Wall clock time and date at job start Tue Mar 31 2020 11:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.42155 * 2 1 4 4 C 1.38632 * 118.41789 * 180.24120 * 3 2 1 5 5 C 1.38227 * 119.16286 * 359.75349 * 4 3 2 6 6 N 1.31857 * 120.76436 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72316 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.61493 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47152 * 164.99710 * 8 7 6 10 10 N 1.46896 * 109.46997 * 44.99648 * 8 7 6 11 11 C 1.46903 * 110.99908 * 155.00060 * 10 8 7 12 12 C 1.52998 * 109.47147 * 275.00225 * 11 10 8 13 13 C 1.53009 * 109.46959 * 299.99892 * 12 11 10 14 14 C 1.52999 * 109.46672 * 300.00004 * 13 12 11 15 15 C 1.50707 * 109.46677 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00272 * 239.99559 * 15 14 13 17 17 C 1.37879 * 120.00029 * 60.00069 * 15 14 13 18 18 N 1.31514 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46987 * 60.00285 * 19 17 15 21 21 H 1.48504 * 109.47136 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47194 * 299.99680 * 19 17 15 23 23 C 1.52998 * 109.47432 * 60.00286 * 14 13 12 24 24 C 1.52995 * 109.47247 * 154.99976 * 11 10 8 25 25 C 1.53000 * 109.46912 * 284.99938 * 8 7 6 26 26 C 1.52995 * 117.50099 * 8.74495 * 25 8 7 27 27 C 1.53004 * 117.50029 * 300.08487 * 25 8 7 28 28 H 1.09002 * 109.47333 * 270.25467 * 1 2 3 29 29 H 1.09000 * 109.46732 * 30.24981 * 1 2 3 30 30 H 1.08996 * 109.47456 * 150.24810 * 1 2 3 31 31 H 1.07995 * 120.78528 * 359.97068 * 3 2 1 32 32 H 1.08000 * 120.41659 * 179.72639 * 4 3 2 33 33 H 1.07997 * 119.61622 * 180.02562 * 5 4 3 34 34 H 1.00895 * 111.00219 * 31.05155 * 10 8 7 35 35 H 1.09001 * 109.46941 * 35.00074 * 11 10 8 36 36 H 1.09000 * 109.47197 * 59.99804 * 12 11 10 37 37 H 1.08999 * 109.47517 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47026 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.46854 * 59.99780 * 13 12 11 40 40 H 1.08999 * 109.47298 * 299.99504 * 14 13 12 41 41 H 0.97005 * 119.99968 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47197 * 179.97438 * 23 14 13 43 43 H 1.09004 * 109.47100 * 59.99504 * 23 14 13 44 44 H 1.09004 * 109.47211 * 180.02562 * 24 11 10 45 45 H 1.08998 * 109.47430 * 300.00269 * 24 11 10 46 46 H 1.09003 * 115.54875 * 154.42270 * 25 8 7 47 47 H 1.08997 * 117.49775 * 0.02562 * 26 25 8 48 48 H 1.09000 * 117.49863 * 145.02467 * 26 25 8 49 49 H 1.08993 * 117.49963 * 214.98702 * 27 25 8 50 50 H 1.08999 * 117.49372 * 359.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1473 -0.0051 5 6 4.2256 -0.0825 -0.0049 6 7 3.5254 -1.1998 0.0007 7 6 2.2065 -1.1917 0.0057 8 6 1.4538 -2.4972 0.0114 9 1 0.4134 -2.3156 0.2810 10 7 2.0614 -3.4085 0.9903 11 6 1.0853 -4.3990 1.4640 12 6 0.2750 -3.8050 2.6179 13 6 1.2178 -3.4299 3.7631 14 6 1.9543 -4.6804 4.2477 15 6 2.8834 -4.3108 5.3753 16 1 3.9452 -4.4826 5.2785 17 6 2.3778 -3.7533 6.5305 18 7 1.0847 -3.5445 6.6486 19 14 3.5293 -3.2958 7.9284 20 1 4.5163 -2.2951 7.4493 21 1 2.7434 -2.7183 9.0483 22 1 4.2436 -4.5098 8.3988 23 6 2.7646 -5.2743 3.0938 24 6 1.8218 -5.6494 1.9486 25 6 1.5172 -3.1285 -1.3809 26 6 2.4496 -2.4826 -2.4076 27 6 0.9330 -2.3282 -2.5467 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8921 -0.5099 31 1 1.6890 2.1422 -0.0005 32 1 4.1737 2.0590 -0.0097 33 1 5.3046 -0.1288 -0.0084 34 1 2.4601 -2.8960 1.7625 35 1 0.4137 -4.6662 0.6482 36 1 -0.2497 -2.9142 2.2727 37 1 -0.4489 -4.5400 2.9697 38 1 0.6405 -3.0072 4.5854 39 1 1.9420 -2.6950 3.4116 40 1 1.2301 -5.4152 4.5992 41 1 0.7290 -3.1520 7.4613 42 1 3.2896 -6.1649 3.4392 43 1 3.4888 -4.5394 2.7423 44 1 1.0976 -6.3845 2.2997 45 1 2.3992 -6.0725 1.1266 46 1 1.4094 -4.2128 -1.4108 47 1 3.0182 -1.6082 -2.0911 48 1 2.9550 -3.1419 -3.1133 49 1 0.4414 -2.8859 -3.3437 50 1 0.5032 -1.3521 -2.3217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:32 Heat of formation + Delta-G solvation = 35.111061 kcal Electronic energy + Delta-G solvation = -27624.088577 eV Core-core repulsion = 24229.554622 eV Total energy + Delta-G solvation = -3394.533955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75631 -39.95099 -38.20329 -35.62220 -34.60004 -34.03061 -32.56593 -31.26836 -30.40032 -28.20406 -26.99584 -26.22731 -23.94996 -23.28469 -23.15838 -22.91135 -22.33598 -20.77170 -19.44916 -18.38617 -17.90200 -17.50751 -17.00150 -16.67769 -16.34882 -15.59148 -15.39899 -15.35332 -15.04505 -14.87520 -14.47197 -14.12886 -14.05515 -13.91664 -13.83694 -13.67298 -13.45032 -13.33160 -12.97542 -12.84029 -12.59281 -12.54535 -12.48402 -12.20711 -12.11294 -11.86742 -11.75053 -11.70664 -11.17851 -11.14018 -10.86327 -10.63145 -10.55862 -10.51138 -10.31457 -10.18512 -9.69141 -9.10088 -8.06811 -6.20037 0.17998 0.42232 1.38550 1.39522 1.47133 2.42781 2.85026 2.88169 3.18837 3.27176 3.48255 3.74010 3.96704 3.99361 4.02535 4.09768 4.16804 4.16823 4.20768 4.24279 4.35964 4.58121 4.59803 4.64140 4.68673 4.69402 4.72675 4.78771 4.80683 4.84821 4.90180 4.93567 5.02488 5.07328 5.11430 5.17370 5.25431 5.26481 5.30363 5.32132 5.34436 5.38322 5.46000 5.52221 5.64664 5.72475 5.85425 6.07724 6.20606 6.33563 6.45623 6.52743 6.92042 7.18774 7.47286 8.96287 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.004386 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.601941 B = 6382.605483 C = 7292.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 C -0.085 4.085 4 C -0.168 4.168 5 C 0.070 3.930 6 N -0.480 5.480 7 C 0.112 3.888 8 C 0.165 3.835 9 H 0.067 0.933 10 N -0.665 5.665 11 C 0.099 3.901 12 C -0.139 4.139 13 C -0.091 4.091 14 C 0.049 3.951 15 C -0.533 4.533 16 H 0.045 0.955 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.947 3.053 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.097 4.097 24 C -0.095 4.095 25 C -0.134 4.134 26 C -0.177 4.177 27 C -0.170 4.170 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.339 0.661 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.018 0.982 40 H -0.008 1.008 41 H 0.259 0.741 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 9.050 -19.072 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.110 4.110 4 C -0.188 4.188 5 C -0.087 4.087 6 N -0.189 5.189 7 C -0.025 4.025 8 C 0.055 3.945 9 H 0.084 0.916 10 N -0.297 5.297 11 C -0.011 4.011 12 C -0.178 4.178 13 C -0.130 4.130 14 C 0.030 3.970 15 C -0.572 4.572 16 H 0.063 0.937 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.773 3.227 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.153 4.153 26 C -0.214 4.214 27 C -0.207 4.207 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.010 0.990 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.128 0.872 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.417 7.888 -19.411 21.000 hybrid contribution -0.123 1.508 1.972 2.486 sum -1.540 9.396 -17.439 19.869 Atomic orbital electron populations 1.20925 0.89135 1.04370 1.02952 1.21008 0.98633 0.93596 1.01183 1.21820 0.94493 0.98552 0.96177 1.22455 0.95579 1.00074 1.00685 1.23184 1.01255 0.88028 0.96268 1.67500 1.08139 1.32286 1.10953 1.21127 0.90063 0.94599 0.96759 1.20025 0.95057 0.86911 0.92543 0.91552 1.60601 1.33039 1.18019 1.18078 1.21520 0.92159 0.92460 0.94938 1.22165 0.98518 1.00072 0.97042 1.21279 0.97010 0.98428 0.96256 1.18596 0.93455 0.92982 0.91945 1.21607 0.93826 1.40605 1.01122 0.93711 1.25673 0.96356 0.95820 1.00516 1.70007 1.12682 1.45143 1.27670 0.85792 0.79182 0.78597 0.79175 1.20024 1.20768 1.19750 1.21401 0.97876 0.98775 0.95408 1.21447 0.98199 0.96305 0.97372 1.22120 1.05560 0.98714 0.88897 1.22970 0.93152 1.03027 1.02255 1.23105 0.95687 1.01820 1.00078 0.91303 0.88970 0.90478 0.82275 0.82091 0.81568 0.84000 0.89363 0.92925 0.92674 0.92706 0.96346 0.99005 0.93210 0.94641 0.93697 0.92356 0.91330 0.87466 0.90088 0.89021 0.87206 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.93 71.24 0.64 -1.50 16 2 C -0.14 -3.29 5.76 -19.77 -0.11 -3.40 16 3 C -0.08 -1.66 9.86 22.47 0.22 -1.44 16 4 C -0.17 -3.28 10.11 22.36 0.23 -3.06 16 5 C 0.07 1.71 11.18 84.69 0.95 2.66 16 6 N -0.48 -14.50 8.50 -183.88 -1.56 -16.06 16 7 C 0.11 3.14 3.74 42.54 0.16 3.30 16 8 C 0.16 4.59 2.08 44.17 0.09 4.68 16 9 H 0.07 1.78 4.89 -2.39 -0.01 1.77 16 10 N -0.66 -22.26 5.40 -473.31 -2.56 -24.82 16 11 C 0.10 3.26 2.67 44.91 0.12 3.38 16 12 C -0.14 -5.24 5.50 30.60 0.17 -5.07 16 13 C -0.09 -4.37 4.73 30.60 0.14 -4.23 16 14 C 0.05 2.51 2.10 -11.54 -0.02 2.48 16 15 C -0.53 -30.62 8.56 25.60 0.22 -30.40 16 16 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 17 C 0.01 0.84 5.30 84.66 0.45 1.29 16 18 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 19 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.10 -4.24 4.90 30.59 0.15 -4.09 16 24 C -0.10 -3.37 5.64 30.59 0.17 -3.20 16 25 C -0.13 -3.28 5.72 -10.79 -0.06 -3.34 16 26 C -0.18 -4.22 9.57 30.62 0.29 -3.93 16 27 C -0.17 -3.30 9.95 30.62 0.30 -2.99 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.08 1.37 5.22 -2.39 -0.01 1.35 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.34 13.41 5.13 -89.70 -0.46 12.95 16 35 H 0.09 2.49 7.48 -2.39 -0.02 2.47 16 36 H 0.05 1.81 7.43 -2.39 -0.02 1.79 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 39 H 0.02 0.89 6.26 -2.39 -0.01 0.88 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 14.56 8.31 -92.70 -0.77 13.78 16 42 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 2.04 7.21 -2.38 -0.02 2.02 16 44 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.11 2.68 7.94 -2.39 -0.02 2.66 16 47 H 0.08 2.19 5.55 -2.39 -0.01 2.18 16 48 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.10 1.76 6.53 -2.39 -0.02 1.74 16 Total: -1.00 -65.30 375.55 2.72 -62.58 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.47 Total: 33.77 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 4.10 Total: -48.87 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.88 Total: -94.53 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.30 2.72 -62.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.692 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds