Wall clock time and date at job start Tue Mar 31 2020 11:39:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.31881 * 119.62195 * 2 1
4 4 C 1.31856 * 121.72516 * 179.97438 * 3 2 1
5 5 C 1.38217 * 120.76900 * 359.97438 * 4 3 2
6 6 C 1.38631 * 119.15874 * 0.30129 * 5 4 3
7 7 C 1.38188 * 119.61613 * 180.02562 * 2 1 3
8 8 C 1.50700 * 120.41536 * 0.02685 * 7 2 1
9 9 H 1.09004 * 109.47116 * 163.08835 * 8 7 2
10 10 N 1.46895 * 109.47513 * 43.08701 * 8 7 2
11 11 C 1.46900 * 111.00243 * 117.21357 * 10 8 7
12 12 C 1.53004 * 109.47100 * 275.00041 * 11 10 8
13 13 C 1.52991 * 109.47170 * 300.00019 * 12 11 10
14 14 C 1.53004 * 109.47215 * 299.99819 * 13 12 11
15 15 C 1.50703 * 109.47215 * 180.02562 * 14 13 12
16 16 H 1.07995 * 119.99906 * 240.00027 * 15 14 13
17 17 C 1.37882 * 120.00032 * 59.99771 * 15 14 13
18 18 N 1.31509 * 119.99625 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 119.99815 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.46965 * 90.00512 * 19 17 15
21 21 H 1.48507 * 109.46836 * 210.00160 * 19 17 15
22 22 H 1.48492 * 109.47239 * 330.00247 * 19 17 15
23 23 C 1.53004 * 109.46904 * 60.00018 * 14 13 12
24 24 C 1.52991 * 109.47170 * 300.00009 * 23 14 13
25 25 C 1.53005 * 109.46998 * 283.08367 * 8 7 2
26 26 C 1.52997 * 117.49831 * 2.58950 * 25 8 7
27 27 C 1.52995 * 117.49950 * 293.96494 * 25 8 7
28 28 H 1.09004 * 109.47085 * 94.13827 * 1 2 3
29 29 H 1.09000 * 109.47325 * 214.14156 * 1 2 3
30 30 H 1.09002 * 109.47031 * 334.14360 * 1 2 3
31 31 H 1.08007 * 119.61152 * 180.02562 * 4 3 2
32 32 H 1.07997 * 120.42341 * 180.02562 * 5 4 3
33 33 H 1.08002 * 120.79337 * 179.71801 * 6 5 4
34 34 H 1.00901 * 111.00050 * 241.16705 * 10 8 7
35 35 H 1.09004 * 109.46864 * 35.00015 * 11 10 8
36 36 H 1.09003 * 109.46687 * 60.00079 * 12 11 10
37 37 H 1.08998 * 109.47125 * 179.97438 * 12 11 10
38 38 H 1.08996 * 109.47159 * 179.97438 * 13 12 11
39 39 H 1.09004 * 109.47517 * 59.99762 * 13 12 11
40 40 H 1.08998 * 109.47179 * 300.00113 * 14 13 12
41 41 H 0.97001 * 120.00002 * 180.02562 * 18 17 15
42 42 H 1.09003 * 109.46687 * 179.97438 * 23 14 13
43 43 H 1.08998 * 109.47125 * 60.00062 * 23 14 13
44 44 H 1.09004 * 109.47517 * 300.00238 * 24 23 14
45 45 H 1.08996 * 109.47159 * 180.02562 * 24 23 14
46 46 H 1.09000 * 115.54747 * 148.29001 * 25 8 7
47 47 H 1.08998 * 117.50172 * 359.97438 * 26 25 8
48 48 H 1.09002 * 117.49977 * 145.01843 * 26 25 8
49 49 H 1.09005 * 117.49734 * 214.97525 * 27 25 8
50 50 H 1.09000 * 117.50314 * 359.97384 * 27 25 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1588 1.1464 0.0000
4 6 3.4765 1.1948 0.0005
5 6 4.2267 0.0340 0.0016
6 6 3.5765 -1.1904 -0.0042
7 6 2.1899 -1.2013 -0.0005
8 6 1.4371 -2.5069 -0.0017
9 1 2.1075 -3.3126 -0.3010
10 7 0.3166 -2.4253 -0.9482
11 6 0.4740 -3.4002 -2.0357
12 6 1.3581 -2.8027 -3.1323
13 6 0.7049 -1.5313 -3.6777
14 6 -0.6685 -1.8726 -4.2594
15 6 -1.3117 -0.6203 -4.7972
16 1 -2.2566 -0.2839 -4.3968
17 6 -0.6937 0.0959 -5.8003
18 7 0.4567 -0.3142 -6.2881
19 14 -1.4913 1.6477 -6.4674
20 1 -1.0254 2.8198 -5.6838
21 1 -1.1149 1.8241 -7.8931
22 1 -2.9676 1.5327 -6.3558
23 6 -1.5526 -2.4701 -3.1628
24 6 -0.8994 -3.7415 -2.6174
25 6 0.8989 -2.7865 1.4030
26 6 1.1483 -1.7276 2.4788
27 6 1.9202 -3.0483 2.5117
28 1 -0.3633 -0.0742 -1.0250
29 1 -0.3634 -0.8505 0.5768
30 1 -0.3633 0.9248 0.4482
31 1 3.9753 2.1528 0.0009
32 1 5.3057 0.0801 0.0024
33 1 4.1366 -2.1138 -0.0081
34 1 -0.5659 -2.5503 -0.4754
35 1 0.9394 -4.3060 -1.6471
36 1 2.3365 -2.5595 -2.7179
37 1 1.4752 -3.5262 -3.9390
38 1 1.3349 -1.1054 -4.4586
39 1 0.5880 -0.8078 -2.8708
40 1 -0.5517 -2.5960 -5.0663
41 1 0.8916 0.1899 -6.9936
42 1 -2.5311 -2.7129 -3.5771
43 1 -1.6693 -1.7467 -2.3558
44 1 -0.7825 -4.4650 -3.4243
45 1 -1.5294 -4.1674 -1.8365
46 1 -0.0418 -3.3355 1.4453
47 1 1.6962 -0.8320 2.1860
48 1 0.3717 -1.5798 3.2292
49 1 1.6512 -3.7693 3.2837
50 1 2.9755 -3.0218 2.2404
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173332481.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:09
Heat of formation + Delta-G solvation = 53.160329 kcal
Electronic energy + Delta-G solvation = -28151.462340 eV
Core-core repulsion = 24757.711059 eV
Total energy + Delta-G solvation = -3393.751280 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.65967 -38.46470 -37.30375 -34.19760 -32.70640 -32.55733 -31.22123 -29.65468
-28.67876 -27.59824 -25.36053 -24.12997 -23.03444 -22.32416 -21.79516 -21.49764
-20.50797 -19.95504 -18.17177 -16.40722 -16.26891 -16.19876 -16.08205 -15.32679
-14.91653 -14.54501 -14.15959 -14.02808 -13.78982 -13.38840 -13.03692 -12.80103
-12.62913 -12.53494 -12.03913 -11.98723 -11.86928 -11.70171 -11.59815 -11.35204
-11.21351 -11.15644 -11.05029 -10.76868 -10.56273 -10.42746 -10.22061 -10.10688
-9.97605 -9.66644 -9.47793 -9.16473 -9.14196 -8.78050 -8.46863 -8.39892
-8.12493 -7.93553 -5.83770 -3.88754 1.40323 1.55077 3.39525 3.45949
3.48527 3.60308 4.03548 4.35487 4.55751 4.58025 4.69643 4.79814
4.94309 5.00833 5.03345 5.12875 5.28575 5.42220 5.45821 5.50224
5.52357 5.53183 5.64314 5.74466 5.76532 5.82263 5.91447 5.98705
6.03210 6.10602 6.19976 6.24701 6.36635 6.39475 6.44845 6.51905
6.55947 6.62950 6.71555 6.83523 6.92245 7.05474 7.08949 7.33780
7.44550 7.59679 7.70333 7.78838 7.92796 8.26191 8.34736 8.36768
8.65467 9.15472 9.74979 11.21403
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.013864 B = 0.004990 C = 0.004269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.186030 B = 5610.317405 C = 6557.206832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.173 3.827
3 N -0.490 5.490
4 C 0.095 3.905
5 C -0.188 4.188
6 C -0.077 4.077
7 C -0.110 4.110
8 C 0.162 3.838
9 H 0.071 0.929
10 N -0.658 5.658
11 C 0.094 3.906
12 C -0.104 4.104
13 C -0.094 4.094
14 C 0.053 3.947
15 C -0.506 4.506
16 H 0.051 0.949
17 C 0.062 3.938
18 N -0.891 5.891
19 Si 0.884 3.116
20 H -0.282 1.282
21 H -0.289 1.289
22 H -0.276 1.276
23 C -0.101 4.101
24 C -0.118 4.118
25 C -0.165 4.165
26 C -0.173 4.173
27 C -0.176 4.176
28 H 0.102 0.898
29 H 0.072 0.928
30 H 0.055 0.945
31 H 0.148 0.852
32 H 0.127 0.873
33 H 0.124 0.876
34 H 0.341 0.659
35 H 0.026 0.974
36 H 0.035 0.965
37 H 0.047 0.953
38 H 0.078 0.922
39 H 0.048 0.952
40 H 0.016 0.984
41 H 0.256 0.744
42 H 0.038 0.962
43 H 0.056 0.944
44 H 0.059 0.941
45 H 0.041 0.959
46 H 0.108 0.892
47 H 0.098 0.902
48 H 0.091 0.909
49 H 0.092 0.908
50 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.043 -5.922 17.045 18.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.035 3.965
3 N -0.200 5.200
4 C -0.062 4.062
5 C -0.208 4.208
6 C -0.103 4.103
7 C -0.113 4.113
8 C 0.051 3.949
9 H 0.089 0.911
10 N -0.290 5.290
11 C -0.015 4.015
12 C -0.142 4.142
13 C -0.132 4.132
14 C 0.034 3.966
15 C -0.544 4.544
16 H 0.069 0.931
17 C -0.139 4.139
18 N -0.530 5.530
19 Si 0.712 3.288
20 H -0.208 1.208
21 H -0.215 1.215
22 H -0.201 1.201
23 C -0.139 4.139
24 C -0.156 4.156
25 C -0.184 4.184
26 C -0.210 4.210
27 C -0.214 4.214
28 H 0.120 0.880
29 H 0.091 0.909
30 H 0.074 0.926
31 H 0.165 0.835
32 H 0.144 0.856
33 H 0.142 0.858
34 H 0.161 0.839
35 H 0.044 0.956
36 H 0.054 0.946
37 H 0.066 0.934
38 H 0.097 0.903
39 H 0.067 0.933
40 H 0.034 0.966
41 H 0.066 0.934
42 H 0.057 0.943
43 H 0.075 0.925
44 H 0.078 0.922
45 H 0.060 0.940
46 H 0.126 0.874
47 H 0.116 0.884
48 H 0.110 0.890
49 H 0.110 0.890
50 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 4.946 -4.588 16.523 17.847
hybrid contribution 0.210 -0.739 -0.084 0.773
sum 5.156 -5.327 16.439 18.034
Atomic orbital electron populations
1.20835 0.88460 1.01105 1.04769 1.21080 0.97280 0.86987 0.91161
1.67577 1.09732 1.29669 1.12998 1.22618 0.89798 0.98065 0.95696
1.21933 1.00873 0.93561 1.04436 1.21357 0.93901 0.98072 0.97015
1.20545 0.93363 0.96291 1.01062 1.19927 0.92913 0.93078 0.88972
0.91087 1.60737 1.03341 1.53623 1.11342 1.21663 0.96761 0.91054
0.92034 1.21596 0.96747 1.00145 0.95733 1.21401 0.98710 0.93836
0.99265 1.18596 0.91541 0.94908 0.91525 1.21217 1.05859 1.08984
1.18357 0.93060 1.24928 0.94944 0.97365 0.96647 1.69894 1.16139
1.39292 1.27709 0.86730 0.79699 0.84300 0.78067 1.20778 1.21494
1.20079 1.21537 0.98056 0.94608 0.99706 1.21743 0.94986 0.99559
0.99289 1.22897 1.00428 1.04092 0.90982 1.23104 1.03188 0.93605
1.01098 1.22919 0.97565 0.99900 1.01012 0.88017 0.90936 0.92641
0.83495 0.85551 0.85815 0.83855 0.95575 0.94636 0.93445 0.90350
0.93337 0.96628 0.93371 0.94329 0.92492 0.92224 0.93982 0.87394
0.88361 0.89009 0.88992 0.88972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.42 8.24 36.00 0.30 -1.12 16
2 C 0.17 2.73 5.21 -82.59 -0.43 2.30 16
3 N -0.49 -8.21 10.27 -9.47 -0.10 -8.30 16
4 C 0.10 1.35 11.18 -17.55 -0.20 1.15 16
5 C -0.19 -2.37 10.11 -39.44 -0.40 -2.77 16
6 C -0.08 -1.00 9.81 -39.28 -0.39 -1.39 16
7 C -0.11 -1.53 3.40 -104.48 -0.36 -1.89 16
8 C 0.16 2.01 2.34 -68.86 -0.16 1.85 16
9 H 0.07 0.90 7.07 -51.93 -0.37 0.53 16
10 N -0.66 -9.18 2.27 -100.95 -0.23 -9.41 16
11 C 0.09 1.46 2.69 -67.71 -0.18 1.28 16
12 C -0.10 -2.00 5.53 -26.73 -0.15 -2.14 16
13 C -0.09 -2.22 4.82 -26.73 -0.13 -2.34 16
14 C 0.05 1.29 2.10 -91.77 -0.19 1.10 16
15 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16
16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16
17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
18 N -0.89 -26.08 11.32 55.43 0.63 -25.46 16
19 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16
20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
23 C -0.10 -2.02 4.98 -26.73 -0.13 -2.15 16
24 C -0.12 -1.91 5.30 -26.73 -0.14 -2.05 16
25 C -0.16 -1.67 4.61 -90.62 -0.42 -2.09 16
26 C -0.17 -1.77 8.49 -26.73 -0.23 -1.99 16
27 C -0.18 -1.62 10.13 -26.73 -0.27 -1.89 16
28 H 0.10 1.81 6.99 -51.93 -0.36 1.44 16
29 H 0.07 0.92 4.45 -51.93 -0.23 0.69 16
30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16
32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16
33 H 0.12 1.34 8.05 -52.49 -0.42 0.92 16
34 H 0.34 4.32 6.49 -39.29 -0.25 4.06 16
35 H 0.03 0.38 7.47 -51.93 -0.39 -0.01 16
36 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16
37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16
39 H 0.05 1.18 6.86 -51.93 -0.36 0.82 16
40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
43 H 0.06 1.12 7.48 -51.93 -0.39 0.73 16
44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16
46 H 0.11 1.00 7.80 -51.93 -0.40 0.60 16
47 H 0.10 1.20 5.52 -51.93 -0.29 0.91 16
48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
50 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 375.28 15.07 5.66 5.66
Total: -1.00 -29.85 375.28 -11.31 -41.16
By element:
Atomic # 1 Polarization: 14.62 SS G_CDS: -8.39 Total: 6.23 kcal
Atomic # 6 Polarization: -22.94 SS G_CDS: -3.86 Total: -26.80 kcal
Atomic # 7 Polarization: -43.47 SS G_CDS: 0.30 Total: -43.17 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -29.85 -11.31 -41.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173332481.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.322 kcal
(2) G-P(sol) polarization free energy of solvation -29.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds