Wall clock time and date at job start Tue Mar 31 2020 11:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.42155 * 2 1 4 4 C 1.38632 * 118.41789 * 180.24120 * 3 2 1 5 5 C 1.38227 * 119.16286 * 359.75349 * 4 3 2 6 6 N 1.31857 * 120.76436 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72316 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.61493 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47152 * 164.99710 * 8 7 6 10 10 N 1.46896 * 109.46997 * 44.99648 * 8 7 6 11 11 C 1.46903 * 110.99908 * 155.00060 * 10 8 7 12 12 C 1.52998 * 109.47147 * 275.00225 * 11 10 8 13 13 C 1.53009 * 109.46959 * 299.99892 * 12 11 10 14 14 C 1.52999 * 109.46672 * 300.00004 * 13 12 11 15 15 C 1.50707 * 109.46677 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00272 * 239.99559 * 15 14 13 17 17 C 1.37879 * 120.00029 * 60.00069 * 15 14 13 18 18 N 1.31514 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46987 * 60.00285 * 19 17 15 21 21 H 1.48504 * 109.47136 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47194 * 299.99680 * 19 17 15 23 23 C 1.52998 * 109.47432 * 60.00286 * 14 13 12 24 24 C 1.52995 * 109.47247 * 154.99976 * 11 10 8 25 25 C 1.53000 * 109.46912 * 284.99938 * 8 7 6 26 26 C 1.52995 * 117.50099 * 8.74495 * 25 8 7 27 27 C 1.53004 * 117.50029 * 300.08487 * 25 8 7 28 28 H 1.09002 * 109.47333 * 270.25467 * 1 2 3 29 29 H 1.09000 * 109.46732 * 30.24981 * 1 2 3 30 30 H 1.08996 * 109.47456 * 150.24810 * 1 2 3 31 31 H 1.07995 * 120.78528 * 359.97068 * 3 2 1 32 32 H 1.08000 * 120.41659 * 179.72639 * 4 3 2 33 33 H 1.07997 * 119.61622 * 180.02562 * 5 4 3 34 34 H 1.00895 * 111.00219 * 31.05155 * 10 8 7 35 35 H 1.09001 * 109.46941 * 35.00074 * 11 10 8 36 36 H 1.09000 * 109.47197 * 59.99804 * 12 11 10 37 37 H 1.08999 * 109.47517 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47026 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.46854 * 59.99780 * 13 12 11 40 40 H 1.08999 * 109.47298 * 299.99504 * 14 13 12 41 41 H 0.97005 * 119.99968 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47197 * 179.97438 * 23 14 13 43 43 H 1.09004 * 109.47100 * 59.99504 * 23 14 13 44 44 H 1.09004 * 109.47211 * 180.02562 * 24 11 10 45 45 H 1.08998 * 109.47430 * 300.00269 * 24 11 10 46 46 H 1.09003 * 115.54875 * 154.42270 * 25 8 7 47 47 H 1.08997 * 117.49775 * 0.02562 * 26 25 8 48 48 H 1.09000 * 117.49863 * 145.02467 * 26 25 8 49 49 H 1.08993 * 117.49963 * 214.98702 * 27 25 8 50 50 H 1.08999 * 117.49372 * 359.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1473 -0.0051 5 6 4.2256 -0.0825 -0.0049 6 7 3.5254 -1.1998 0.0007 7 6 2.2065 -1.1917 0.0057 8 6 1.4538 -2.4972 0.0114 9 1 0.4134 -2.3156 0.2810 10 7 2.0614 -3.4085 0.9903 11 6 1.0853 -4.3990 1.4640 12 6 0.2750 -3.8050 2.6179 13 6 1.2178 -3.4299 3.7631 14 6 1.9543 -4.6804 4.2477 15 6 2.8834 -4.3108 5.3753 16 1 3.9452 -4.4826 5.2785 17 6 2.3778 -3.7533 6.5305 18 7 1.0847 -3.5445 6.6486 19 14 3.5293 -3.2958 7.9284 20 1 4.5163 -2.2951 7.4493 21 1 2.7434 -2.7183 9.0483 22 1 4.2436 -4.5098 8.3988 23 6 2.7646 -5.2743 3.0938 24 6 1.8218 -5.6494 1.9486 25 6 1.5172 -3.1285 -1.3809 26 6 2.4496 -2.4826 -2.4076 27 6 0.9330 -2.3282 -2.5467 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8921 -0.5099 31 1 1.6890 2.1422 -0.0005 32 1 4.1737 2.0590 -0.0097 33 1 5.3046 -0.1288 -0.0084 34 1 2.4601 -2.8960 1.7625 35 1 0.4137 -4.6662 0.6482 36 1 -0.2497 -2.9142 2.2727 37 1 -0.4489 -4.5400 2.9697 38 1 0.6405 -3.0072 4.5854 39 1 1.9420 -2.6950 3.4116 40 1 1.2301 -5.4152 4.5992 41 1 0.7290 -3.1520 7.4613 42 1 3.2896 -6.1649 3.4392 43 1 3.4888 -4.5394 2.7423 44 1 1.0976 -6.3845 2.2997 45 1 2.3992 -6.0725 1.1266 46 1 1.4094 -4.2128 -1.4108 47 1 3.0182 -1.6082 -2.0911 48 1 2.9550 -3.1419 -3.1133 49 1 0.4414 -2.8859 -3.3437 50 1 0.5032 -1.3521 -2.3217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:32 Heat of formation + Delta-G solvation = 49.636778 kcal Electronic energy + Delta-G solvation = -27623.458695 eV Core-core repulsion = 24229.554622 eV Total energy + Delta-G solvation = -3393.904073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79448 -38.51085 -37.09695 -34.03660 -33.66678 -32.51488 -31.25415 -29.57945 -28.83917 -27.28710 -25.69337 -24.42212 -23.00229 -22.36218 -21.99455 -21.46475 -20.65698 -19.66797 -17.91991 -16.86634 -16.46562 -16.25816 -16.03490 -15.39644 -14.65008 -14.45440 -14.23488 -14.10046 -13.70813 -13.44025 -13.26024 -13.04888 -12.96611 -12.66902 -12.64238 -12.40170 -12.02031 -11.81680 -11.50030 -11.34300 -11.31106 -11.21281 -11.00975 -10.70911 -10.61586 -10.25032 -10.07630 -10.02601 -9.89031 -9.79457 -9.66310 -9.28888 -9.20893 -8.82243 -8.77830 -8.57475 -8.22403 -7.77436 -5.91940 -3.97215 1.08682 1.30104 3.35257 3.39265 3.42873 3.78448 3.85399 4.26736 4.48773 4.52418 4.65007 4.76956 4.90810 4.95060 5.00553 5.10935 5.26984 5.33909 5.37265 5.45949 5.54395 5.56762 5.58844 5.66653 5.69790 5.74197 5.80534 5.86678 5.94846 6.02272 6.12201 6.16760 6.22371 6.26740 6.32867 6.33796 6.46868 6.58151 6.69853 6.72610 6.75145 6.90044 7.07255 7.28054 7.31007 7.57965 7.59568 7.81824 7.95750 8.11098 8.13089 8.22546 8.56155 9.07267 9.67026 11.13374 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.004386 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.601941 B = 6382.605483 C = 7292.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 C -0.080 4.080 4 C -0.174 4.174 5 C 0.090 3.910 6 N -0.447 5.447 7 C 0.134 3.866 8 C 0.164 3.836 9 H 0.064 0.936 10 N -0.660 5.660 11 C 0.090 3.910 12 C -0.149 4.149 13 C -0.106 4.106 14 C 0.050 3.950 15 C -0.509 4.509 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.122 4.122 26 C -0.169 4.169 27 C -0.194 4.194 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.356 0.644 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.022 0.978 41 H 0.258 0.742 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 7.816 -17.457 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.194 4.194 5 C -0.067 4.067 6 N -0.154 5.154 7 C -0.004 4.004 8 C 0.053 3.947 9 H 0.081 0.919 10 N -0.295 5.295 11 C -0.019 4.019 12 C -0.188 4.188 13 C -0.144 4.144 14 C 0.031 3.969 15 C -0.547 4.547 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.206 4.206 27 C -0.232 4.232 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.007 6.662 -17.775 19.009 hybrid contribution -0.300 1.848 1.462 2.376 sum -1.307 8.510 -16.313 18.446 Atomic orbital electron populations 1.20895 0.90516 1.03069 1.03087 1.20730 0.97488 0.93673 1.01617 1.21404 0.94211 0.97822 0.97165 1.22119 0.95212 0.99666 1.02452 1.22817 1.00429 0.87657 0.95809 1.67593 1.07358 1.30705 1.09794 1.21103 0.90026 0.94088 0.95215 1.19973 0.95127 0.86870 0.92692 0.91855 1.60605 1.32836 1.17459 1.18598 1.21580 0.92203 0.93024 0.95126 1.22280 0.99298 0.99352 0.97861 1.21568 0.97140 0.99779 0.95881 1.18636 0.94034 0.92910 0.91294 1.21242 0.93699 1.40162 0.99595 0.92892 1.24957 0.94906 0.95898 0.98239 1.69869 1.11334 1.44834 1.27185 0.86744 0.80987 0.78774 0.81996 1.20419 1.21446 1.20330 1.21571 0.97865 0.99686 0.95359 1.21487 0.98588 0.95454 0.98367 1.22183 1.04058 0.98778 0.89097 1.23004 0.92089 1.03375 1.02173 1.23052 0.97010 1.01895 1.01194 0.90556 0.91389 0.90624 0.85150 0.85103 0.82872 0.82030 0.92115 0.94506 0.92329 0.89183 0.95310 0.95953 0.93201 0.93994 0.92701 0.92891 0.93015 0.87146 0.88738 0.89424 0.89072 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.93 36.01 0.32 -0.89 16 2 C -0.13 -1.64 5.76 -104.48 -0.60 -2.24 16 3 C -0.08 -0.88 9.86 -39.28 -0.39 -1.26 16 4 C -0.17 -1.87 10.11 -39.44 -0.40 -2.27 16 5 C 0.09 1.13 11.18 -17.54 -0.20 0.94 16 6 N -0.45 -6.75 8.50 -9.47 -0.08 -6.83 16 7 C 0.13 1.91 3.74 -82.59 -0.31 1.61 16 8 C 0.16 2.36 2.08 -68.87 -0.14 2.22 16 9 H 0.06 0.90 4.89 -51.93 -0.25 0.64 16 10 N -0.66 -11.17 5.40 -100.95 -0.55 -11.72 16 11 C 0.09 1.54 2.67 -67.71 -0.18 1.36 16 12 C -0.15 -2.82 5.50 -26.73 -0.15 -2.97 16 13 C -0.11 -2.45 4.73 -26.73 -0.13 -2.58 16 14 C 0.05 1.24 2.10 -91.77 -0.19 1.04 16 15 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.11 -2.30 4.90 -26.73 -0.13 -2.43 16 24 C -0.10 -1.83 5.64 -26.73 -0.15 -1.98 16 25 C -0.12 -1.59 5.72 -90.62 -0.52 -2.11 16 26 C -0.17 -2.12 9.57 -26.70 -0.26 -2.38 16 27 C -0.19 -2.12 9.95 -26.69 -0.27 -2.39 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.08 0.75 5.22 -51.93 -0.27 0.48 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.36 6.92 5.13 -39.29 -0.20 6.72 16 35 H 0.06 0.93 7.48 -51.93 -0.39 0.55 16 36 H 0.04 0.64 7.43 -51.93 -0.39 0.26 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 39 H 0.03 0.68 6.26 -51.93 -0.32 0.35 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.22 7.21 -51.93 -0.37 0.84 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.11 1.48 7.94 -51.93 -0.41 1.07 16 47 H 0.09 1.30 5.55 -51.93 -0.29 1.02 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 0.95 6.53 -51.93 -0.34 0.61 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -29.32 375.55 -11.60 -40.92 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.17 Total: 9.52 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -4.07 Total: -29.18 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.00 Total: -43.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.32 -11.60 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.561 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds