4246 44 1 9.7472 -10.5495 0.8963 45 1 5.6498 -6.4868 2.4860 46 1 4.6533 -7.2036 1.1965 47 1 5.3255 -4.2418 1.5072 48 1 3.7527 -4.9994 1.8560 49 1 4.7629 -2.6463 1.0266 50 1 5.2255 -2.3709 -0.6671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171571438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:53 Heat of formation + Delta-G solvation = 4.676591 kcal Electronic energy + Delta-G solvation = -26477.226760 eV Core-core repulsion = 23081.373068 eV Total energy + Delta-G solvation = -3395.853693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48993 -40.05932 -37.71639 -35.39771 -34.64219 -34.06809 -31.93033 -31.04322 -30.51535 -28.76096 -27.52080 -26.57912 -24.94840 -24.17936 -23.62908 -22.63626 -21.71517 -20.87874 -19.63862 -18.46157 -17.55079 -17.08880 -16.59854 -16.57796 -15.98948 -15.86320 -15.74239 -15.40264 -15.19322 -14.99869 -14.71072 -14.61018 -14.45163 -13.99739 -13.85389 -13.69271 -13.41167 -13.32057 -13.06448 -12.94211 -12.77373 -12.57395 -12.52001 -12.45671 -12.32980 -12.25684 -12.11050 -11.91122 -11.72288 -11.48751 -11.37247 -11.28480 -11.06554 -10.62007 -9.48437 -9.38658 -9.21841 -9.01074 -8.21302 -6.31916 0.46298 0.49456 1.40136 1.43635 1.51534 2.39463 2.81618 2.90138 3.10650 3.29895 3.70056 3.80369 3.82460 4.02987 4.03669 4.12511 4.19892 4.24260 4.27396 4.34972 4.37312 4.45571 4.48699 4.51948 4.59155 4.64695 4.70040 4.81022 4.85051 4.87404 4.89319 4.92562 4.99138 5.00101 5.03047 5.05293 5.09273 5.18350 5.21743 5.27681 5.32881 5.37583 5.39166 5.62775 5.63517 5.70483 5.79901 6.01597 6.08471 6.12465 6.20456 6.35695 6.62267 6.83721 7.37774 8.89776 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002618 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.410107 B =10692.201921 C =11312.385772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.089 4.089 8 C -0.072 4.072 9 C -0.107 4.107 10 C 0.092 3.908 11 H 0.086 0.914 12 N -0.535 5.535 13 C 0.068 3.932 14 C 0.070 3.930 15 N -0.545 5.545 16 C 0.210 3.790 17 C -0.524 4.524 18 H 0.063 0.937 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.054 3.946 26 C 0.067 3.933 27 C -0.109 4.109 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.015 0.985 41 H 0.067 0.933 42 H 0.003 0.997 43 H -0.041 1.041 44 H 0.265 0.735 45 H 0.068 0.932 46 H 0.021 0.979 47 H 0.040 0.960 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.781 21.861 -2.468 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.080 4.080 7 C -0.089 4.089 8 C -0.109 4.109 9 C -0.144 4.144 10 C -0.016 4.016 11 H 0.104 0.896 12 N -0.258 5.258 13 C -0.060 4.060 14 C -0.058 4.058 15 N -0.270 5.270 16 C 0.083 3.917 17 C -0.562 4.562 18 H 0.081 0.919 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.191 1.191 25 C -0.074 4.074 26 C -0.061 4.061 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.021 0.979 43 H -0.023 1.023 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.723 21.664 -2.417 28.735 hybrid contribution 1.429 -0.546 -0.127 1.535 sum -17.294 21.118 -2.544 27.414 Atomic orbital electron populations 1.20888 0.89549 1.03709 1.03025 1.20240 0.97390 0.92366 0.99543 1.21241 0.94331 0.98239 1.01304 1.21290 0.94913 0.98145 1.00078 1.21330 1.00185 0.92582 1.02107 1.19626 0.93475 0.94588 1.00326 1.19718 0.92610 0.95624 1.00906 1.20481 0.97403 0.90126 1.02921 1.21581 0.94839 0.98870 0.99146 1.21715 0.93709 0.85556 1.00598 0.89597 1.62445 1.23138 1.34964 1.05243 1.22093 0.90672 0.95643 0.97606 1.21964 0.97853 0.96224 0.89804 1.62214 1.21695 1.37576 1.05492 1.19333 0.92501 0.84742 0.95077 1.21412 1.02082 1.01676 1.31061 0.91926 1.25944 1.02598 0.94803 0.96384 1.70092 1.38368 1.06606 1.42448 0.85418 0.78527 0.77483 0.79080 1.19335 1.20778 1.19121 1.22166 0.90864 0.97176 0.97222 1.22130 0.98922 0.95253 0.89756 1.21111 0.98364 0.93140 1.02087 0.90402 0.90625 0.90570 0.84299 0.84588 0.86275 0.89671 0.88971 0.90105 0.91963 0.89138 0.94312 0.96657 0.91444 0.97927 1.02327 0.92649 0.91321 0.96068 0.94219 0.88532 0.91008 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.14 71.24 0.65 -0.58 16 2 C -0.10 -1.58 5.89 -19.78 -0.12 -1.69 16 3 C -0.13 -2.16 9.68 22.20 0.22 -1.94 16 4 C -0.13 -2.23 10.05 22.21 0.22 -2.01 16 5 C -0.14 -2.98 9.61 22.36 0.21 -2.76 16 6 C -0.08 -1.71 5.74 -19.86 -0.11 -1.83 16 7 C -0.09 -1.67 5.74 -19.86 -0.11 -1.78 16 8 C -0.07 -1.10 4.45 29.73 0.13 -0.97 16 9 C -0.11 -1.96 4.74 30.61 0.15 -1.81 16 10 C 0.09 2.04 2.26 44.94 0.10 2.15 16 11 H 0.09 1.88 8.08 -2.38 -0.02 1.86 16 12 N -0.53 -14.92 4.71 -870.32 -4.10 -19.01 16 13 C 0.07 2.11 5.27 86.31 0.45 2.56 16 14 C 0.07 2.84 5.43 86.31 0.47 3.31 16 15 N -0.54 -24.63 4.70 -900.27 -4.23 -28.86 16 16 C 0.21 11.63 4.72 85.56 0.40 12.03 16 17 C -0.52 -30.39 8.47 25.60 0.22 -30.18 16 18 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 21 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.05 2.05 5.61 86.31 0.48 2.53 16 26 C 0.07 1.97 4.83 86.31 0.42 2.39 16 27 C -0.11 -2.46 4.31 29.74 0.13 -2.33 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.08 0.71 6.71 -2.39 -0.02 0.69 16 31 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.12 2.32 8.05 -2.91 -0.02 2.30 16 34 H 0.09 1.17 8.11 -2.38 -0.02 1.15 16 35 H 0.09 1.13 7.18 -2.38 -0.02 1.11 16 36 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.19 6.89 -2.39 -0.02 1.17 16 38 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 39 H 0.04 1.23 6.83 -2.39 -0.02 1.21 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 2.93 6.79 -2.39 -0.02 2.92 16 42 H 0.00 0.16 8.03 -2.39 -0.02 0.14 16 43 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 44 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 45 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.04 1.21 6.27 -2.39 -0.01 1.19 16 48 H 0.10 2.38 6.40 -2.39 -0.02 2.37 16 49 H 0.07 1.77 5.96 -2.39 -0.01 1.76 16 50 H 0.07 1.61 7.05 -2.39 -0.02 1.60 16 Total: -1.00 -66.57 373.80 -0.74 -67.31 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.90 Total: 13.12 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.37 Total: -22.41 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -8.04 Total: -104.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.57 -0.74 -67.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171571438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.986 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds