Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38833 * 119.66888 * 2 1 4 4 C 1.36619 * 120.52942 * 180.26087 * 3 2 1 5 5 C 1.39630 * 119.76484 * 359.74026 * 4 3 2 6 6 C 1.46487 * 134.03353 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.50422 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.46952 * 85.00548 * 7 6 5 9 9 H 1.08995 * 109.47582 * 54.99807 * 8 7 6 10 10 C 1.53006 * 109.47290 * 175.00243 * 8 7 6 11 11 N 1.46904 * 109.46875 * 294.99822 * 8 7 6 12 12 C 1.34241 * 106.99530 * 180.02562 * 6 5 4 13 13 N 1.36823 * 109.93305 * 359.97438 * 12 6 5 14 14 C 1.46507 * 125.06750 * 180.02562 * 13 12 6 15 15 H 1.08999 * 109.46690 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.46559 * 299.97461 * 14 13 12 17 17 C 1.52998 * 109.47078 * 59.97075 * 14 13 12 18 18 C 1.52999 * 109.46763 * 175.00147 * 17 14 13 19 19 C 1.50699 * 109.46725 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00709 * 0.02562 * 19 18 17 21 21 C 1.37884 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99486 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00316 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47457 * 59.99813 * 23 21 19 25 25 H 1.48497 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47165 * 299.99812 * 23 21 19 27 27 C 1.37693 * 109.87164 * 359.97438 * 13 12 6 28 28 C 1.37745 * 119.66547 * 179.74278 * 2 1 3 29 29 H 1.08998 * 109.47057 * 270.25883 * 1 2 3 30 30 H 1.09002 * 109.46787 * 30.25391 * 1 2 3 31 31 H 1.08996 * 109.47001 * 150.25274 * 1 2 3 32 32 H 1.08005 * 119.73385 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.12020 * 179.76749 * 4 3 2 34 34 H 1.08999 * 109.47635 * 205.00221 * 7 6 5 35 35 H 1.08996 * 109.47441 * 325.00573 * 7 6 5 36 36 H 1.09001 * 109.46836 * 59.99610 * 10 8 7 37 37 H 1.08994 * 109.46838 * 179.97438 * 10 8 7 38 38 H 1.08999 * 109.46661 * 299.99593 * 10 8 7 39 39 H 1.00893 * 110.99918 * 176.04585 * 11 8 7 40 40 H 1.00903 * 111.00111 * 300.00152 * 11 8 7 41 41 H 1.08008 * 125.03578 * 179.97438 * 12 6 5 42 42 H 1.08999 * 109.47123 * 299.99366 * 16 14 13 43 43 H 1.08997 * 109.47274 * 59.99876 * 16 14 13 44 44 H 1.09005 * 109.46603 * 180.02562 * 16 14 13 45 45 H 1.08998 * 109.47341 * 295.00130 * 17 14 13 46 46 H 1.09002 * 109.46682 * 55.00450 * 17 14 13 47 47 H 1.08998 * 109.47177 * 300.00082 * 18 17 14 48 48 H 1.08997 * 109.47223 * 60.00193 * 18 17 14 49 49 H 0.97004 * 119.99605 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.11529 * 0.02826 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.2063 0.0000 4 6 3.5603 1.2268 -0.0054 5 6 4.2716 0.0253 -0.0054 6 6 5.6966 -0.3144 -0.0097 7 6 6.8494 0.6560 -0.0163 8 6 7.1639 1.0841 1.4186 9 1 7.3434 0.2001 2.0305 10 6 8.4111 1.9705 1.4248 11 7 6.0264 1.8357 1.9658 12 6 5.7806 -1.6541 -0.0078 13 7 4.5260 -2.2002 -0.0021 14 6 4.2328 -3.6356 0.0019 15 1 3.1532 -3.7858 0.0067 16 6 4.8322 -4.2819 -1.2485 17 6 4.8425 -4.2772 1.2499 18 6 4.4318 -5.7494 1.3188 19 6 5.0319 -6.3812 2.5484 20 1 5.6446 -5.7916 3.2143 21 6 4.7988 -7.7121 2.8233 22 7 4.0523 -8.4299 2.0127 23 14 5.5431 -8.4954 4.3469 24 1 5.0530 -7.7880 5.5571 25 1 5.1445 -9.9243 4.4140 26 1 7.0234 -8.3966 4.2814 27 6 3.5801 -1.1996 0.0005 28 6 2.1888 -1.1969 0.0054 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6445 2.1360 -0.0004 33 1 4.0882 2.1691 -0.0091 34 1 7.7256 0.1765 -0.4526 35 1 6.5832 1.5326 -0.6068 36 1 8.2315 2.8545 0.8129 37 1 8.6347 2.2757 2.4469 38 1 9.2550 1.4128 1.0188 39 1 6.1826 2.0742 2.9336 40 1 5.8398 2.6606 1.4156 41 1 6.7020 -2.2176 -0.0104 42 1 4.3978 -3.8249 -2.1376 43 1 5.9118 -4.1316 -1.2532 44 1 4.6137 -5.3498 -1.2458 45 1 5.9290 -4.2050 1.2016 46 1 4.4829 -3.7576 2.1381 47 1 3.3453 -5.8216 1.3671 48 1 4.7913 -6.2689 0.4307 49 1 3.8880 -9.3661 2.2063 50 1 1.6452 -2.1301 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = 9.840597 kcal Electronic energy + Delta-G solvation = -26247.022397 eV Core-core repulsion = 22851.392632 eV Total energy + Delta-G solvation = -3395.629765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26045 -38.64276 -37.82305 -36.61203 -34.85255 -33.00690 -32.01495 -31.11073 -30.15975 -29.35431 -27.56639 -27.13371 -26.63816 -24.30117 -23.02461 -22.17994 -21.67235 -21.15480 -19.69280 -18.69015 -17.54474 -17.31287 -16.74644 -16.52963 -15.90670 -15.82916 -15.75360 -15.44574 -14.97057 -14.70543 -14.52205 -14.45331 -14.27156 -13.98445 -13.87194 -13.62126 -13.51198 -13.21706 -13.11026 -12.89916 -12.82009 -12.73279 -12.58053 -12.52291 -12.31700 -12.14082 -12.08251 -11.82431 -11.71651 -11.64481 -11.51758 -11.37745 -11.15207 -10.57009 -10.17420 -9.36625 -8.81973 -8.26928 -8.19843 -6.34153 0.38267 0.88139 1.37796 1.40169 1.48234 1.90608 2.02134 2.38713 3.10010 3.13140 3.64230 3.80117 3.84915 4.01479 4.03161 4.09867 4.18367 4.20543 4.27075 4.35100 4.44610 4.54705 4.58564 4.60571 4.68405 4.73979 4.80018 4.82208 4.87577 4.89595 4.96728 5.01320 5.03339 5.06613 5.11256 5.14499 5.17343 5.21315 5.28915 5.39907 5.44791 5.50630 5.65536 5.78789 5.80451 5.87661 6.08118 6.14085 6.19612 6.47969 6.53772 6.58416 6.79687 6.80614 7.34739 8.87856 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003570 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.003795 B = 7842.118460 C = 9347.983494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.162 4.162 4 C -0.049 4.049 5 C -0.103 4.103 6 C -0.157 4.157 7 C -0.029 4.029 8 C 0.097 3.903 9 H 0.057 0.943 10 C -0.179 4.179 11 N -0.844 5.844 12 C 0.032 3.968 13 N -0.477 5.477 14 C 0.143 3.857 15 H 0.079 0.921 16 C -0.148 4.148 17 C -0.096 4.096 18 C 0.032 3.968 19 C -0.546 4.546 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.961 3.039 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.266 1.266 27 C 0.072 3.928 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.341 0.659 40 H 0.342 0.658 41 H 0.168 0.832 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.037 0.963 47 H -0.010 1.010 48 H 0.012 0.988 49 H 0.265 0.735 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 23.652 -5.954 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.077 4.077 3 C -0.181 4.181 4 C -0.068 4.068 5 C -0.107 4.107 6 C -0.164 4.164 7 C -0.068 4.068 8 C -0.015 4.015 9 H 0.075 0.925 10 C -0.238 4.238 11 N -0.374 5.374 12 C -0.093 4.093 13 N -0.159 5.159 14 C 0.041 3.959 15 H 0.097 0.903 16 C -0.206 4.206 17 C -0.135 4.135 18 C -0.005 4.005 19 C -0.584 4.584 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.785 3.215 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.191 1.191 27 C -0.034 4.034 28 C -0.181 4.181 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.185 0.815 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.008 0.992 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.985 22.454 -6.150 23.366 hybrid contribution 0.815 -0.539 1.071 1.450 sum 2.800 21.915 -5.078 22.669 Atomic orbital electron populations 1.20775 0.89637 1.03296 1.02659 1.19813 0.96876 0.91950 0.99090 1.20745 0.94178 0.97544 1.05630 1.20333 0.93400 0.96303 0.96744 1.19175 0.92936 0.92072 1.06554 1.20203 0.92890 0.92338 1.10937 1.19968 0.94085 0.96779 0.95937 1.21330 0.88742 0.96138 0.95321 0.92464 1.22572 0.98800 1.00482 1.01976 1.58787 1.42501 1.29159 1.06973 1.21780 0.88030 0.93891 1.05573 1.44208 1.04886 1.04750 1.62037 1.21303 1.00391 0.77322 0.96910 0.90325 1.22063 1.01690 1.01158 0.95673 1.21731 0.99979 0.96712 0.95055 1.18964 0.94832 0.90588 0.96157 1.21586 1.31573 0.95787 1.09471 0.92760 1.25894 0.95538 0.97926 0.99952 1.70067 1.39354 1.08462 1.38998 0.85563 0.79181 0.77314 0.79400 1.19593 1.20558 1.19058 1.18660 0.91359 0.88579 1.04807 1.20023 0.90395 0.98593 1.09115 0.90939 0.89741 0.91947 0.84052 0.84618 0.90139 0.90700 0.91812 0.92639 0.91853 0.84646 0.84413 0.81472 0.91708 0.91291 0.91189 0.92179 0.94441 0.99188 0.96997 0.92651 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.99 71.24 0.71 -1.40 16 2 C -0.08 -2.01 5.88 -19.84 -0.12 -2.12 16 3 C -0.16 -3.82 9.62 22.03 0.21 -3.61 16 4 C -0.05 -1.23 9.87 22.23 0.22 -1.01 16 5 C -0.10 -3.06 6.19 -20.20 -0.13 -3.18 16 6 C -0.16 -4.24 5.32 -18.63 -0.10 -4.34 16 7 C -0.03 -0.57 5.40 29.85 0.16 -0.41 16 8 C 0.10 1.73 3.35 44.92 0.15 1.88 16 9 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 10 C -0.18 -2.34 9.48 71.98 0.68 -1.65 16 11 N -0.84 -14.84 8.62 -168.66 -1.45 -16.29 16 12 C 0.03 0.96 10.16 83.00 0.84 1.80 16 13 N -0.48 -16.16 2.65 -493.53 -1.31 -17.47 16 14 C 0.14 5.16 3.00 44.99 0.14 5.30 16 15 H 0.08 2.98 7.34 -2.39 -0.02 2.96 16 16 C -0.15 -4.76 8.98 71.98 0.65 -4.11 16 17 C -0.10 -4.10 4.60 30.59 0.14 -3.96 16 18 C 0.03 1.68 4.73 29.85 0.14 1.82 16 19 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 20 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 21 C 0.01 0.30 5.46 84.66 0.46 0.76 16 22 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 23 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C 0.07 2.45 6.81 39.03 0.27 2.72 16 28 C -0.16 -5.14 9.44 22.37 0.21 -4.93 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.14 2.63 7.72 -2.91 -0.02 2.61 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.34 5.34 9.07 -89.70 -0.81 4.53 16 40 H 0.34 4.79 8.66 -89.69 -0.78 4.01 16 41 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 2.05 7.89 -2.39 -0.02 2.03 16 44 H 0.07 2.45 6.57 -2.38 -0.02 2.43 16 45 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.01 0.63 6.57 -2.39 -0.02 0.62 16 49 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.10 3.38 7.56 -2.91 -0.02 3.36 16 Total: -1.00 -66.88 401.98 3.75 -63.13 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.67 Total: 27.48 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 4.88 Total: -47.51 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.48 Total: -89.52 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.88 3.75 -63.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.968 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds