Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38830 * 119.66530 * 2 1 4 4 C 1.36627 * 120.52421 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.76408 * 359.97438 * 4 3 2 6 6 C 1.46492 * 134.02549 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.50344 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47506 * 85.00186 * 7 6 5 9 9 H 1.08997 * 109.47471 * 54.99251 * 8 7 6 10 10 C 1.53000 * 109.47551 * 175.00110 * 8 7 6 11 11 N 1.46903 * 109.47007 * 294.99819 * 8 7 6 12 12 C 1.34244 * 106.99043 * 179.75831 * 6 5 4 13 13 N 1.36824 * 109.93128 * 0.39687 * 12 6 5 14 14 C 1.46506 * 125.06292 * 179.85510 * 13 12 6 15 15 H 1.08995 * 109.47304 * 179.69775 * 14 13 12 16 16 C 1.52997 * 109.47021 * 59.69257 * 14 13 12 17 17 C 1.52998 * 109.46656 * 299.69501 * 14 13 12 18 18 C 1.53006 * 109.46847 * 184.99730 * 17 14 13 19 19 C 1.50700 * 109.46897 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00547 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99714 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46891 * 60.00038 * 23 21 19 25 25 H 1.48498 * 109.46940 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46820 * 300.00110 * 23 21 19 27 27 C 1.37684 * 109.87565 * 359.58564 * 13 12 6 28 28 C 1.37745 * 119.66226 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47221 * 89.99908 * 1 2 3 30 30 H 1.08997 * 109.46944 * 210.00562 * 1 2 3 31 31 H 1.09000 * 109.46801 * 330.00123 * 1 2 3 32 32 H 1.07995 * 119.73840 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.11350 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.46976 * 204.99646 * 7 6 5 35 35 H 1.09000 * 109.46990 * 324.99497 * 7 6 5 36 36 H 1.09000 * 109.46989 * 59.99357 * 10 8 7 37 37 H 1.08997 * 109.46998 * 179.97438 * 10 8 7 38 38 H 1.09008 * 109.46597 * 299.99925 * 10 8 7 39 39 H 1.00907 * 110.99764 * 300.00203 * 11 8 7 40 40 H 1.00903 * 110.99678 * 63.95069 * 11 8 7 41 41 H 1.07999 * 125.03236 * 180.25117 * 12 6 5 42 42 H 1.09002 * 109.46917 * 180.02562 * 16 14 13 43 43 H 1.08995 * 109.47505 * 300.00396 * 16 14 13 44 44 H 1.09001 * 109.47000 * 60.00883 * 16 14 13 45 45 H 1.08996 * 109.47547 * 304.99765 * 17 14 13 46 46 H 1.09004 * 109.47474 * 65.00410 * 17 14 13 47 47 H 1.08996 * 109.47076 * 300.00324 * 18 17 14 48 48 H 1.09004 * 109.46543 * 60.00658 * 18 17 14 49 49 H 0.97006 * 120.00563 * 179.97438 * 22 21 19 50 50 H 1.07990 * 120.11666 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 -0.0005 5 6 4.2716 0.0253 -0.0005 6 6 5.6966 -0.3143 -0.0005 7 6 6.8494 0.6562 0.0000 8 6 7.1585 1.0803 1.4372 9 1 7.3357 0.1946 2.0472 10 6 8.4055 1.9667 1.4505 11 7 6.0189 1.8302 1.9823 12 6 5.7806 -1.6541 0.0049 13 7 4.5260 -2.2001 -0.0006 14 6 4.2329 -3.6355 -0.0001 15 1 3.1534 -3.7859 0.0002 16 6 4.8379 -4.2792 1.2491 17 6 4.8372 -4.2798 -1.2493 18 6 4.4263 -5.7523 -1.3132 19 6 5.0210 -6.3867 -2.5440 20 1 5.6313 -5.7987 -3.2135 21 6 4.7859 -7.7179 -2.8155 22 7 4.0424 -8.4338 -2.0006 23 14 5.5237 -8.5045 -4.3408 24 1 7.0042 -8.4065 -4.2814 25 1 5.1238 -9.9333 -4.4035 26 1 5.0289 -7.7989 -5.5501 27 6 3.5801 -1.1997 -0.0005 28 6 2.1888 -1.1969 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6445 2.1359 -0.0004 33 1 4.0881 2.1691 -0.0001 34 1 7.7273 0.1779 -0.4344 35 1 6.5852 1.5344 -0.5891 36 1 8.2282 2.8524 0.8404 37 1 8.6254 2.2691 2.4743 38 1 9.2511 1.4102 1.0460 39 1 5.8343 2.6567 1.4337 40 1 5.1983 1.2464 2.0441 41 1 6.7020 -2.2175 0.0102 42 1 4.6202 -5.3472 1.2493 43 1 5.9174 -4.1288 1.2488 44 1 4.4073 -3.8202 2.1391 45 1 4.4737 -3.7623 -2.1371 46 1 5.9240 -4.2075 -1.2060 47 1 4.7898 -6.2697 -0.4255 48 1 3.3396 -5.8246 -1.3567 49 1 3.8767 -9.3703 -2.1917 50 1 1.6452 -2.1301 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = 7.403791 kcal Electronic energy + Delta-G solvation = -26245.163916 eV Core-core repulsion = 22849.428483 eV Total energy + Delta-G solvation = -3395.735432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43465 -38.76141 -37.94131 -36.62807 -34.85644 -33.05031 -32.02021 -31.18129 -30.16073 -29.60771 -27.61191 -27.18662 -26.67275 -24.37912 -23.12992 -22.18297 -21.76588 -21.21792 -19.79403 -18.71897 -17.59978 -17.37009 -16.74592 -16.54181 -16.10360 -15.94279 -15.79920 -15.42888 -15.06858 -14.85758 -14.69849 -14.55806 -14.31638 -14.05006 -13.94535 -13.63064 -13.55929 -13.23401 -13.01118 -12.88648 -12.80641 -12.68079 -12.60372 -12.54946 -12.38271 -12.26297 -12.14220 -11.90597 -11.72615 -11.67878 -11.56487 -11.44100 -11.20919 -10.58446 -10.37011 -9.56324 -8.96473 -8.36954 -8.23917 -6.35668 0.22375 0.74052 1.37248 1.39254 1.47357 1.75507 1.89685 2.37392 2.96527 3.08734 3.58379 3.72333 3.79799 3.87815 3.96998 3.97876 4.11668 4.14554 4.25372 4.28015 4.40044 4.49588 4.55203 4.57061 4.62656 4.68146 4.73581 4.77262 4.81990 4.86392 4.91861 4.95637 5.02370 5.05052 5.05810 5.07486 5.10536 5.18721 5.28736 5.40525 5.41741 5.43439 5.62858 5.65528 5.75792 5.77184 5.91816 6.00371 6.17502 6.35984 6.40265 6.44490 6.68462 6.79286 7.33464 8.86293 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.003352 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.683198 B = 8351.600146 C = 9852.573839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.122 4.122 6 C -0.182 4.182 7 C -0.068 4.068 8 C 0.096 3.904 9 H 0.063 0.937 10 C -0.139 4.139 11 N -0.846 5.846 12 C 0.047 3.953 13 N -0.474 5.474 14 C 0.142 3.858 15 H 0.082 0.918 16 C -0.149 4.149 17 C -0.098 4.098 18 C 0.032 3.968 19 C -0.547 4.547 20 H 0.055 0.945 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.270 1.270 27 C 0.078 3.922 28 C -0.153 4.153 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.341 0.659 40 H 0.340 0.660 41 H 0.171 0.829 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.011 0.989 48 H -0.009 1.009 49 H 0.265 0.735 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 22.131 6.867 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.074 4.074 3 C -0.169 4.169 4 C -0.091 4.091 5 C -0.127 4.127 6 C -0.189 4.189 7 C -0.108 4.108 8 C -0.017 4.017 9 H 0.082 0.918 10 C -0.197 4.197 11 N -0.376 5.376 12 C -0.078 4.078 13 N -0.155 5.155 14 C 0.040 3.960 15 H 0.100 0.900 16 C -0.207 4.207 17 C -0.136 4.136 18 C -0.005 4.005 19 C -0.585 4.585 20 H 0.073 0.927 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.785 3.215 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.196 1.196 27 C -0.028 4.028 28 C -0.174 4.174 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.188 0.812 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.009 0.991 49 H 0.074 0.926 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.210 21.676 7.569 22.992 hybrid contribution -0.366 -1.547 -1.798 2.400 sum 0.844 20.129 5.771 20.957 Atomic orbital electron populations 1.20803 0.89413 1.03518 1.02841 1.19857 0.97050 0.91848 0.98615 1.20788 0.93961 0.97836 1.04274 1.20407 0.93913 0.96006 0.98770 1.19277 0.92907 0.92499 1.07980 1.20325 0.92699 0.92876 1.12967 1.20750 0.94421 0.96928 0.98675 1.21395 0.91857 0.96241 0.92157 0.91838 1.21770 0.96212 0.99558 1.02171 1.59049 1.09486 1.11083 1.57950 1.21834 0.88194 0.93788 1.04003 1.44289 1.04840 1.04987 1.61360 1.21354 1.00646 0.77001 0.96987 0.89954 1.22074 1.01658 1.01303 0.95668 1.21748 1.00080 0.96762 0.95027 1.18962 0.94886 0.90552 0.96135 1.21590 1.31790 0.95771 1.09334 0.92695 1.25890 0.95520 0.97979 0.99936 1.70057 1.39386 1.08525 1.38874 0.85571 0.79180 0.77315 0.79443 1.19085 1.20632 1.19550 1.18617 0.91397 0.88308 1.04489 1.20097 0.90278 0.98860 1.08116 0.90737 0.91771 0.89623 0.83617 0.84577 0.90397 0.90954 0.92148 0.92431 0.91494 0.84636 0.84715 0.81173 0.91087 0.91336 0.91665 0.94190 0.92112 0.97027 0.99093 0.92640 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.99 71.24 0.71 -1.20 16 2 C -0.07 -1.71 5.88 -19.84 -0.12 -1.83 16 3 C -0.15 -3.12 9.62 22.03 0.21 -2.90 16 4 C -0.07 -1.59 9.18 22.23 0.20 -1.39 16 5 C -0.12 -3.29 5.44 -20.20 -0.11 -3.40 16 6 C -0.18 -4.59 5.10 -18.63 -0.09 -4.68 16 7 C -0.07 -1.29 5.39 29.84 0.16 -1.13 16 8 C 0.10 1.71 3.40 44.91 0.15 1.87 16 9 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 10 C -0.14 -2.01 9.49 71.98 0.68 -1.33 16 11 N -0.85 -15.57 9.16 -168.68 -1.55 -17.11 16 12 C 0.05 1.34 10.16 83.00 0.84 2.18 16 13 N -0.47 -14.95 2.65 -493.54 -1.31 -16.26 16 14 C 0.14 4.86 3.00 44.99 0.14 4.99 16 15 H 0.08 2.93 7.34 -2.39 -0.02 2.91 16 16 C -0.15 -4.60 8.98 71.98 0.65 -3.95 16 17 C -0.10 -3.99 4.61 30.60 0.14 -3.85 16 18 C 0.03 1.64 4.73 29.85 0.14 1.78 16 19 C -0.55 -30.77 9.11 25.60 0.23 -30.54 16 20 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 21 C 0.01 0.29 5.46 84.66 0.46 0.76 16 22 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 23 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C 0.08 2.44 6.81 39.03 0.27 2.71 16 28 C -0.15 -4.45 9.44 22.37 0.21 -4.24 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.14 2.27 7.72 -2.91 -0.02 2.25 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.34 5.18 8.66 -89.69 -0.78 4.40 16 40 H 0.34 7.20 6.63 -89.69 -0.59 6.61 16 41 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.07 2.40 6.56 -2.39 -0.02 2.38 16 43 H 0.07 1.96 7.89 -2.39 -0.02 1.94 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 2.39 8.04 -2.38 -0.02 2.37 16 47 H 0.01 0.60 6.56 -2.39 -0.02 0.59 16 48 H -0.01 -0.52 8.14 -2.38 -0.02 -0.53 16 49 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 50 H 0.11 3.22 7.56 -2.92 -0.02 3.19 16 Total: -1.00 -63.79 398.48 3.88 -59.91 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.46 Total: 28.84 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 4.88 Total: -46.16 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.57 Total: -88.47 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.79 3.88 -59.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.311 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds