Wall clock time and date at job start Tue Mar 31 2020 10:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48495 * 109.46945 * 269.99803 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00072 * 3 2 1 6 6 H 1.48500 * 109.46736 * 149.99934 * 3 2 1 7 7 C 1.37882 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46665 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47815 * 300.00136 * 11 10 9 13 13 N 1.46901 * 109.47647 * 180.02562 * 12 11 10 14 14 C 1.47907 * 110.99488 * 303.23642 * 13 12 11 15 15 C 1.54605 * 102.79309 * 210.99193 * 14 13 12 16 16 H 1.08998 * 110.73717 * 143.77269 * 15 14 13 17 17 C 1.53002 * 110.74074 * 266.92447 * 15 14 13 18 18 C 1.52994 * 109.46931 * 185.00101 * 17 15 14 19 19 N 1.46905 * 109.47184 * 179.97438 * 18 17 15 20 20 C 1.51578 * 102.83077 * 25.44114 * 15 14 13 21 21 C 1.37919 * 131.55573 * 164.03038 * 20 15 14 22 22 C 1.38307 * 120.07824 * 180.25057 * 21 20 15 23 23 C 1.38302 * 119.88019 * 0.02562 * 22 21 20 24 24 C 1.37903 * 120.26828 * 359.85429 * 23 22 21 25 25 C 1.38957 * 107.95664 * 344.04523 * 20 15 14 26 26 C 1.52994 * 109.47036 * 59.99964 * 12 11 10 27 27 C 1.53000 * 109.47267 * 300.00333 * 26 12 11 28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47071 * 60.00288 * 9 7 2 30 30 H 1.09005 * 109.46754 * 60.00141 * 10 9 7 31 31 H 1.08991 * 109.47223 * 299.99884 * 10 9 7 32 32 H 1.09004 * 109.47181 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47671 * 60.00574 * 11 10 9 34 34 H 1.09011 * 109.46824 * 300.00308 * 12 11 10 35 35 H 1.09003 * 110.78293 * 92.61667 * 14 13 12 36 36 H 1.08991 * 110.77980 * 329.36863 * 14 13 12 37 37 H 1.08997 * 109.46842 * 304.99733 * 17 15 14 38 38 H 1.08995 * 109.47418 * 64.99955 * 17 15 14 39 39 H 1.09000 * 109.47340 * 299.99952 * 18 17 15 40 40 H 1.09008 * 109.47435 * 59.99968 * 18 17 15 41 41 H 1.00900 * 110.99722 * 56.04162 * 19 18 17 42 42 H 1.00891 * 111.00071 * 179.97438 * 19 18 17 43 43 H 1.08001 * 119.96506 * 0.26370 * 21 20 15 44 44 H 1.07995 * 120.05534 * 180.02562 * 22 21 20 45 45 H 1.08007 * 119.86418 * 179.87925 * 23 22 21 46 46 H 1.08003 * 119.90066 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.47362 * 60.00434 * 26 12 11 48 48 H 1.09001 * 109.47629 * 180.02562 * 26 12 11 49 49 H 1.08997 * 109.47020 * 299.99850 * 27 26 12 50 50 H 1.09004 * 109.47601 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 0.6008 -5.0678 1.2496 13 7 -0.1333 -6.3403 1.2505 14 6 -0.9371 -6.4892 0.0178 15 6 -2.1457 -7.3262 0.4963 16 1 -3.0577 -7.0126 -0.0117 17 6 -1.8917 -8.8190 0.2772 18 6 -3.1496 -9.6093 0.6430 19 7 -2.9060 -11.0426 0.4321 20 6 -2.2161 -7.0010 1.9751 21 6 -3.2167 -7.1863 2.9060 22 6 -3.0261 -6.7891 4.2170 23 6 -1.8301 -6.2051 4.5930 24 6 -0.8255 -6.0199 3.6666 25 6 -1.0088 -6.4202 2.3439 26 6 -0.3933 -3.9049 1.2496 27 6 0.3717 -2.5799 1.2490 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6045 -0.8904 32 1 2.1884 -5.8157 0.0006 33 1 0.8532 -5.0452 -0.8897 34 1 1.2278 -5.0099 2.1394 35 1 -0.3753 -7.0240 -0.7480 36 1 -1.2622 -5.5167 -0.3516 37 1 -1.6433 -8.9955 -0.7693 38 1 -1.0632 -9.1429 0.9070 39 1 -3.3982 -9.4328 1.6895 40 1 -3.9783 -9.2855 0.0131 41 1 -2.1016 -11.3535 0.9558 42 1 -3.7225 -11.5866 0.6672 43 1 -4.1503 -7.6422 2.6110 44 1 -3.8097 -6.9347 4.9457 45 1 -1.6822 -5.8933 5.6165 46 1 0.1060 -5.5629 3.9667 47 1 -1.0203 -3.9628 0.3598 48 1 -1.0195 -3.9621 2.1400 49 1 0.9986 -2.5220 2.1388 50 1 -0.3366 -1.7513 1.2486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:33 Heat of formation + Delta-G solvation = -1.605476 kcal Electronic energy + Delta-G solvation = -27166.192730 eV Core-core repulsion = 23770.066626 eV Total energy + Delta-G solvation = -3396.126104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21462 -39.31268 -37.50086 -36.51184 -34.71808 -33.47255 -31.48497 -31.18021 -30.60913 -29.54986 -27.89899 -26.16306 -23.91608 -23.41177 -23.22909 -22.93419 -21.43453 -21.36455 -19.96443 -18.41194 -17.71435 -16.98967 -16.92112 -16.61302 -16.34051 -16.09303 -15.77267 -15.35388 -15.03091 -14.91031 -14.71573 -14.66447 -14.29263 -14.09665 -13.76799 -13.46816 -13.22045 -13.14937 -12.99248 -12.94333 -12.84822 -12.57126 -12.37603 -12.28226 -12.06459 -12.04228 -11.93979 -11.79052 -11.73300 -11.44350 -11.19567 -10.90824 -10.66946 -10.51842 -10.33618 -9.72532 -9.53570 -8.59291 -8.07963 -6.22250 0.48719 0.50941 1.39311 1.40339 1.50159 2.42414 2.67157 3.01291 3.18001 3.46150 3.53068 3.73713 3.83104 3.98276 4.06583 4.15099 4.20466 4.29608 4.37651 4.38135 4.44715 4.48550 4.52642 4.59238 4.68399 4.69688 4.74924 4.76144 4.80605 4.87014 4.91954 4.96857 5.00886 5.09897 5.14004 5.17945 5.32492 5.33535 5.34943 5.39888 5.46996 5.57563 5.60906 5.65170 5.66641 5.86005 6.01164 6.07501 6.17345 6.24149 6.34495 6.40569 6.60535 6.90447 7.45847 8.95332 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.003347 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.501059 B = 8363.080939 C = 9012.153430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.048 3.952 10 C -0.100 4.100 11 C -0.099 4.099 12 C 0.094 3.906 13 N -0.471 5.471 14 C 0.041 3.959 15 C -0.043 4.043 16 H 0.093 0.907 17 C -0.089 4.089 18 C 0.064 3.936 19 N -0.859 5.859 20 C -0.145 4.145 21 C -0.085 4.085 22 C -0.151 4.151 23 C -0.101 4.101 24 C -0.157 4.157 25 C 0.089 3.911 26 C -0.125 4.125 27 C -0.094 4.094 28 H 0.259 0.741 29 H -0.008 1.008 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.343 0.657 42 H 0.350 0.650 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.112 0.888 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.026 0.974 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -19.407 5.647 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.012 4.012 13 N -0.184 5.184 14 C -0.084 4.084 15 C -0.062 4.062 16 H 0.111 0.889 17 C -0.127 4.127 18 C -0.067 4.067 19 N -0.389 5.389 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.170 4.170 23 C -0.119 4.119 24 C -0.177 4.177 25 C -0.009 4.009 26 C -0.164 4.164 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.130 0.870 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.143 -19.485 4.826 21.307 hybrid contribution -0.080 1.954 0.980 2.188 sum -7.223 -17.531 5.806 19.830 Atomic orbital electron populations 1.70021 1.07132 1.26929 1.51563 1.25733 0.95643 1.02308 0.94974 0.85674 0.78809 0.79697 0.78202 1.20177 1.21022 1.19316 1.21631 0.93041 0.92344 1.50174 0.93045 1.18608 0.92988 0.92399 0.93074 1.21473 0.97891 0.94041 1.00381 1.21519 0.98257 0.97595 0.96272 1.21726 0.94521 0.85359 0.99629 1.60917 1.24143 1.31607 1.01729 1.23408 0.93189 0.99753 0.92090 1.20840 0.98276 0.96002 0.91111 0.88914 1.21357 0.97805 0.91458 1.02053 1.21781 0.97567 0.88186 0.99146 1.58717 1.10357 1.03834 1.66037 1.20656 0.93946 1.03681 0.96525 1.20645 0.98176 0.99031 0.92464 1.21284 0.98134 1.01225 0.96377 1.21142 0.93138 0.98056 0.99592 1.20662 1.00872 1.04383 0.91825 1.19884 0.91437 0.97188 0.92387 1.22034 0.98056 0.96335 0.99985 1.21318 0.98634 0.95420 0.97920 0.93195 0.98965 0.93323 0.92984 0.90533 0.92284 0.90588 0.87891 0.92727 0.90671 0.92854 0.94992 0.90855 0.84443 0.83725 0.84395 0.83529 0.84112 0.87007 0.93541 0.93391 0.95565 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 2 C 0.01 0.66 5.30 84.66 0.45 1.11 16 3 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.53 -29.68 8.56 25.60 0.22 -29.46 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.39 2.10 -11.54 -0.02 2.37 16 10 C -0.10 -4.07 5.14 30.59 0.16 -3.91 16 11 C -0.10 -3.33 5.04 30.59 0.15 -3.18 16 12 C 0.09 3.18 2.05 44.91 0.09 3.27 16 13 N -0.47 -13.99 5.11 -664.57 -3.40 -17.38 16 14 C 0.04 1.10 4.79 86.66 0.41 1.51 16 15 C -0.04 -0.96 3.05 -10.71 -0.03 -0.99 16 16 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 17 C -0.09 -1.71 4.91 30.59 0.15 -1.56 16 18 C 0.06 1.02 6.66 86.30 0.58 1.60 16 19 N -0.86 -12.55 9.62 -186.71 -1.80 -14.34 16 20 C -0.15 -3.63 5.27 -19.49 -0.10 -3.74 16 21 C -0.08 -1.80 8.99 22.21 0.20 -1.60 16 22 C -0.15 -3.09 10.06 22.30 0.22 -2.87 16 23 C -0.10 -2.33 10.02 22.21 0.22 -2.11 16 24 C -0.16 -4.40 8.67 22.47 0.19 -4.21 16 25 C 0.09 2.60 4.78 38.24 0.18 2.78 16 26 C -0.13 -4.94 4.63 30.59 0.14 -4.80 16 27 C -0.09 -4.52 4.98 30.60 0.15 -4.37 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.06 1.98 6.97 -2.39 -0.02 1.96 16 34 H 0.08 2.66 7.49 -2.38 -0.02 2.64 16 35 H 0.10 2.46 7.88 -2.39 -0.02 2.44 16 36 H 0.05 1.64 5.58 -2.39 -0.01 1.63 16 37 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 38 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 39 H 0.03 0.51 6.24 -2.39 -0.01 0.50 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.34 4.66 8.99 -89.69 -0.81 3.85 16 42 H 0.35 3.83 9.08 -89.70 -0.81 3.02 16 43 H 0.14 2.24 7.52 -2.91 -0.02 2.21 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.11 3.20 7.49 -2.91 -0.02 3.18 16 47 H 0.05 1.90 6.14 -2.39 -0.01 1.88 16 48 H 0.05 1.87 6.47 -2.39 -0.02 1.85 16 49 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.06 3.10 6.07 -2.38 -0.01 3.08 16 Total: -1.00 -62.36 373.23 -0.24 -62.60 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.68 Total: 26.51 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 3.37 Total: -50.15 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -4.95 Total: -85.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.36 -0.24 -62.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.995 kcal (2) G-P(sol) polarization free energy of solvation -62.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds