Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.11334 * 2 1 4 4 C 1.37937 * 119.77002 * 180.15609 * 3 2 1 5 5 C 1.38917 * 120.54731 * 359.38582 * 4 3 2 6 6 C 1.37659 * 119.67376 * 0.77107 * 5 4 3 7 7 C 1.37937 * 120.11590 * 179.97438 * 2 1 3 8 8 C 1.50641 * 122.56455 * 179.27612 * 6 5 4 9 9 C 1.52734 * 110.58644 * 17.70688 * 8 6 5 10 10 H 1.09002 * 109.68234 * 68.66917 * 9 8 6 11 11 N 1.46892 * 109.68400 * 189.18831 * 9 8 6 12 12 C 1.46958 * 111.00278 * 58.80047 * 11 9 8 13 13 C 1.53049 * 109.36777 * 176.81687 * 12 11 9 14 14 N 1.46960 * 109.36647 * 58.39818 * 13 12 11 15 15 C 1.46892 * 110.99799 * 176.81490 * 14 13 12 16 16 C 1.50696 * 109.47353 * 58.98019 * 15 14 13 17 17 H 1.07999 * 120.00513 * 5.00789 * 16 15 14 18 18 C 1.37885 * 120.00066 * 185.00979 * 16 15 14 19 19 N 1.31511 * 120.00010 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47481 * 59.99970 * 20 18 16 22 22 H 1.48507 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46885 * 299.99603 * 20 18 16 24 24 C 1.46958 * 110.88017 * 300.68468 * 14 13 12 25 25 C 1.46960 * 110.99799 * 295.00069 * 11 9 8 26 26 C 1.53330 * 108.38460 * 308.91019 * 9 8 6 27 27 C 1.50626 * 117.75698 * 180.67657 * 5 4 3 28 28 H 1.08996 * 109.47169 * 90.00680 * 1 2 3 29 29 H 1.09001 * 109.47424 * 210.00208 * 1 2 3 30 30 H 1.09000 * 109.47329 * 330.00460 * 1 2 3 31 31 H 1.07998 * 120.11909 * 359.87333 * 3 2 1 32 32 H 1.08000 * 119.72668 * 179.65213 * 4 3 2 33 33 H 1.07997 * 119.72428 * 0.08937 * 7 2 1 34 34 H 1.08992 * 109.25439 * 137.99221 * 8 6 5 35 35 H 1.09002 * 109.24927 * 257.42804 * 8 6 5 36 36 H 1.09006 * 109.48501 * 296.78155 * 12 11 9 37 37 H 1.09000 * 109.48683 * 56.84135 * 12 11 9 38 38 H 1.09002 * 109.48382 * 298.43063 * 13 12 11 39 39 H 1.09003 * 109.48806 * 178.36894 * 13 12 11 40 40 H 1.08999 * 109.47142 * 178.97943 * 15 14 13 41 41 H 1.09003 * 109.47157 * 298.97957 * 15 14 13 42 42 H 0.96995 * 120.00343 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.48501 * 299.35140 * 24 14 13 44 44 H 1.09000 * 109.48683 * 179.29160 * 24 14 13 45 45 H 1.08993 * 109.48912 * 303.15370 * 25 11 9 46 46 H 1.09000 * 109.48805 * 63.20120 * 25 11 9 47 47 H 1.08999 * 109.68257 * 189.60426 * 26 9 8 48 48 H 1.08997 * 109.68333 * 310.15856 * 26 9 8 49 49 H 1.09002 * 109.25545 * 77.52056 * 27 5 4 50 50 H 1.09001 * 109.22280 * 318.07245 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0033 5 6 4.2789 -0.0128 0.0063 6 6 3.5881 -1.2035 0.0030 7 6 2.1991 -1.1932 0.0005 8 6 4.2795 -2.5419 -0.0032 9 6 5.7368 -2.3956 0.4297 10 1 5.7811 -2.1296 1.4858 11 7 6.4482 -3.6615 0.2082 12 6 6.3927 -4.0564 -1.2063 13 6 7.2101 -5.3344 -1.4089 14 7 6.6744 -6.3973 -0.5469 15 6 7.3859 -7.6632 -0.7684 16 6 8.8526 -7.4724 -0.4801 17 1 9.2077 -6.5313 -0.0867 18 6 9.7414 -8.4992 -0.7184 19 7 9.3091 -9.6453 -1.1970 20 14 11.5595 -8.2628 -0.3603 21 1 11.7443 -7.9556 1.0807 22 1 12.2967 -9.5062 -0.7005 23 1 12.0827 -7.1384 -1.1773 24 6 6.7300 -6.0024 0.8675 25 6 5.9126 -4.7244 1.0702 26 6 6.3819 -1.2870 -0.4104 27 6 5.7837 0.0516 0.0178 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6645 2.1335 -0.0021 32 1 4.1211 2.1224 -0.0090 33 1 1.6565 -2.1269 -0.0005 34 1 3.7663 -3.2147 0.6837 35 1 4.2436 -2.9602 -1.0092 36 1 5.3567 -4.2381 -1.4926 37 1 6.8062 -3.2585 -1.8231 38 1 8.2514 -5.1451 -1.1484 39 1 7.1465 -5.6452 -2.4517 40 1 6.9817 -8.4280 -0.1052 41 1 7.2570 -7.9760 -1.8046 42 1 9.9343 -10.3678 -1.3643 43 1 7.7659 -5.8207 1.1539 44 1 6.3165 -6.8003 1.4843 45 1 5.9762 -4.4136 2.1129 46 1 4.8712 -4.9135 0.8099 47 1 7.4588 -1.2784 -0.2422 48 1 6.1762 -1.4599 -1.4667 49 1 6.1255 0.2926 1.0244 50 1 6.1149 0.8297 -0.6701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172830078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = 3.173342 kcal Electronic energy + Delta-G solvation = -26500.409325 eV Core-core repulsion = 23104.490446 eV Total energy + Delta-G solvation = -3395.918879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42231 -40.03585 -37.85996 -35.65833 -34.39726 -33.17281 -32.32592 -31.72339 -30.20080 -28.49733 -27.56664 -26.53524 -24.60491 -24.26282 -23.25422 -23.05482 -22.23071 -20.83011 -19.54648 -18.35840 -17.48578 -16.97650 -16.66697 -16.37728 -15.93896 -15.84424 -15.69695 -15.43636 -15.23950 -14.81884 -14.77588 -14.63335 -14.43688 -14.03278 -13.76868 -13.55852 -13.46003 -13.37450 -13.19924 -12.88326 -12.81297 -12.72305 -12.47318 -12.32469 -12.21624 -12.08059 -11.98787 -11.84110 -11.80754 -11.65300 -11.42985 -11.35435 -11.11855 -10.60767 -9.60887 -9.30899 -9.16127 -8.98108 -8.15478 -6.35042 0.46839 0.49509 1.36646 1.38213 1.46520 2.37290 2.81656 2.93597 3.08893 3.38699 3.68992 3.82511 3.86193 4.05560 4.08443 4.11463 4.19930 4.26034 4.26590 4.37727 4.44189 4.50256 4.51672 4.59545 4.62287 4.67043 4.71058 4.78076 4.83336 4.88895 4.92810 4.94217 5.00445 5.07692 5.11734 5.14756 5.18803 5.22632 5.25037 5.28029 5.32552 5.37767 5.39900 5.60947 5.72723 5.73712 5.79762 6.03301 6.12886 6.13742 6.19924 6.33101 6.53023 6.85535 7.36161 8.86768 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.002665 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.617983 B =10505.668230 C =11081.596244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.078 4.078 7 C -0.138 4.138 8 C -0.107 4.107 9 C 0.093 3.907 10 H 0.086 0.914 11 N -0.537 5.537 12 C 0.067 3.933 13 C 0.067 3.933 14 N -0.543 5.543 15 C 0.201 3.799 16 C -0.554 4.554 17 H 0.055 0.945 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.065 3.935 25 C 0.069 3.931 26 C -0.108 4.108 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.002 0.998 41 H 0.006 0.994 42 H 0.265 0.735 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.042 0.958 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.237 24.280 3.251 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.093 4.093 6 C -0.079 4.079 7 C -0.156 4.156 8 C -0.146 4.146 9 C -0.015 4.015 10 H 0.104 0.896 11 N -0.260 5.260 12 C -0.061 4.061 13 C -0.062 4.062 14 N -0.267 5.267 15 C 0.074 3.926 16 C -0.593 4.593 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.064 4.064 25 C -0.059 4.059 26 C -0.146 4.146 27 C -0.109 4.109 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.181 24.081 3.200 28.129 hybrid contribution 0.999 -0.867 -0.017 1.323 sum -13.182 23.214 3.183 26.885 Atomic orbital electron populations 1.20807 0.89797 1.03410 1.02841 1.20134 0.97249 0.93053 0.99553 1.21237 0.94377 0.98126 1.01150 1.21409 0.94554 0.97902 1.00136 1.19845 0.96385 0.92455 1.00637 1.19618 0.93598 0.94422 1.00262 1.21213 0.93674 0.98303 1.02370 1.21099 0.96950 0.94410 1.02107 1.21705 0.90077 0.89287 1.00479 0.89626 1.62395 1.54747 1.03264 1.05631 1.22153 0.98499 0.95850 0.89582 1.21925 0.96671 0.90988 0.96570 1.62621 1.54482 1.03949 1.05667 1.19375 0.90908 0.87199 0.95110 1.21924 0.94622 0.99272 1.43490 0.92649 1.25826 1.03516 0.94817 0.94689 1.70055 1.36625 1.04513 1.45470 0.85615 0.79646 0.77594 0.78879 1.19556 1.20615 1.19523 1.21953 0.98295 0.96286 0.89821 1.22092 0.96316 0.89983 0.97554 1.21577 1.00537 0.93264 0.99183 1.20445 0.89878 0.97663 1.02937 0.90679 0.91420 0.90371 0.84243 0.84251 0.86241 0.91171 0.91005 0.94080 0.89199 0.95744 0.92271 0.97969 0.97611 0.92591 0.95938 0.91873 0.89318 0.93999 0.90520 0.92040 0.89769 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.02 71.24 0.71 -0.66 16 2 C -0.10 -1.75 5.87 -19.93 -0.12 -1.87 16 3 C -0.13 -2.10 9.71 22.20 0.22 -1.88 16 4 C -0.12 -2.02 9.61 22.36 0.21 -1.80 16 5 C -0.09 -1.78 5.74 -19.86 -0.11 -1.89 16 6 C -0.08 -1.68 5.74 -19.86 -0.11 -1.79 16 7 C -0.14 -2.80 9.27 22.36 0.21 -2.59 16 8 C -0.11 -2.40 4.30 29.74 0.13 -2.28 16 9 C 0.09 2.12 2.27 44.94 0.10 2.22 16 10 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 11 N -0.54 -15.59 4.71 -870.36 -4.10 -19.69 16 12 C 0.07 2.07 4.83 86.31 0.42 2.49 16 13 C 0.07 2.71 5.24 86.31 0.45 3.16 16 14 N -0.54 -24.19 4.92 -900.29 -4.43 -28.61 16 15 C 0.20 10.89 5.14 85.56 0.44 11.33 16 16 C -0.55 -31.44 7.66 25.60 0.20 -31.25 16 17 H 0.06 3.13 5.82 -2.91 -0.02 3.11 16 18 C 0.01 0.62 5.46 84.66 0.46 1.08 16 19 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 20 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.07 2.59 5.32 86.31 0.46 3.05 16 25 C 0.07 2.10 5.26 86.31 0.45 2.55 16 26 C -0.11 -2.15 4.72 30.62 0.14 -2.00 16 27 C -0.07 -1.17 5.67 29.74 0.17 -1.00 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.14 1.64 8.05 -2.91 -0.02 1.62 16 33 H 0.12 2.27 8.05 -2.91 -0.02 2.25 16 34 H 0.07 1.61 7.04 -2.39 -0.02 1.59 16 35 H 0.07 1.76 5.98 -2.39 -0.01 1.74 16 36 H 0.04 1.26 6.28 -2.38 -0.01 1.24 16 37 H 0.09 2.45 6.39 -2.39 -0.02 2.44 16 38 H 0.02 1.10 6.62 -2.39 -0.02 1.08 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.00 0.13 8.12 -2.39 -0.02 0.11 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.02 1.00 6.78 -2.38 -0.02 0.98 16 44 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16 45 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 46 H 0.04 1.25 6.82 -2.39 -0.02 1.23 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.28 6.89 -2.39 -0.02 1.26 16 49 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -64.43 374.12 -0.88 -65.32 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.90 Total: 15.11 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.43 Total: -23.12 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -8.24 Total: -104.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.43 -0.88 -65.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172830078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.489 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds