Wall clock time and date at job start Tue Mar 31 2020 10:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48495 * 109.46945 * 269.99803 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00072 * 3 2 1 6 6 H 1.48500 * 109.46736 * 149.99934 * 3 2 1 7 7 C 1.37882 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46665 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47815 * 300.00136 * 11 10 9 13 13 N 1.46901 * 109.47647 * 180.02562 * 12 11 10 14 14 C 1.47907 * 110.99488 * 303.23642 * 13 12 11 15 15 C 1.54605 * 102.79309 * 210.99193 * 14 13 12 16 16 H 1.08998 * 110.73717 * 143.77269 * 15 14 13 17 17 C 1.53002 * 110.74074 * 266.92447 * 15 14 13 18 18 C 1.52994 * 109.46931 * 185.00101 * 17 15 14 19 19 N 1.46905 * 109.47184 * 179.97438 * 18 17 15 20 20 C 1.51578 * 102.83077 * 25.44114 * 15 14 13 21 21 C 1.37919 * 131.55573 * 164.03038 * 20 15 14 22 22 C 1.38307 * 120.07824 * 180.25057 * 21 20 15 23 23 C 1.38302 * 119.88019 * 0.02562 * 22 21 20 24 24 C 1.37903 * 120.26828 * 359.85429 * 23 22 21 25 25 C 1.38957 * 107.95664 * 344.04523 * 20 15 14 26 26 C 1.52994 * 109.47036 * 59.99964 * 12 11 10 27 27 C 1.53000 * 109.47267 * 300.00333 * 26 12 11 28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47071 * 60.00288 * 9 7 2 30 30 H 1.09005 * 109.46754 * 60.00141 * 10 9 7 31 31 H 1.08991 * 109.47223 * 299.99884 * 10 9 7 32 32 H 1.09004 * 109.47181 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47671 * 60.00574 * 11 10 9 34 34 H 1.09011 * 109.46824 * 300.00308 * 12 11 10 35 35 H 1.09003 * 110.78293 * 92.61667 * 14 13 12 36 36 H 1.08991 * 110.77980 * 329.36863 * 14 13 12 37 37 H 1.08997 * 109.46842 * 304.99733 * 17 15 14 38 38 H 1.08995 * 109.47418 * 64.99955 * 17 15 14 39 39 H 1.09000 * 109.47340 * 299.99952 * 18 17 15 40 40 H 1.09008 * 109.47435 * 59.99968 * 18 17 15 41 41 H 1.00900 * 110.99722 * 56.04162 * 19 18 17 42 42 H 1.00891 * 111.00071 * 179.97438 * 19 18 17 43 43 H 1.08001 * 119.96506 * 0.26370 * 21 20 15 44 44 H 1.07995 * 120.05534 * 180.02562 * 22 21 20 45 45 H 1.08007 * 119.86418 * 179.87925 * 23 22 21 46 46 H 1.08003 * 119.90066 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.47362 * 60.00434 * 26 12 11 48 48 H 1.09001 * 109.47629 * 180.02562 * 26 12 11 49 49 H 1.08997 * 109.47020 * 299.99850 * 27 26 12 50 50 H 1.09004 * 109.47601 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 0.6008 -5.0678 1.2496 13 7 -0.1333 -6.3403 1.2505 14 6 -0.9371 -6.4892 0.0178 15 6 -2.1457 -7.3262 0.4963 16 1 -3.0577 -7.0126 -0.0117 17 6 -1.8917 -8.8190 0.2772 18 6 -3.1496 -9.6093 0.6430 19 7 -2.9060 -11.0426 0.4321 20 6 -2.2161 -7.0010 1.9751 21 6 -3.2167 -7.1863 2.9060 22 6 -3.0261 -6.7891 4.2170 23 6 -1.8301 -6.2051 4.5930 24 6 -0.8255 -6.0199 3.6666 25 6 -1.0088 -6.4202 2.3439 26 6 -0.3933 -3.9049 1.2496 27 6 0.3717 -2.5799 1.2490 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6045 -0.8904 32 1 2.1884 -5.8157 0.0006 33 1 0.8532 -5.0452 -0.8897 34 1 1.2278 -5.0099 2.1394 35 1 -0.3753 -7.0240 -0.7480 36 1 -1.2622 -5.5167 -0.3516 37 1 -1.6433 -8.9955 -0.7693 38 1 -1.0632 -9.1429 0.9070 39 1 -3.3982 -9.4328 1.6895 40 1 -3.9783 -9.2855 0.0131 41 1 -2.1016 -11.3535 0.9558 42 1 -3.7225 -11.5866 0.6672 43 1 -4.1503 -7.6422 2.6110 44 1 -3.8097 -6.9347 4.9457 45 1 -1.6822 -5.8933 5.6165 46 1 0.1060 -5.5629 3.9667 47 1 -1.0203 -3.9628 0.3598 48 1 -1.0195 -3.9621 2.1400 49 1 0.9986 -2.5220 2.1388 50 1 -0.3366 -1.7513 1.2486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:34 Heat of formation + Delta-G solvation = 14.165494 kcal Electronic energy + Delta-G solvation = -27165.508849 eV Core-core repulsion = 23770.066626 eV Total energy + Delta-G solvation = -3395.442223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10698 -37.90292 -36.50731 -35.37069 -33.20112 -32.07975 -29.99294 -29.77315 -29.57289 -28.26186 -26.74430 -24.37749 -22.93683 -22.21428 -21.88470 -21.66174 -20.45204 -19.85627 -18.45209 -16.65474 -16.33505 -16.12988 -15.89895 -15.42987 -15.20461 -14.71757 -14.54783 -14.16641 -13.85562 -13.72422 -13.40613 -13.25629 -12.82713 -12.76844 -12.43016 -12.19110 -12.13441 -11.97994 -11.80376 -11.41597 -11.27768 -11.20106 -11.02045 -10.84089 -10.74840 -10.54933 -10.46405 -10.38840 -10.19729 -10.15931 -9.47013 -9.35607 -8.96575 -8.90819 -8.72794 -8.64225 -8.30341 -7.46626 -5.97787 -4.04005 1.47202 1.51762 3.30010 3.37006 3.40118 3.72515 4.05672 4.26978 4.43934 4.54634 4.62721 4.89488 5.04634 5.09392 5.19802 5.23167 5.27852 5.33157 5.39758 5.45974 5.49551 5.56713 5.61507 5.77317 5.79852 5.82560 5.88344 5.97424 6.01182 6.09026 6.20449 6.22163 6.34496 6.37577 6.44350 6.52135 6.59363 6.63421 6.66832 6.74729 6.82884 6.86056 6.94395 7.08026 7.15597 7.19741 7.26406 7.43381 7.51795 7.75058 8.00860 8.15147 8.47385 9.00190 9.60733 11.07579 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.003347 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.501059 B = 8363.080939 C = 9012.153430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.108 4.108 12 C 0.082 3.918 13 N -0.474 5.474 14 C 0.045 3.955 15 C -0.050 4.050 16 H 0.083 0.917 17 C -0.099 4.099 18 C 0.059 3.941 19 N -0.853 5.853 20 C -0.141 4.141 21 C -0.081 4.081 22 C -0.156 4.156 23 C -0.094 4.094 24 C -0.138 4.138 25 C 0.120 3.880 26 C -0.143 4.143 27 C -0.104 4.104 28 H 0.259 0.741 29 H 0.023 0.977 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.340 0.660 42 H 0.339 0.661 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.033 0.967 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -17.782 5.059 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.145 4.145 11 C -0.146 4.146 12 C -0.023 4.023 13 N -0.186 5.186 14 C -0.081 4.081 15 C -0.069 4.069 16 H 0.102 0.898 17 C -0.137 4.137 18 C -0.072 4.072 19 N -0.382 5.382 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.175 4.175 23 C -0.113 4.113 24 C -0.159 4.159 25 C 0.021 3.979 26 C -0.181 4.181 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.501 -17.838 4.231 19.451 hybrid contribution -0.213 1.455 1.121 1.849 sum -6.713 -16.382 5.352 18.496 Atomic orbital electron populations 1.69873 1.05846 1.26276 1.50964 1.24968 0.94828 0.98993 0.95221 0.86653 0.79917 0.83727 0.78055 1.20758 1.21306 1.19983 1.21231 0.92877 0.90751 1.50205 0.92798 1.18655 0.92584 0.91575 0.94124 1.21612 0.98633 0.93940 1.00327 1.21630 0.98100 0.98804 0.96076 1.21989 0.95155 0.85158 1.00034 1.60865 1.23417 1.33383 1.00938 1.23335 0.92278 1.00139 0.92299 1.20855 0.98807 0.95413 0.91836 0.89849 1.21472 0.97509 0.92380 1.02321 1.21871 0.98348 0.87888 0.99085 1.58738 1.09576 1.04100 1.65777 1.20420 0.94210 1.04042 0.95697 1.20306 0.97670 0.99476 0.92534 1.20882 0.97948 1.02842 0.95864 1.20835 0.93249 0.98273 0.98894 1.20500 1.00362 1.03668 0.91371 1.19691 0.90505 0.95414 0.92283 1.22260 0.98049 0.97360 1.00460 1.21550 0.99459 0.94410 0.98795 0.93112 0.95856 0.93334 0.93149 0.92789 0.92453 0.90100 0.89016 0.90936 0.90776 0.91561 0.95071 0.91276 0.84819 0.84934 0.86789 0.86397 0.86114 0.86240 0.92695 0.93389 0.94827 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.17 5.14 -26.73 -0.14 -2.30 16 11 C -0.11 -1.85 5.04 -26.73 -0.13 -1.99 16 12 C 0.08 1.39 2.05 -67.72 -0.14 1.25 16 13 N -0.47 -7.15 5.11 -161.41 -0.82 -7.98 16 14 C 0.05 0.62 4.79 -2.43 -0.01 0.61 16 15 C -0.05 -0.59 3.05 -90.50 -0.28 -0.87 16 16 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 17 C -0.10 -1.04 4.91 -26.73 -0.13 -1.17 16 18 C 0.06 0.54 6.66 -3.82 -0.03 0.51 16 19 N -0.85 -7.16 9.62 -10.37 -0.10 -7.26 16 20 C -0.14 -1.87 5.27 -104.04 -0.55 -2.41 16 21 C -0.08 -0.97 8.99 -39.67 -0.36 -1.33 16 22 C -0.16 -1.81 10.06 -39.53 -0.40 -2.21 16 23 C -0.09 -1.16 10.02 -39.68 -0.40 -1.56 16 24 C -0.14 -1.97 8.67 -39.27 -0.34 -2.31 16 25 C 0.12 1.79 4.78 -83.28 -0.40 1.39 16 26 C -0.14 -2.73 4.63 -26.73 -0.12 -2.86 16 27 C -0.10 -2.39 4.98 -26.73 -0.13 -2.52 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.97 6.97 -51.93 -0.36 0.61 16 34 H 0.08 1.41 7.49 -51.92 -0.39 1.02 16 35 H 0.09 1.15 7.88 -51.93 -0.41 0.74 16 36 H 0.07 1.08 5.58 -51.93 -0.29 0.79 16 37 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 38 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.03 0.29 6.24 -51.93 -0.32 -0.03 16 40 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.34 2.63 8.99 -39.29 -0.35 2.28 16 42 H 0.34 2.25 9.08 -39.30 -0.36 1.89 16 43 H 0.11 1.13 7.52 -52.49 -0.39 0.73 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.68 7.49 -52.48 -0.39 1.29 16 47 H 0.05 1.08 6.14 -51.93 -0.32 0.77 16 48 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 49 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -28.47 373.23 -12.26 -40.73 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.43 Total: 6.72 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -4.13 Total: -29.41 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.30 Total: -39.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.47 -12.26 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.895 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds