Wall clock time and date at job start Tue Mar 31 2020 11:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47218 * 269.99712 * 3 2 1 5 5 H 1.48504 * 109.47222 * 29.99598 * 3 2 1 6 6 H 1.48498 * 109.47226 * 149.99551 * 3 2 1 7 7 C 1.37879 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00021 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.47776 * 111.00047 * 180.02562 * 10 9 7 12 12 H 1.09106 * 107.51482 * 35.67519 * 11 10 9 13 13 C 1.52470 * 108.70163 * 155.00259 * 11 10 9 14 14 C 1.52482 * 112.03238 * 169.13406 * 13 11 10 15 15 H 1.09246 * 109.28865 * 123.96724 * 14 13 11 16 16 C 1.53685 * 108.90354 * 242.30097 * 14 13 11 17 17 C 1.52972 * 109.35727 * 63.85700 * 16 14 13 18 18 C 1.52969 * 110.16867 * 56.33948 * 17 16 14 19 19 C 1.53676 * 109.40583 * 303.74276 * 18 17 16 20 20 H 1.09258 * 108.45452 * 177.13112 * 19 18 17 21 21 C 1.52462 * 108.70125 * 276.35115 * 11 10 9 22 22 N 1.45369 * 108.44131 * 57.90338 * 19 18 17 23 23 C 1.44623 * 116.49534 * 157.98177 * 22 19 18 24 24 C 1.50702 * 109.46828 * 307.39061 * 23 22 19 25 25 C 1.38234 * 119.99737 * 269.72472 * 24 23 22 26 26 C 1.38240 * 120.00060 * 179.81271 * 25 24 23 27 27 C 1.38243 * 119.99537 * 0.41554 * 26 25 24 28 28 C 1.38232 * 119.99886 * 359.81587 * 27 26 25 29 29 C 1.38232 * 120.00603 * 359.97438 * 28 27 26 30 30 H 0.97000 * 120.00135 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47138 * 60.00142 * 9 7 2 32 32 H 1.09000 * 109.47123 * 300.00337 * 9 7 2 33 33 H 1.00906 * 110.99746 * 56.04426 * 10 9 7 34 34 H 1.09417 * 109.39545 * 47.68893 * 13 11 10 35 35 H 1.09616 * 109.11529 * 289.90280 * 13 11 10 36 36 H 1.08930 * 109.08214 * 183.82290 * 16 14 13 37 37 H 1.08890 * 109.16377 * 303.74568 * 16 14 13 38 38 H 1.09022 * 109.70875 * 295.48475 * 17 16 14 39 39 H 1.09322 * 109.22898 * 176.31481 * 17 16 14 40 40 H 1.08909 * 109.75126 * 184.00687 * 18 17 16 41 41 H 1.08933 * 109.69793 * 63.37877 * 18 17 16 42 42 H 1.09411 * 109.40876 * 312.45180 * 21 11 10 43 43 H 1.09626 * 109.11075 * 70.25496 * 21 11 10 44 44 H 1.09001 * 109.46882 * 67.38425 * 23 22 19 45 45 H 1.08997 * 109.47513 * 187.39005 * 23 22 19 46 46 H 1.08001 * 120.00115 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.00541 * 180.21067 * 26 25 24 48 48 H 1.08001 * 119.99280 * 179.79454 * 27 26 25 49 49 H 1.08001 * 119.99654 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00506 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 5.4784 -2.6184 0.0035 12 1 5.8287 -1.7819 0.6101 13 6 5.9317 -3.9396 0.6148 14 6 7.4242 -4.1798 0.4155 15 1 7.8968 -4.3406 1.3873 16 6 7.6156 -5.4459 -0.4343 17 6 7.0198 -5.2182 -1.8247 18 6 7.6533 -3.9869 -2.4748 19 6 7.4631 -2.7697 -1.5561 20 1 7.9648 -1.9119 -2.0102 21 6 5.9725 -2.4725 -1.4315 22 7 8.0654 -3.0679 -0.2671 23 6 8.4323 -1.9335 0.5515 24 6 9.2932 -0.9924 -0.2513 25 6 10.6677 -1.1394 -0.2471 26 6 11.4572 -0.2785 -0.9865 27 6 10.8726 0.7347 -1.7232 28 6 9.4984 0.8846 -1.7235 29 6 8.7086 0.0211 -0.9876 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6800 0.8912 32 1 3.8752 -0.6804 -0.8888 33 1 3.6259 -3.0958 -0.7790 34 1 5.3684 -4.7614 0.1626 35 1 5.7121 -3.9323 1.6887 36 1 8.6804 -5.6587 -0.5216 37 1 7.1120 -6.2810 0.0500 38 1 5.9417 -5.0774 -1.7442 39 1 7.2150 -6.0949 -2.4481 40 1 7.1749 -3.7894 -3.4330 41 1 8.7188 -4.1577 -2.6240 42 1 5.4115 -3.1520 -2.0800 43 1 5.7836 -1.4483 -1.7737 44 1 7.5312 -1.4135 0.8767 45 1 8.9873 -2.2790 1.4236 46 1 11.1246 -1.9284 0.3317 47 1 12.5308 -0.3955 -0.9860 48 1 11.4896 1.4092 -2.2982 49 1 9.0417 1.6764 -2.2987 50 1 7.6351 0.1385 -0.9875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172064009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:28 Heat of formation + Delta-G solvation = 25.808874 kcal Electronic energy + Delta-G solvation = -27542.867414 eV Core-core repulsion = 24147.930086 eV Total energy + Delta-G solvation = -3394.937328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83517 -39.04360 -35.69151 -34.24474 -32.72294 -32.60656 -31.19805 -30.92246 -29.96612 -26.95030 -25.83564 -25.67233 -23.20443 -22.74088 -22.03675 -21.28502 -20.96011 -20.59062 -17.55856 -16.99135 -16.81399 -16.49315 -15.52881 -15.40138 -14.91605 -14.74135 -14.62174 -14.40630 -13.75665 -13.54164 -13.45963 -13.35799 -13.06265 -12.92797 -12.78502 -12.63449 -12.47454 -12.29562 -12.01898 -11.83934 -11.56553 -11.24368 -11.12897 -11.01186 -10.81945 -10.77777 -10.71299 -10.57612 -10.18048 -10.03134 -9.81357 -9.75898 -9.29248 -8.97287 -8.84762 -8.62354 -7.84384 -7.43182 -6.07877 -4.05577 1.23906 1.32389 3.25371 3.33325 3.35623 3.56643 4.05525 4.39645 4.64737 4.66061 4.76978 4.89404 4.90919 4.97959 5.04732 5.08147 5.16981 5.23783 5.25066 5.30444 5.32682 5.38622 5.42139 5.46455 5.55886 5.58667 5.79434 5.84627 5.90017 5.93365 5.95734 5.96832 6.03065 6.07566 6.10565 6.14658 6.18637 6.29307 6.37343 6.42346 6.44365 6.53758 6.56759 6.60760 6.78356 6.91377 7.01495 7.45763 7.51863 7.59886 7.89014 8.33016 8.63658 9.00394 9.54342 11.05564 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004664 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.261383 B = 6002.321040 C = 7763.289414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.167 3.833 10 N -0.677 5.677 11 C 0.093 3.907 12 H 0.067 0.933 13 C -0.134 4.134 14 C 0.119 3.881 15 H 0.074 0.926 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.108 4.108 19 C 0.117 3.883 20 H 0.079 0.921 21 C -0.174 4.174 22 N -0.580 5.580 23 C 0.126 3.874 24 C -0.075 4.075 25 C -0.100 4.100 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.111 4.111 30 H 0.264 0.736 31 H 0.022 0.978 32 H -0.022 1.022 33 H 0.333 0.667 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.912 -5.555 -3.040 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.096 0.904 9 C 0.039 3.961 10 N -0.306 5.306 11 C -0.018 4.018 12 H 0.085 0.915 13 C -0.173 4.173 14 C 0.011 3.989 15 H 0.093 0.907 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.146 4.146 19 C 0.008 3.992 20 H 0.097 0.903 21 C -0.215 4.215 22 N -0.303 5.303 23 C 0.000 4.000 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.129 4.129 30 H 0.074 0.926 31 H 0.040 0.960 32 H -0.005 1.005 33 H 0.151 0.849 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 24.006 -5.626 -2.403 24.773 hybrid contribution -0.260 1.652 -0.838 1.870 sum 23.746 -3.975 -3.242 24.294 Atomic orbital electron populations 1.69896 1.06145 1.26864 1.51005 1.24898 0.94727 0.98886 0.94746 0.86840 0.80360 0.83980 0.78424 1.20359 1.21096 1.19248 1.21071 0.89015 0.94766 1.50530 0.90355 1.19988 0.96518 0.85236 0.94389 1.60926 1.03950 1.16385 1.49295 1.21299 0.90013 0.96877 0.93634 0.91530 1.22072 0.95609 0.98181 1.01487 1.21081 0.92249 0.89431 0.96152 0.90739 1.21756 1.00882 0.96377 0.95545 1.21507 1.00639 0.97413 0.96116 1.21748 1.00751 0.94707 0.97410 1.21058 0.92084 0.97793 0.88265 0.90307 1.22879 0.97416 1.01958 0.99232 1.55721 1.56130 1.11667 1.06819 1.20300 0.96863 0.89013 0.93797 1.19853 0.94046 0.95735 0.97905 1.21003 0.93058 0.98685 0.99109 1.21122 0.99623 0.95810 0.97736 1.21123 0.94943 0.98462 0.99650 1.21138 0.93913 0.99359 0.99533 1.21170 1.00032 0.94972 0.96746 0.92646 0.95953 1.00485 0.84947 0.91360 0.91928 0.91793 0.91774 0.91612 0.92733 0.92088 0.91850 0.91512 0.92596 0.93947 0.90343 0.86105 0.86345 0.86418 0.86223 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.91 9.87 -34.44 -0.34 -15.25 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.17 4.08 4.28 -4.98 -0.02 4.06 16 10 N -0.68 -14.00 6.21 -107.91 -0.67 -14.67 16 11 C 0.09 1.53 2.17 -67.78 -0.15 1.38 16 12 H 0.07 1.20 5.62 -51.87 -0.29 0.91 16 13 C -0.13 -1.87 4.87 -27.27 -0.13 -2.00 16 14 C 0.12 1.38 2.89 -68.44 -0.20 1.18 16 15 H 0.07 0.80 8.03 -51.79 -0.42 0.38 16 16 C -0.11 -1.11 5.36 -26.39 -0.14 -1.25 16 17 C -0.12 -1.29 5.43 -26.76 -0.15 -1.43 16 18 C -0.11 -1.22 5.36 -26.40 -0.14 -1.36 16 19 C 0.12 1.46 2.60 -68.44 -0.18 1.29 16 20 H 0.08 1.04 5.42 -51.78 -0.28 0.75 16 21 C -0.17 -2.58 4.56 -27.26 -0.12 -2.71 16 22 N -0.58 -6.85 3.44 -223.96 -0.77 -7.62 16 23 C 0.13 1.49 5.30 -6.20 -0.03 1.46 16 24 C -0.07 -0.87 4.58 -104.62 -0.48 -1.35 16 25 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 27 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 29 C -0.11 -1.35 7.84 -39.58 -0.31 -1.66 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 31 H 0.02 0.57 7.07 -51.93 -0.37 0.20 16 32 H -0.02 -0.55 6.92 -51.93 -0.36 -0.91 16 33 H 0.33 6.78 8.28 -39.29 -0.33 6.45 16 34 H 0.07 0.97 6.58 -51.69 -0.34 0.63 16 35 H 0.06 0.92 8.19 -51.58 -0.42 0.50 16 36 H 0.06 0.64 8.14 -51.97 -0.42 0.21 16 37 H 0.06 0.61 8.13 -51.99 -0.42 0.19 16 38 H 0.07 0.79 5.63 -51.92 -0.29 0.50 16 39 H 0.05 0.53 8.17 -51.75 -0.42 0.11 16 40 H 0.06 0.67 8.12 -51.98 -0.42 0.25 16 41 H 0.06 0.70 8.14 -51.97 -0.42 0.28 16 42 H 0.07 1.00 6.30 -51.70 -0.33 0.67 16 43 H 0.06 0.91 7.65 -51.57 -0.39 0.52 16 44 H 0.04 0.58 5.79 -51.93 -0.30 0.28 16 45 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -30.52 369.12 -12.19 -42.71 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.35 Total: 6.02 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -4.07 Total: -22.06 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.67 Total: -49.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.52 -12.19 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172064009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.520 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds