Wall clock time and date at job start Tue Mar 31 2020 11:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38835 * 119.66673 * 2 1 4 4 C 1.36619 * 120.52885 * 180.02562 * 3 2 1 5 5 C 1.39634 * 119.76159 * 0.03703 * 4 3 2 6 6 C 1.46485 * 134.02630 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.50139 * 359.96831 * 6 5 4 8 8 C 1.52992 * 109.47798 * 84.99281 * 7 6 5 9 9 H 1.08998 * 109.46862 * 305.00591 * 8 7 6 10 10 C 1.52997 * 109.47482 * 185.00026 * 8 7 6 11 11 N 1.46906 * 109.47164 * 64.99560 * 8 7 6 12 12 C 1.34240 * 106.99632 * 180.21603 * 6 5 4 13 13 N 1.36835 * 109.92682 * 359.61599 * 12 6 5 14 14 C 1.46504 * 125.05811 * 180.14187 * 13 12 6 15 15 H 1.08998 * 109.46729 * 180.29820 * 14 13 12 16 16 C 1.52994 * 109.47132 * 60.29910 * 14 13 12 17 17 C 1.52995 * 109.47035 * 300.29689 * 14 13 12 18 18 C 1.53009 * 109.47090 * 185.00183 * 17 14 13 19 19 C 1.50696 * 109.47078 * 180.02562 * 18 17 14 20 20 H 1.08001 * 120.00398 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99821 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00070 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47062 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47345 * 119.99723 * 23 21 19 26 26 H 1.48495 * 109.47370 * 239.99788 * 23 21 19 27 27 C 1.37676 * 109.87447 * 0.40088 * 13 12 6 28 28 C 1.37744 * 119.66678 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47177 * 269.98356 * 1 2 3 30 30 H 1.09001 * 109.47182 * 29.97792 * 1 2 3 31 31 H 1.09001 * 109.47417 * 149.97643 * 1 2 3 32 32 H 1.08004 * 119.73328 * 0.04117 * 3 2 1 33 33 H 1.07997 * 120.12174 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46817 * 324.98514 * 7 6 5 35 35 H 1.09004 * 109.46716 * 204.99680 * 7 6 5 36 36 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 37 37 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 38 38 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 39 39 H 1.00906 * 110.99709 * 60.00181 * 11 8 7 40 40 H 1.00904 * 111.00081 * 183.95382 * 11 8 7 41 41 H 1.07996 * 125.03645 * 179.71699 * 12 6 5 42 42 H 1.09000 * 109.47631 * 59.99577 * 16 14 13 43 43 H 1.09007 * 109.47207 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.47240 * 299.99597 * 16 14 13 45 45 H 1.09003 * 109.47408 * 305.00204 * 17 14 13 46 46 H 1.08993 * 109.47536 * 65.00456 * 17 14 13 47 47 H 1.08994 * 109.46819 * 300.00381 * 18 17 14 48 48 H 1.08999 * 109.47014 * 60.00055 * 18 17 14 49 49 H 0.97004 * 119.99803 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.10620 * 359.95183 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2064 0.0000 4 6 3.5602 1.2269 -0.0005 5 6 4.2715 0.0253 -0.0019 6 6 5.6965 -0.3142 -0.0032 7 6 6.8493 0.6564 -0.0041 8 6 7.1597 1.0811 1.4325 9 1 6.2573 1.4786 1.8969 10 6 8.2454 2.1591 1.4224 11 7 7.6316 -0.0819 2.1959 12 6 5.7806 -1.6540 -0.0089 13 7 4.5260 -2.2001 -0.0028 14 6 4.2330 -3.6355 -0.0035 15 1 3.1534 -3.7859 -0.0030 16 6 4.8382 -4.2801 1.2450 17 6 4.8370 -4.2787 -1.2534 18 6 4.4261 -5.7511 -1.3185 19 6 5.0216 -6.3848 -2.5493 20 1 5.6317 -5.7962 -3.2184 21 6 4.7867 -7.7159 -2.8217 22 7 4.0434 -8.4325 -2.0071 23 14 5.5241 -8.5012 -4.3477 24 1 6.3147 -7.4886 -5.0927 25 1 6.4102 -9.6238 -3.9477 26 1 4.4345 -9.0157 -5.2155 27 6 3.5801 -1.1997 -0.0017 28 6 2.1888 -1.1969 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6444 2.1360 0.0007 33 1 4.0881 2.1691 -0.0001 34 1 6.5845 1.5343 -0.5935 35 1 7.7267 0.1779 -0.4393 36 1 7.8952 3.0221 0.8560 37 1 9.1478 1.7616 0.9580 38 1 8.4662 2.4620 2.4459 39 1 8.4680 -0.4690 1.7850 40 1 7.7821 0.1580 3.1643 41 1 6.7020 -2.2173 -0.0157 42 1 4.4080 -3.8219 2.1356 43 1 4.6198 -5.3481 1.2448 44 1 5.9178 -4.1297 1.2446 45 1 4.4732 -3.7604 -2.1407 46 1 5.9236 -4.2063 -1.2103 47 1 4.7898 -6.2693 -0.4313 48 1 3.3394 -5.8236 -1.3616 49 1 3.8784 -9.3690 -2.1986 50 1 1.6451 -2.1300 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:22 Heat of formation + Delta-G solvation = 23.373728 kcal Electronic energy + Delta-G solvation = -26158.626033 eV Core-core repulsion = 22763.583109 eV Total energy + Delta-G solvation = -3395.042924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14069 -37.52478 -36.95797 -35.20222 -33.01114 -31.78012 -30.95224 -29.62647 -29.18839 -28.38229 -26.59321 -25.76733 -25.16674 -22.83905 -21.78900 -21.14414 -20.43477 -19.95874 -18.61365 -16.85803 -16.36486 -16.02296 -15.77666 -15.05946 -14.69692 -14.52208 -14.39269 -14.17420 -13.98216 -13.66946 -13.54826 -13.41922 -13.22708 -12.74937 -12.66952 -12.30029 -12.23275 -12.11413 -12.00980 -11.72322 -11.63574 -11.37602 -11.25567 -11.16726 -11.00398 -10.93906 -10.75001 -10.61823 -10.44929 -10.35353 -9.81371 -9.49555 -9.20195 -9.07773 -8.72132 -8.39981 -7.73380 -7.13529 -6.05645 -4.08000 1.41998 1.91262 3.06144 3.23483 3.28037 3.35888 3.40299 4.13539 4.42114 4.47161 4.81674 4.88790 4.96975 5.04706 5.06557 5.11246 5.22270 5.30617 5.36721 5.42146 5.45738 5.48932 5.60147 5.65230 5.66564 5.67863 5.73115 5.81577 5.83125 5.89082 5.99386 6.03640 6.10877 6.16825 6.20874 6.24985 6.40628 6.44250 6.54792 6.64639 6.79992 6.87055 6.94820 7.07724 7.13620 7.19900 7.38217 7.58353 7.63309 7.71452 7.76940 7.92866 8.35457 8.98326 9.56455 11.05538 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.003466 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.683316 B = 8077.694286 C = 9718.223867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.074 4.074 5 C -0.105 4.105 6 C -0.174 4.174 7 C -0.031 4.031 8 C 0.093 3.907 9 H 0.079 0.921 10 C -0.188 4.188 11 N -0.836 5.836 12 C 0.087 3.913 13 N -0.468 5.468 14 C 0.132 3.868 15 H 0.089 0.911 16 C -0.157 4.157 17 C -0.116 4.116 18 C 0.025 3.975 19 C -0.520 4.520 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.104 3.896 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.336 0.664 40 H 0.336 0.664 41 H 0.158 0.842 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.023 0.977 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 20.692 8.399 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.172 4.172 4 C -0.092 4.092 5 C -0.110 4.110 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.019 4.019 9 H 0.097 0.903 10 C -0.248 4.248 11 N -0.365 5.365 12 C -0.040 4.040 13 N -0.148 5.148 14 C 0.031 3.969 15 H 0.107 0.893 16 C -0.214 4.214 17 C -0.154 4.154 18 C -0.013 4.013 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.003 4.003 28 C -0.146 4.146 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.257 19.800 8.228 21.478 hybrid contribution 1.268 -0.071 -0.649 1.426 sum 2.524 19.729 7.579 21.285 Atomic orbital electron populations 1.20722 0.91528 1.02408 1.01851 1.19420 0.95370 0.92282 1.00956 1.20361 0.93889 0.96875 1.06111 1.20096 0.93439 0.95986 0.99710 1.19029 0.92775 0.92181 1.07005 1.19738 0.91569 0.92705 1.14046 1.19852 0.95131 0.97128 0.94783 1.21435 0.96798 0.88751 0.94939 0.90325 1.22684 1.00046 1.00501 1.01538 1.58803 1.39374 1.32490 1.05814 1.21379 0.87841 0.92940 1.01812 1.44404 1.04278 1.05590 1.60564 1.21656 1.01213 0.76078 0.97960 0.89272 1.22155 1.01207 1.02137 0.95921 1.22041 0.99833 0.99646 0.93920 1.19124 0.96786 0.87842 0.97526 1.21233 1.31300 0.95091 1.08239 0.92653 1.25009 0.95231 0.97392 0.96744 1.69965 1.38433 1.07985 1.36994 0.86538 0.79028 0.79326 0.83151 1.19724 1.20966 1.20972 1.18227 0.90758 0.87785 1.03573 1.19887 0.90361 0.97970 1.06383 0.91642 0.91868 0.91786 0.86837 0.86937 0.91374 0.91782 0.92177 0.92751 0.93022 0.85159 0.85207 0.82467 0.93049 0.89807 0.92171 0.92766 0.92646 0.95888 0.96549 0.92996 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.99 36.01 0.36 -0.77 16 2 C -0.08 -1.06 5.88 -104.58 -0.61 -1.68 16 3 C -0.15 -1.96 9.61 -39.95 -0.38 -2.34 16 4 C -0.07 -0.99 10.05 -39.65 -0.40 -1.39 16 5 C -0.11 -1.62 6.35 -105.14 -0.67 -2.29 16 6 C -0.17 -2.46 5.30 -102.71 -0.54 -3.00 16 7 C -0.03 -0.33 5.39 -27.89 -0.15 -0.48 16 8 C 0.09 0.87 3.34 -67.71 -0.23 0.64 16 9 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 10 C -0.19 -1.39 9.48 37.16 0.35 -1.03 16 11 N -0.84 -7.78 8.95 -4.67 -0.04 -7.83 16 12 C 0.09 1.32 10.16 -16.73 -0.17 1.15 16 13 N -0.47 -7.75 2.65 -107.35 -0.28 -8.04 16 14 C 0.13 2.29 3.00 -67.93 -0.20 2.08 16 15 H 0.09 1.57 7.34 -51.93 -0.38 1.19 16 16 C -0.16 -2.50 8.99 37.15 0.33 -2.17 16 17 C -0.12 -2.36 4.60 -26.73 -0.12 -2.48 16 18 C 0.02 0.61 4.73 -27.88 -0.13 0.48 16 19 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.10 1.73 6.81 -83.99 -0.57 1.16 16 28 C -0.13 -1.94 9.44 -39.43 -0.37 -2.31 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.24 16 32 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.34 2.77 9.00 -39.29 -0.35 2.42 16 40 H 0.34 2.68 9.07 -39.29 -0.36 2.32 16 41 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.42 6.57 -51.92 -0.34 1.08 16 44 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 1.10 8.03 -51.93 -0.42 0.69 16 47 H 0.02 0.59 6.56 -51.93 -0.34 0.25 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.12 1.71 7.57 -52.49 -0.40 1.31 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -30.53 403.29 -11.33 -41.86 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.87 Total: 4.83 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.92 Total: -27.73 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.41 Total: -41.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.53 -11.33 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.236 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds