Wall clock time and date at job start Tue Mar 31 2020 11:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47344 * 269.99982 * 3 2 1 5 5 H 1.48494 * 109.47394 * 30.00057 * 3 2 1 6 6 H 1.48499 * 109.47410 * 150.00018 * 3 2 1 7 7 C 1.37877 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47433 * 299.99984 * 10 9 7 12 12 C 1.53002 * 109.46749 * 299.99967 * 11 10 9 13 13 N 1.46898 * 109.47146 * 179.97438 * 12 11 10 14 14 C 1.46961 * 110.99861 * 174.99687 * 13 12 11 15 15 C 1.53049 * 109.36181 * 183.18775 * 14 13 12 16 16 N 1.46965 * 109.36659 * 301.60325 * 15 14 13 17 17 C 1.39677 * 110.99759 * 183.18867 * 16 15 14 18 18 C 1.38912 * 120.07048 * 179.97438 * 17 16 15 19 19 C 1.38099 * 119.92393 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.07607 * 0.02562 * 19 18 17 21 21 C 1.38288 * 120.14912 * 359.97438 * 20 19 18 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 20 19 23 23 C 1.46955 * 110.87927 * 59.32047 * 16 15 14 24 24 C 1.46950 * 111.00121 * 298.80098 * 13 12 11 25 25 C 1.53000 * 109.47126 * 59.99845 * 12 11 10 26 26 C 1.52994 * 109.47494 * 59.99616 * 9 7 2 27 27 H 0.97003 * 120.00065 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46549 * 299.99256 * 9 7 2 29 29 H 1.08999 * 109.47158 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.46974 * 59.99743 * 10 9 7 31 31 H 1.09001 * 109.47208 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47292 * 59.99662 * 11 10 9 33 33 H 1.08999 * 109.46974 * 299.99889 * 12 11 10 34 34 H 1.08998 * 109.48396 * 63.22463 * 14 13 12 35 35 H 1.08991 * 109.50693 * 303.16593 * 14 13 12 36 36 H 1.09002 * 109.49137 * 181.63280 * 15 14 13 37 37 H 1.09006 * 109.50815 * 61.57861 * 15 14 13 38 38 H 1.08001 * 120.03609 * 0.02562 * 18 17 16 39 39 H 1.07995 * 119.96581 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.92755 * 179.72532 * 20 19 18 41 41 H 1.07997 * 119.96260 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.03841 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.48950 * 60.64738 * 23 16 15 44 44 H 1.09000 * 109.48705 * 180.71100 * 23 16 15 45 45 H 1.08998 * 109.48829 * 296.77675 * 24 13 12 46 46 H 1.09002 * 109.48906 * 56.83876 * 24 13 12 47 47 H 1.08999 * 109.47158 * 60.00157 * 25 12 11 48 48 H 1.09004 * 109.46974 * 179.97438 * 25 12 11 49 49 H 1.08999 * 109.47528 * 180.02562 * 26 9 7 50 50 H 1.09001 * 109.46990 * 300.00217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 3.1249 -3.5810 -1.2487 12 6 2.2452 -3.6621 -2.4979 13 7 3.0896 -3.5838 -3.6974 14 6 2.2921 -3.7774 -4.9165 15 6 3.2178 -3.7681 -6.1352 16 7 3.9473 -2.4932 -6.1834 17 6 4.7502 -2.4188 -7.3239 18 6 5.5238 -1.2890 -7.5580 19 6 6.3161 -1.2184 -8.6869 20 6 6.3396 -2.2705 -9.5840 21 6 5.5707 -3.3967 -9.3540 22 6 4.7760 -3.4739 -8.2271 23 6 4.7447 -2.2997 -4.9643 24 6 3.8190 -2.3090 -3.7456 25 6 1.2509 -2.4992 -2.4979 26 6 0.3718 -2.5805 -1.2489 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5566 0.8904 29 1 1.7002 -4.6060 0.0010 30 1 2.8719 -3.6042 0.8905 31 1 3.8329 -4.4098 -1.2489 32 1 3.6699 -2.6371 -1.2488 33 1 1.7002 -4.6061 -2.4978 34 1 1.5641 -2.9712 -5.0066 35 1 1.7713 -4.7334 -4.8626 36 1 2.6252 -3.8826 -7.0429 37 1 3.9286 -4.5911 -6.0588 38 1 5.5056 -0.4668 -6.8579 39 1 6.9175 -0.3402 -8.8697 40 1 6.9567 -2.2109 -10.4683 41 1 5.5910 -4.2164 -10.0569 42 1 4.1761 -4.3538 -8.0479 43 1 5.4728 -3.1059 -4.8742 44 1 5.2653 -1.3436 -5.0183 45 1 3.1084 -1.4861 -3.8224 46 1 4.4116 -2.1945 -2.8379 47 1 1.7959 -1.5553 -2.4980 48 1 0.6245 -2.5568 -3.3881 49 1 -0.1736 -3.5242 -1.2487 50 1 -0.3365 -1.7520 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:13 Heat of formation + Delta-G solvation = 33.765915 kcal Electronic energy + Delta-G solvation = -27223.867229 eV Core-core repulsion = 23829.274944 eV Total energy + Delta-G solvation = -3394.592285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47565 -38.93551 -37.11082 -34.75032 -32.20712 -31.65710 -30.49840 -30.19049 -29.51011 -28.13767 -25.65832 -24.57832 -24.06365 -22.13068 -21.88771 -21.42337 -20.56941 -19.38084 -18.33727 -17.76201 -15.94498 -15.79230 -15.54244 -15.42051 -14.80707 -14.65418 -14.47329 -14.19844 -14.09723 -13.72718 -13.55331 -13.48684 -13.13031 -12.73934 -12.60696 -12.18780 -11.72080 -11.71467 -11.53302 -11.40548 -11.24679 -11.13853 -10.99297 -10.85225 -10.77258 -10.67560 -10.55125 -10.13890 -9.93019 -9.75711 -9.68338 -9.15721 -9.05119 -8.93122 -8.63653 -8.28760 -7.88786 -7.73780 -5.95525 -3.99917 1.28352 1.29887 3.29455 3.37456 3.39456 3.53656 3.84508 4.22279 4.44836 4.70660 4.83711 4.89957 5.01431 5.10960 5.19729 5.30436 5.34911 5.36352 5.46770 5.49668 5.53136 5.61384 5.67657 5.76610 5.80123 5.89838 5.97940 6.06476 6.14466 6.20533 6.23504 6.30140 6.34782 6.44028 6.45903 6.53394 6.54637 6.68110 6.75317 6.78257 6.87842 6.95445 7.08451 7.16431 7.24735 7.36836 7.49102 7.51892 7.61733 7.76652 7.96440 8.17791 8.50523 9.02612 9.63250 11.10235 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.003552 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.680940 B = 7880.364446 C = 8857.452809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.499 4.499 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.097 4.097 12 C 0.091 3.909 13 N -0.535 5.535 14 C 0.052 3.948 15 C 0.057 3.943 16 N -0.491 5.491 17 C 0.121 3.879 18 C -0.143 4.143 19 C -0.096 4.096 20 C -0.155 4.155 21 C -0.095 4.095 22 C -0.174 4.174 23 C 0.064 3.936 24 C 0.049 3.951 25 C -0.129 4.129 26 C -0.104 4.104 27 H 0.258 0.742 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.012 0.988 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -7.015 -15.695 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.016 4.016 13 N -0.259 5.259 14 C -0.077 4.077 15 C -0.070 4.070 16 N -0.205 5.205 17 C 0.022 3.978 18 C -0.164 4.164 19 C -0.114 4.114 20 C -0.174 4.174 21 C -0.114 4.114 22 C -0.195 4.195 23 C -0.062 4.062 24 C -0.079 4.079 25 C -0.167 4.167 26 C -0.142 4.142 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.049 0.951 49 H 0.031 0.969 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.198 -6.904 -15.590 19.373 hybrid contribution 0.221 1.131 -0.142 1.161 sum 9.419 -5.772 -15.732 19.224 Atomic orbital electron populations 1.69865 1.05823 1.26119 1.51196 1.24927 0.94730 0.98730 0.95528 0.86768 0.80040 0.84225 0.78053 1.20810 1.21364 1.19974 1.21132 0.92633 0.90429 1.49578 0.92782 1.18690 0.92711 0.92132 0.93989 1.21546 0.98270 0.98578 0.96050 1.21455 0.97323 1.01087 0.93564 1.21724 0.92910 0.98349 0.88638 1.62512 1.28286 1.32898 1.02201 1.22145 0.94887 1.01530 0.89092 1.22349 0.96841 0.89047 0.98787 1.59203 1.25988 1.33653 1.01692 1.19056 0.92183 0.93810 0.92701 1.20840 0.98902 0.97479 0.99151 1.20999 0.98128 0.98415 0.93896 1.21026 1.01527 0.94674 1.00177 1.20981 0.95852 0.97810 0.96711 1.21328 1.02817 0.98247 0.97149 1.22356 0.94740 1.01541 0.87516 1.22250 0.96976 0.91755 0.96946 1.21973 0.97779 0.99249 0.97748 1.21443 0.98667 0.99244 0.94889 0.93203 0.95867 0.94845 0.93460 0.93876 0.91146 0.91435 0.93387 0.90357 0.90108 0.92983 0.85776 0.86101 0.86469 0.86310 0.85617 0.93251 0.90009 0.92854 0.89201 0.90724 0.95076 0.96911 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -12.97 6.61 -34.44 -0.23 -13.20 16 8 H 0.05 1.40 6.71 -52.49 -0.35 1.04 16 9 C 0.04 1.04 2.59 -91.78 -0.24 0.80 16 10 C -0.11 -2.15 5.41 -26.73 -0.14 -2.30 16 11 C -0.10 -1.78 4.78 -26.73 -0.13 -1.91 16 12 C 0.09 1.61 2.23 -67.71 -0.15 1.46 16 13 N -0.54 -8.35 4.70 -226.50 -1.06 -9.42 16 14 C 0.05 0.73 5.25 -3.77 -0.02 0.71 16 15 C 0.06 0.70 4.30 -3.76 -0.02 0.68 16 16 N -0.49 -6.57 4.75 -170.95 -0.81 -7.38 16 17 C 0.12 1.51 5.64 -83.79 -0.47 1.04 16 18 C -0.14 -1.68 9.19 -39.38 -0.36 -2.04 16 19 C -0.10 -0.97 10.04 -39.62 -0.40 -1.37 16 20 C -0.15 -1.48 10.04 -39.55 -0.40 -1.88 16 21 C -0.09 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.17 -1.94 8.82 -39.38 -0.35 -2.29 16 23 C 0.06 0.86 5.38 -3.77 -0.02 0.84 16 24 C 0.05 0.77 4.81 -3.77 -0.02 0.75 16 25 C -0.13 -2.62 4.28 -26.75 -0.11 -2.73 16 26 C -0.10 -2.39 5.23 -26.76 -0.14 -2.53 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.39 4.83 -51.93 -0.25 1.14 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.05 0.75 6.59 -51.93 -0.34 0.41 16 35 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.08 0.89 7.17 -51.93 -0.37 0.52 16 37 H 0.05 0.63 7.58 -51.93 -0.39 0.23 16 38 H 0.12 1.39 7.19 -52.49 -0.38 1.02 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.13 1.25 5.81 -52.49 -0.31 0.95 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.02 6.82 -51.93 -0.35 0.67 16 45 H 0.05 0.95 6.46 -51.93 -0.34 0.62 16 46 H 0.09 1.45 6.17 -51.93 -0.32 1.13 16 47 H 0.07 1.70 5.53 -51.93 -0.29 1.41 16 48 H 0.03 0.60 6.59 -51.93 -0.34 0.26 16 49 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -27.54 362.67 -12.62 -40.17 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.13 Total: 3.37 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.69 Total: -23.75 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -1.25 Total: -41.17 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.54 -12.62 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.932 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds