Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38830 * 119.66530 * 2 1 4 4 C 1.36627 * 120.52421 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.76408 * 359.97438 * 4 3 2 6 6 C 1.46492 * 134.02549 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.50344 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47506 * 85.00186 * 7 6 5 9 9 H 1.08997 * 109.47471 * 54.99251 * 8 7 6 10 10 C 1.53000 * 109.47551 * 175.00110 * 8 7 6 11 11 N 1.46903 * 109.47007 * 294.99819 * 8 7 6 12 12 C 1.34244 * 106.99043 * 179.75831 * 6 5 4 13 13 N 1.36824 * 109.93128 * 0.39687 * 12 6 5 14 14 C 1.46506 * 125.06292 * 179.85510 * 13 12 6 15 15 H 1.08995 * 109.47304 * 179.69775 * 14 13 12 16 16 C 1.52997 * 109.47021 * 59.69257 * 14 13 12 17 17 C 1.52998 * 109.46656 * 299.69501 * 14 13 12 18 18 C 1.53006 * 109.46847 * 184.99730 * 17 14 13 19 19 C 1.50700 * 109.46897 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00547 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99714 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46891 * 60.00038 * 23 21 19 25 25 H 1.48498 * 109.46940 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46820 * 300.00110 * 23 21 19 27 27 C 1.37684 * 109.87565 * 359.58564 * 13 12 6 28 28 C 1.37745 * 119.66226 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47221 * 89.99908 * 1 2 3 30 30 H 1.08997 * 109.46944 * 210.00562 * 1 2 3 31 31 H 1.09000 * 109.46801 * 330.00123 * 1 2 3 32 32 H 1.07995 * 119.73840 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.11350 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.46976 * 204.99646 * 7 6 5 35 35 H 1.09000 * 109.46990 * 324.99497 * 7 6 5 36 36 H 1.09000 * 109.46989 * 59.99357 * 10 8 7 37 37 H 1.08997 * 109.46998 * 179.97438 * 10 8 7 38 38 H 1.09008 * 109.46597 * 299.99925 * 10 8 7 39 39 H 1.00907 * 110.99764 * 300.00203 * 11 8 7 40 40 H 1.00903 * 110.99678 * 63.95069 * 11 8 7 41 41 H 1.07999 * 125.03236 * 180.25117 * 12 6 5 42 42 H 1.09002 * 109.46917 * 180.02562 * 16 14 13 43 43 H 1.08995 * 109.47505 * 300.00396 * 16 14 13 44 44 H 1.09001 * 109.47000 * 60.00883 * 16 14 13 45 45 H 1.08996 * 109.47547 * 304.99765 * 17 14 13 46 46 H 1.09004 * 109.47474 * 65.00410 * 17 14 13 47 47 H 1.08996 * 109.47076 * 300.00324 * 18 17 14 48 48 H 1.09004 * 109.46543 * 60.00658 * 18 17 14 49 49 H 0.97006 * 120.00563 * 179.97438 * 22 21 19 50 50 H 1.07990 * 120.11666 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 -0.0005 5 6 4.2716 0.0253 -0.0005 6 6 5.6966 -0.3143 -0.0005 7 6 6.8494 0.6562 0.0000 8 6 7.1585 1.0803 1.4372 9 1 7.3357 0.1946 2.0472 10 6 8.4055 1.9667 1.4505 11 7 6.0189 1.8302 1.9823 12 6 5.7806 -1.6541 0.0049 13 7 4.5260 -2.2001 -0.0006 14 6 4.2329 -3.6355 -0.0001 15 1 3.1534 -3.7859 0.0002 16 6 4.8379 -4.2792 1.2491 17 6 4.8372 -4.2798 -1.2493 18 6 4.4263 -5.7523 -1.3132 19 6 5.0210 -6.3867 -2.5440 20 1 5.6313 -5.7987 -3.2135 21 6 4.7859 -7.7179 -2.8155 22 7 4.0424 -8.4338 -2.0006 23 14 5.5237 -8.5045 -4.3408 24 1 7.0042 -8.4065 -4.2814 25 1 5.1238 -9.9333 -4.4035 26 1 5.0289 -7.7989 -5.5501 27 6 3.5801 -1.1997 -0.0005 28 6 2.1888 -1.1969 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6445 2.1359 -0.0004 33 1 4.0881 2.1691 -0.0001 34 1 7.7273 0.1779 -0.4344 35 1 6.5852 1.5344 -0.5891 36 1 8.2282 2.8524 0.8404 37 1 8.6254 2.2691 2.4743 38 1 9.2511 1.4102 1.0460 39 1 5.8343 2.6567 1.4337 40 1 5.1983 1.2464 2.0441 41 1 6.7020 -2.2175 0.0102 42 1 4.6202 -5.3472 1.2493 43 1 5.9174 -4.1288 1.2488 44 1 4.4073 -3.8202 2.1391 45 1 4.4737 -3.7623 -2.1371 46 1 5.9240 -4.2075 -1.2060 47 1 4.7898 -6.2697 -0.4255 48 1 3.3396 -5.8246 -1.3567 49 1 3.8767 -9.3703 -2.1917 50 1 1.6452 -2.1301 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = 20.906316 kcal Electronic energy + Delta-G solvation = -26244.578402 eV Core-core repulsion = 22849.428483 eV Total energy + Delta-G solvation = -3395.149919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37161 -37.67839 -37.04289 -35.25869 -33.03273 -31.84712 -31.04861 -29.75673 -29.20724 -28.56337 -26.66188 -25.87368 -25.23014 -22.99269 -21.88716 -21.14470 -20.63551 -20.06163 -18.67924 -16.97258 -16.40252 -16.14516 -15.80713 -15.17302 -14.82387 -14.64471 -14.45553 -14.32785 -14.08327 -13.86848 -13.69365 -13.51084 -13.11873 -12.82246 -12.65250 -12.37316 -12.23929 -12.11079 -12.01502 -11.90343 -11.65264 -11.50538 -11.34049 -11.24155 -11.06472 -10.92710 -10.85053 -10.69445 -10.59260 -10.50027 -9.89418 -9.58078 -9.37453 -9.19472 -8.75960 -8.44242 -7.92257 -7.32320 -6.10082 -4.13052 1.23103 1.74710 2.80476 3.04996 3.27305 3.32009 3.34621 3.96389 4.37933 4.56802 4.71856 4.78377 4.83400 4.94330 5.03435 5.10502 5.23583 5.25710 5.26205 5.32935 5.35320 5.39158 5.51687 5.53122 5.59807 5.61766 5.70366 5.76285 5.78435 5.85167 5.89134 5.98979 6.02322 6.05150 6.09374 6.12548 6.27137 6.32329 6.41497 6.53686 6.62300 6.72404 6.85699 6.90477 6.99410 7.15766 7.43270 7.45276 7.51257 7.56791 7.63500 7.87417 8.29579 8.92618 9.51659 11.00979 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.003352 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.683198 B = 8351.600146 C = 9852.573839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.108 4.108 6 C -0.192 4.192 7 C -0.073 4.073 8 C 0.091 3.909 9 H 0.077 0.923 10 C -0.144 4.144 11 N -0.843 5.843 12 C 0.073 3.927 13 N -0.465 5.465 14 C 0.130 3.870 15 H 0.092 0.908 16 C -0.159 4.159 17 C -0.116 4.116 18 C 0.026 3.974 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.105 3.895 28 C -0.124 4.124 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.332 0.668 40 H 0.347 0.653 41 H 0.162 0.838 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.023 0.977 48 H 0.016 0.984 49 H 0.262 0.738 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 19.842 7.232 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 C -0.167 4.167 4 C -0.094 4.094 5 C -0.113 4.113 6 C -0.199 4.199 7 C -0.113 4.113 8 C -0.021 4.021 9 H 0.096 0.904 10 C -0.202 4.202 11 N -0.373 5.373 12 C -0.054 4.054 13 N -0.145 5.145 14 C 0.030 3.970 15 H 0.110 0.890 16 C -0.216 4.216 17 C -0.155 4.155 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.002 4.002 28 C -0.144 4.144 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.035 0.965 49 H 0.072 0.928 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.526 19.353 7.933 20.922 hybrid contribution -0.085 -0.931 -1.933 2.147 sum 0.442 18.422 6.000 19.379 Atomic orbital electron populations 1.20742 0.91328 1.02447 1.02135 1.19464 0.95537 0.92206 1.00366 1.20404 0.93845 0.97041 1.05409 1.20100 0.93531 0.95780 1.00038 1.19008 0.92527 0.92312 1.07472 1.20008 0.92174 0.92872 1.14893 1.20710 0.95210 0.97315 0.98061 1.21450 0.91259 0.96371 0.93006 0.90448 1.21814 0.96822 0.99483 1.02096 1.59049 1.09780 1.10888 1.57588 1.21529 0.88329 0.93015 1.02518 1.44456 1.04146 1.05819 1.60089 1.21719 1.01429 0.75786 0.98109 0.89035 1.22180 1.01095 1.02489 0.95856 1.22052 0.99827 0.99756 0.93827 1.19113 0.96815 0.87688 0.97556 1.21144 1.31615 0.95137 1.08306 0.92757 1.25000 0.95166 0.97348 0.96745 1.69935 1.38209 1.08166 1.37030 0.86643 0.79631 0.78268 0.83414 1.20174 1.21190 1.20202 1.18249 0.90832 0.87675 1.03465 1.19923 0.90275 0.98137 1.06085 0.91390 0.91747 0.91739 0.86560 0.86957 0.91137 0.91736 0.93009 0.92118 0.92356 0.85587 0.83896 0.82100 0.89513 0.92250 0.92973 0.92706 0.92622 0.95890 0.96527 0.92817 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.99 36.01 0.36 -0.69 16 2 C -0.07 -0.92 5.88 -104.58 -0.61 -1.54 16 3 C -0.15 -1.72 9.62 -39.94 -0.38 -2.10 16 4 C -0.08 -0.91 9.18 -39.64 -0.36 -1.28 16 5 C -0.11 -1.51 5.44 -105.14 -0.57 -2.08 16 6 C -0.19 -2.52 5.10 -102.71 -0.52 -3.04 16 7 C -0.07 -0.77 5.39 -27.89 -0.15 -0.92 16 8 C 0.09 0.90 3.40 -67.71 -0.23 0.67 16 9 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 10 C -0.14 -1.20 9.49 37.16 0.35 -0.85 16 11 N -0.84 -8.57 9.16 -4.67 -0.04 -8.61 16 12 C 0.07 1.04 10.16 -16.73 -0.17 0.87 16 13 N -0.47 -7.19 2.65 -107.35 -0.28 -7.48 16 14 C 0.13 2.14 3.00 -67.93 -0.20 1.94 16 15 H 0.09 1.52 7.34 -51.93 -0.38 1.14 16 16 C -0.16 -2.38 8.98 37.16 0.33 -2.05 16 17 C -0.12 -2.29 4.61 -26.73 -0.12 -2.41 16 18 C 0.03 0.63 4.73 -27.88 -0.13 0.49 16 19 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.11 1.62 6.81 -83.99 -0.57 1.05 16 28 C -0.12 -1.77 9.44 -39.43 -0.37 -2.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.11 1.12 7.72 -52.49 -0.41 0.71 16 34 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.33 2.95 8.66 -39.29 -0.34 2.61 16 40 H 0.35 3.95 6.63 -39.29 -0.26 3.69 16 41 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.09 1.40 6.56 -51.93 -0.34 1.06 16 43 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 47 H 0.02 0.58 6.56 -51.93 -0.34 0.23 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.12 1.62 7.56 -52.49 -0.40 1.22 16 LS Contribution 398.48 15.07 6.00 6.00 Total: -1.00 -29.34 398.48 -11.13 -40.47 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.75 Total: 5.97 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.78 Total: -27.26 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.41 Total: -41.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.34 -11.13 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.381 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds