Wall clock time and date at job start Tue Mar 31 2020 11:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38833 * 119.66888 * 2 1 4 4 C 1.36619 * 120.52942 * 180.26087 * 3 2 1 5 5 C 1.39630 * 119.76484 * 359.74026 * 4 3 2 6 6 C 1.46487 * 134.03353 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.50422 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.46952 * 85.00548 * 7 6 5 9 9 H 1.08995 * 109.47582 * 54.99807 * 8 7 6 10 10 C 1.53006 * 109.47290 * 175.00243 * 8 7 6 11 11 N 1.46904 * 109.46875 * 294.99822 * 8 7 6 12 12 C 1.34241 * 106.99530 * 180.02562 * 6 5 4 13 13 N 1.36823 * 109.93305 * 359.97438 * 12 6 5 14 14 C 1.46507 * 125.06750 * 180.02562 * 13 12 6 15 15 H 1.08999 * 109.46690 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.46559 * 299.97461 * 14 13 12 17 17 C 1.52998 * 109.47078 * 59.97075 * 14 13 12 18 18 C 1.52999 * 109.46763 * 175.00147 * 17 14 13 19 19 C 1.50699 * 109.46725 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00709 * 0.02562 * 19 18 17 21 21 C 1.37884 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99486 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00316 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47457 * 59.99813 * 23 21 19 25 25 H 1.48497 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47165 * 299.99812 * 23 21 19 27 27 C 1.37693 * 109.87164 * 359.97438 * 13 12 6 28 28 C 1.37745 * 119.66547 * 179.74278 * 2 1 3 29 29 H 1.08998 * 109.47057 * 270.25883 * 1 2 3 30 30 H 1.09002 * 109.46787 * 30.25391 * 1 2 3 31 31 H 1.08996 * 109.47001 * 150.25274 * 1 2 3 32 32 H 1.08005 * 119.73385 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.12020 * 179.76749 * 4 3 2 34 34 H 1.08999 * 109.47635 * 205.00221 * 7 6 5 35 35 H 1.08996 * 109.47441 * 325.00573 * 7 6 5 36 36 H 1.09001 * 109.46836 * 59.99610 * 10 8 7 37 37 H 1.08994 * 109.46838 * 179.97438 * 10 8 7 38 38 H 1.08999 * 109.46661 * 299.99593 * 10 8 7 39 39 H 1.00893 * 110.99918 * 176.04585 * 11 8 7 40 40 H 1.00903 * 111.00111 * 300.00152 * 11 8 7 41 41 H 1.08008 * 125.03578 * 179.97438 * 12 6 5 42 42 H 1.08999 * 109.47123 * 299.99366 * 16 14 13 43 43 H 1.08997 * 109.47274 * 59.99876 * 16 14 13 44 44 H 1.09005 * 109.46603 * 180.02562 * 16 14 13 45 45 H 1.08998 * 109.47341 * 295.00130 * 17 14 13 46 46 H 1.09002 * 109.46682 * 55.00450 * 17 14 13 47 47 H 1.08998 * 109.47177 * 300.00082 * 18 17 14 48 48 H 1.08997 * 109.47223 * 60.00193 * 18 17 14 49 49 H 0.97004 * 119.99605 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.11529 * 0.02826 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.2063 0.0000 4 6 3.5603 1.2268 -0.0054 5 6 4.2716 0.0253 -0.0054 6 6 5.6966 -0.3144 -0.0097 7 6 6.8494 0.6560 -0.0163 8 6 7.1639 1.0841 1.4186 9 1 7.3434 0.2001 2.0305 10 6 8.4111 1.9705 1.4248 11 7 6.0264 1.8357 1.9658 12 6 5.7806 -1.6541 -0.0078 13 7 4.5260 -2.2002 -0.0021 14 6 4.2328 -3.6356 0.0019 15 1 3.1532 -3.7858 0.0067 16 6 4.8322 -4.2819 -1.2485 17 6 4.8425 -4.2772 1.2499 18 6 4.4318 -5.7494 1.3188 19 6 5.0319 -6.3812 2.5484 20 1 5.6446 -5.7916 3.2143 21 6 4.7988 -7.7121 2.8233 22 7 4.0523 -8.4299 2.0127 23 14 5.5431 -8.4954 4.3469 24 1 5.0530 -7.7880 5.5571 25 1 5.1445 -9.9243 4.4140 26 1 7.0234 -8.3966 4.2814 27 6 3.5801 -1.1996 0.0005 28 6 2.1888 -1.1969 0.0054 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6445 2.1360 -0.0004 33 1 4.0882 2.1691 -0.0091 34 1 7.7256 0.1765 -0.4526 35 1 6.5832 1.5326 -0.6068 36 1 8.2315 2.8545 0.8129 37 1 8.6347 2.2757 2.4469 38 1 9.2550 1.4128 1.0188 39 1 6.1826 2.0742 2.9336 40 1 5.8398 2.6606 1.4156 41 1 6.7020 -2.2176 -0.0104 42 1 4.3978 -3.8249 -2.1376 43 1 5.9118 -4.1316 -1.2532 44 1 4.6137 -5.3498 -1.2458 45 1 5.9290 -4.2050 1.2016 46 1 4.4829 -3.7576 2.1381 47 1 3.3453 -5.8216 1.3671 48 1 4.7913 -6.2689 0.4307 49 1 3.8880 -9.3661 2.2063 50 1 1.6452 -2.1301 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:14 Heat of formation + Delta-G solvation = 24.618025 kcal Electronic energy + Delta-G solvation = -26246.381599 eV Core-core repulsion = 22851.392632 eV Total energy + Delta-G solvation = -3394.988967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11341 -37.47103 -36.93945 -35.19743 -32.98204 -31.69215 -31.02830 -29.60137 -29.11629 -28.37018 -26.56327 -25.74677 -25.16077 -22.81556 -21.73797 -21.12836 -20.45263 -19.95318 -18.50576 -16.87477 -16.37842 -16.01108 -15.73812 -14.89827 -14.73920 -14.47673 -14.47407 -14.22946 -13.88505 -13.61043 -13.50330 -13.36534 -13.18806 -12.69504 -12.64494 -12.38495 -12.21387 -12.12222 -11.94499 -11.80905 -11.53842 -11.37688 -11.20796 -11.14935 -10.94417 -10.90159 -10.75212 -10.63221 -10.41238 -10.37014 -9.80971 -9.48809 -9.20161 -9.03337 -8.64856 -8.39341 -7.68505 -7.10862 -6.05402 -4.07901 1.48644 1.98631 3.03108 3.24630 3.30556 3.35014 3.37966 4.22385 4.42113 4.50162 4.85827 4.94988 4.99695 5.03579 5.13520 5.16409 5.23151 5.30674 5.38335 5.43283 5.45635 5.48467 5.61333 5.64631 5.69481 5.72020 5.75679 5.82979 5.88675 5.92296 6.02732 6.04638 6.10386 6.18454 6.19754 6.29134 6.40391 6.44573 6.55001 6.65169 6.86267 6.93589 6.96017 7.13958 7.17957 7.23853 7.43754 7.57786 7.65552 7.71745 7.77529 7.92818 8.35479 8.97899 9.56404 11.05747 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003570 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.003795 B = 7842.118460 C = 9347.983494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.159 4.159 4 C -0.051 4.051 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.031 4.031 8 C 0.092 3.908 9 H 0.080 0.920 10 C -0.188 4.188 11 N -0.831 5.831 12 C 0.059 3.941 13 N -0.468 5.468 14 C 0.132 3.868 15 H 0.090 0.910 16 C -0.158 4.158 17 C -0.116 4.116 18 C 0.025 3.975 19 C -0.522 4.522 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.101 3.899 28 C -0.130 4.130 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.336 0.664 40 H 0.333 0.667 41 H 0.157 0.843 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.016 0.984 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 21.313 -6.126 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.078 4.078 3 C -0.178 4.178 4 C -0.070 4.070 5 C -0.090 4.090 6 C -0.175 4.175 7 C -0.069 4.069 8 C -0.020 4.020 9 H 0.098 0.902 10 C -0.247 4.247 11 N -0.360 5.360 12 C -0.067 4.067 13 N -0.149 5.149 14 C 0.031 3.969 15 H 0.108 0.892 16 C -0.216 4.216 17 C -0.154 4.154 18 C -0.012 4.012 19 C -0.560 4.560 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.006 4.006 28 C -0.151 4.151 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.175 0.825 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.041 0.959 49 H 0.071 0.929 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.150 20.085 -6.318 21.087 hybrid contribution 1.151 0.100 1.132 1.618 sum 2.301 20.185 -5.186 20.967 Atomic orbital electron populations 1.20718 0.91674 1.02155 1.01934 1.19401 0.95258 0.92327 1.00843 1.20358 0.94044 0.96729 1.06700 1.20010 0.92987 0.96036 0.97963 1.18844 0.92303 0.91904 1.05951 1.19802 0.92339 0.92217 1.13154 1.19866 0.94919 0.97098 0.95053 1.21476 0.87650 0.96440 0.96453 0.90203 1.22687 0.99984 1.00610 1.01468 1.58813 1.42277 1.28549 1.06348 1.21444 0.88196 0.93076 1.04023 1.44343 1.04164 1.05559 1.60804 1.21648 1.01268 0.76138 0.97852 0.89207 1.22173 1.01066 1.02331 0.95988 1.22034 0.99722 0.99624 0.94009 1.19114 0.96800 0.87850 0.97461 1.21158 1.31288 0.95111 1.08461 0.92773 1.25000 0.95213 0.97351 0.96723 1.69944 1.38239 1.08076 1.37152 0.86651 0.79625 0.78235 0.83481 1.20212 1.21224 1.20214 1.18272 0.90773 0.87840 1.03754 1.19842 0.90337 0.97889 1.06995 0.91577 0.91966 0.91964 0.87030 0.87026 0.91365 0.91882 0.92907 0.92961 0.92147 0.85226 0.85454 0.82529 0.93072 0.92323 0.89693 0.92724 0.92706 0.96542 0.95938 0.92877 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.99 36.01 0.36 -0.79 16 2 C -0.08 -1.05 5.88 -104.58 -0.61 -1.67 16 3 C -0.16 -2.06 9.62 -39.95 -0.38 -2.45 16 4 C -0.05 -0.69 9.87 -39.65 -0.39 -1.08 16 5 C -0.09 -1.30 6.19 -105.14 -0.65 -1.96 16 6 C -0.17 -2.35 5.32 -102.71 -0.55 -2.90 16 7 C -0.03 -0.33 5.40 -27.88 -0.15 -0.48 16 8 C 0.09 0.90 3.35 -67.71 -0.23 0.67 16 9 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 10 C -0.19 -1.45 9.48 37.16 0.35 -1.10 16 11 N -0.83 -8.07 8.62 -4.66 -0.04 -8.11 16 12 C 0.06 0.89 10.16 -16.73 -0.17 0.72 16 13 N -0.47 -7.74 2.65 -107.34 -0.28 -8.02 16 14 C 0.13 2.29 3.00 -67.93 -0.20 2.08 16 15 H 0.09 1.58 7.34 -51.93 -0.38 1.20 16 16 C -0.16 -2.48 8.98 37.16 0.33 -2.14 16 17 C -0.12 -2.36 4.60 -26.73 -0.12 -2.48 16 18 C 0.03 0.63 4.73 -27.88 -0.13 0.50 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.10 1.68 6.81 -83.99 -0.57 1.11 16 28 C -0.13 -2.03 9.44 -39.43 -0.37 -2.41 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.11 1.26 7.72 -52.49 -0.41 0.86 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.34 2.89 9.07 -39.30 -0.36 2.53 16 40 H 0.33 2.76 8.66 -39.29 -0.34 2.42 16 41 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 44 H 0.08 1.42 6.57 -51.93 -0.34 1.08 16 45 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 46 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.02 0.58 6.57 -51.93 -0.34 0.23 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.11 1.71 7.56 -52.49 -0.40 1.31 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -30.63 401.98 -11.30 -41.93 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.84 Total: 5.05 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.90 Total: -27.73 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.41 Total: -41.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.63 -11.30 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.548 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds