Wall clock time and date at job start Tue Mar 31 2020 11:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47344 * 269.99982 * 3 2 1 5 5 H 1.48494 * 109.47394 * 30.00057 * 3 2 1 6 6 H 1.48499 * 109.47410 * 150.00018 * 3 2 1 7 7 C 1.37877 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47433 * 299.99984 * 10 9 7 12 12 C 1.53002 * 109.46749 * 299.99967 * 11 10 9 13 13 N 1.46898 * 109.47146 * 179.97438 * 12 11 10 14 14 C 1.46961 * 110.99861 * 174.99687 * 13 12 11 15 15 C 1.53049 * 109.36181 * 183.18775 * 14 13 12 16 16 N 1.46965 * 109.36659 * 301.60325 * 15 14 13 17 17 C 1.39677 * 110.99759 * 183.18867 * 16 15 14 18 18 C 1.38912 * 120.07048 * 179.97438 * 17 16 15 19 19 C 1.38099 * 119.92393 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.07607 * 0.02562 * 19 18 17 21 21 C 1.38288 * 120.14912 * 359.97438 * 20 19 18 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 20 19 23 23 C 1.46955 * 110.87927 * 59.32047 * 16 15 14 24 24 C 1.46950 * 111.00121 * 298.80098 * 13 12 11 25 25 C 1.53000 * 109.47126 * 59.99845 * 12 11 10 26 26 C 1.52994 * 109.47494 * 59.99616 * 9 7 2 27 27 H 0.97003 * 120.00065 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46549 * 299.99256 * 9 7 2 29 29 H 1.08999 * 109.47158 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.46974 * 59.99743 * 10 9 7 31 31 H 1.09001 * 109.47208 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47292 * 59.99662 * 11 10 9 33 33 H 1.08999 * 109.46974 * 299.99889 * 12 11 10 34 34 H 1.08998 * 109.48396 * 63.22463 * 14 13 12 35 35 H 1.08991 * 109.50693 * 303.16593 * 14 13 12 36 36 H 1.09002 * 109.49137 * 181.63280 * 15 14 13 37 37 H 1.09006 * 109.50815 * 61.57861 * 15 14 13 38 38 H 1.08001 * 120.03609 * 0.02562 * 18 17 16 39 39 H 1.07995 * 119.96581 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.92755 * 179.72532 * 20 19 18 41 41 H 1.07997 * 119.96260 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.03841 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.48950 * 60.64738 * 23 16 15 44 44 H 1.09000 * 109.48705 * 180.71100 * 23 16 15 45 45 H 1.08998 * 109.48829 * 296.77675 * 24 13 12 46 46 H 1.09002 * 109.48906 * 56.83876 * 24 13 12 47 47 H 1.08999 * 109.47158 * 60.00157 * 25 12 11 48 48 H 1.09004 * 109.46974 * 179.97438 * 25 12 11 49 49 H 1.08999 * 109.47528 * 180.02562 * 26 9 7 50 50 H 1.09001 * 109.46990 * 300.00217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 3.1249 -3.5810 -1.2487 12 6 2.2452 -3.6621 -2.4979 13 7 3.0896 -3.5838 -3.6974 14 6 2.2921 -3.7774 -4.9165 15 6 3.2178 -3.7681 -6.1352 16 7 3.9473 -2.4932 -6.1834 17 6 4.7502 -2.4188 -7.3239 18 6 5.5238 -1.2890 -7.5580 19 6 6.3161 -1.2184 -8.6869 20 6 6.3396 -2.2705 -9.5840 21 6 5.5707 -3.3967 -9.3540 22 6 4.7760 -3.4739 -8.2271 23 6 4.7447 -2.2997 -4.9643 24 6 3.8190 -2.3090 -3.7456 25 6 1.2509 -2.4992 -2.4979 26 6 0.3718 -2.5805 -1.2489 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5566 0.8904 29 1 1.7002 -4.6060 0.0010 30 1 2.8719 -3.6042 0.8905 31 1 3.8329 -4.4098 -1.2489 32 1 3.6699 -2.6371 -1.2488 33 1 1.7002 -4.6061 -2.4978 34 1 1.5641 -2.9712 -5.0066 35 1 1.7713 -4.7334 -4.8626 36 1 2.6252 -3.8826 -7.0429 37 1 3.9286 -4.5911 -6.0588 38 1 5.5056 -0.4668 -6.8579 39 1 6.9175 -0.3402 -8.8697 40 1 6.9567 -2.2109 -10.4683 41 1 5.5910 -4.2164 -10.0569 42 1 4.1761 -4.3538 -8.0479 43 1 5.4728 -3.1059 -4.8742 44 1 5.2653 -1.3436 -5.0183 45 1 3.1084 -1.4861 -3.8224 46 1 4.4116 -2.1945 -2.8379 47 1 1.7959 -1.5553 -2.4980 48 1 0.6245 -2.5568 -3.3881 49 1 -0.1736 -3.5242 -1.2487 50 1 -0.3365 -1.7520 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:11 Heat of formation + Delta-G solvation = 19.546325 kcal Electronic energy + Delta-G solvation = -27224.483836 eV Core-core repulsion = 23829.274944 eV Total energy + Delta-G solvation = -3395.208893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.50553 -40.18669 -38.34569 -36.10425 -34.06594 -32.62088 -31.55988 -31.36999 -31.12192 -29.46300 -27.13939 -26.15587 -25.21409 -23.38410 -23.08217 -22.53380 -21.92681 -20.78563 -19.91925 -18.65655 -17.72031 -16.94804 -16.71642 -16.58297 -16.40708 -15.90102 -15.62458 -15.52414 -15.15884 -14.99594 -14.85956 -14.57557 -14.50358 -14.32770 -13.72327 -13.43180 -13.26745 -13.10317 -12.89132 -12.83623 -12.59309 -12.50438 -12.45489 -12.37386 -12.21146 -12.05014 -11.84700 -11.75593 -11.48716 -11.43795 -10.91101 -10.71740 -10.65990 -10.49022 -10.31837 -9.83196 -9.14470 -8.76469 -8.03349 -6.12894 0.48499 0.51241 1.37587 1.40278 1.47890 2.44100 2.65428 2.94665 3.00388 3.25170 3.78176 3.89756 3.97231 4.11054 4.11374 4.20701 4.26046 4.29716 4.32947 4.36124 4.48436 4.51388 4.59911 4.62595 4.71464 4.74364 4.77697 4.79154 4.83160 4.89047 4.93167 4.95176 5.00657 5.08232 5.13990 5.15484 5.27615 5.34758 5.44211 5.53705 5.53968 5.64763 5.66474 5.68023 5.73029 5.87677 5.92944 6.03235 6.17324 6.21619 6.23445 6.39594 6.46870 6.97507 7.52867 9.01208 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.003552 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.680940 B = 7880.364446 C = 8857.452809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.101 3.899 13 N -0.527 5.527 14 C 0.051 3.949 15 C 0.063 3.937 16 N -0.505 5.505 17 C 0.099 3.901 18 C -0.160 4.160 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.098 4.098 22 C -0.182 4.182 23 C 0.074 3.926 24 C 0.053 3.947 25 C -0.115 4.115 26 C -0.099 4.099 27 H 0.255 0.745 28 H -0.012 1.012 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.026 0.974 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 -8.445 -17.843 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.007 4.007 13 N -0.250 5.250 14 C -0.077 4.077 15 C -0.063 4.063 16 N -0.221 5.221 17 C 0.002 3.998 18 C -0.181 4.181 19 C -0.119 4.119 20 C -0.174 4.174 21 C -0.117 4.117 22 C -0.203 4.203 23 C -0.052 4.052 24 C -0.075 4.075 25 C -0.154 4.154 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.138 -8.340 -17.749 22.553 hybrid contribution -0.378 1.571 0.482 1.686 sum 10.760 -6.769 -17.268 21.442 Atomic orbital electron populations 1.70013 1.07070 1.26475 1.52486 1.25593 0.95383 1.01712 0.95685 0.85896 0.79157 0.80771 0.77956 1.20662 1.21502 1.19072 1.21392 0.92675 0.91399 1.48400 0.92836 1.18693 0.93209 0.93247 0.92903 1.21449 0.97703 0.97549 0.97165 1.21362 0.97250 1.01165 0.92905 1.21577 0.92345 0.97342 0.89483 1.62544 1.27794 1.32481 1.02153 1.22242 0.94848 1.01618 0.89003 1.22321 0.96688 0.88945 0.98383 1.59211 1.26575 1.34405 1.01869 1.19180 0.93087 0.94775 0.92793 1.20974 0.99693 0.97414 0.99994 1.21286 0.97823 0.99454 0.93368 1.21397 1.01216 0.94139 1.00632 1.21329 0.95083 0.98652 0.96593 1.21522 1.03237 0.98205 0.97347 1.22208 0.94126 1.01971 0.86890 1.22175 0.96618 0.90807 0.97919 1.21796 0.97774 0.99323 0.96507 1.21302 0.98350 0.98396 0.95769 0.93549 0.99434 0.93003 0.93421 0.91469 0.92812 0.90136 0.95390 0.88592 0.88634 0.92244 0.86272 0.84199 0.83975 0.83858 0.84652 0.92937 0.89541 0.95708 0.89895 0.93605 0.94564 0.95495 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 2 C 0.01 0.77 5.30 84.66 0.45 1.21 16 3 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.50 -26.57 6.61 25.60 0.17 -26.40 16 8 H 0.05 2.80 6.71 -2.91 -0.02 2.78 16 9 C 0.04 1.86 2.59 -11.54 -0.03 1.83 16 10 C -0.10 -3.99 5.41 30.59 0.17 -3.82 16 11 C -0.09 -3.17 4.78 30.59 0.15 -3.02 16 12 C 0.10 3.42 2.23 44.92 0.10 3.52 16 13 N -0.53 -15.74 4.70 -870.50 -4.09 -19.83 16 14 C 0.05 1.35 5.25 86.31 0.45 1.80 16 15 C 0.06 1.44 4.30 86.31 0.37 1.81 16 16 N -0.51 -13.04 4.75 -694.75 -3.30 -16.34 16 17 C 0.10 2.35 5.64 38.21 0.22 2.56 16 18 C -0.16 -3.59 9.19 22.40 0.21 -3.38 16 19 C -0.10 -1.83 10.04 22.25 0.22 -1.61 16 20 C -0.16 -2.50 10.04 22.29 0.22 -2.27 16 21 C -0.10 -1.63 10.04 22.25 0.22 -1.41 16 22 C -0.18 -3.65 8.82 22.40 0.20 -3.45 16 23 C 0.07 1.93 5.38 86.31 0.46 2.40 16 24 C 0.05 1.66 4.81 86.31 0.42 2.08 16 25 C -0.12 -4.74 4.28 30.58 0.13 -4.61 16 26 C -0.10 -4.67 5.23 30.58 0.16 -4.51 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 28 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 2.10 4.83 -2.39 -0.01 2.09 16 33 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 34 H 0.03 0.86 6.59 -2.39 -0.02 0.84 16 35 H 0.10 2.20 8.12 -2.39 -0.02 2.18 16 36 H 0.10 1.89 7.17 -2.39 -0.02 1.87 16 37 H 0.06 1.28 7.58 -2.38 -0.02 1.26 16 38 H 0.12 2.66 7.19 -2.91 -0.02 2.64 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 2.34 5.81 -2.91 -0.02 2.32 16 43 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 2.15 6.82 -2.39 -0.02 2.13 16 45 H 0.02 0.91 6.46 -2.39 -0.02 0.90 16 46 H 0.08 2.68 6.17 -2.39 -0.01 2.66 16 47 H 0.05 2.15 5.53 -2.39 -0.01 2.14 16 48 H 0.04 1.43 6.59 -2.38 -0.02 1.41 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.05 2.86 6.07 -2.39 -0.01 2.85 16 Total: -1.00 -60.63 362.67 0.07 -60.55 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.91 Total: 20.29 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.28 Total: -37.26 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -7.15 Total: -89.45 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.63 0.07 -60.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.098 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds