Wall clock time and date at job start Tue Mar 31 2020 11:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31881 * 119.62195 * 2 1 4 4 C 1.31856 * 121.72516 * 179.97438 * 3 2 1 5 5 C 1.38217 * 120.76900 * 359.97438 * 4 3 2 6 6 C 1.38631 * 119.15874 * 0.30129 * 5 4 3 7 7 C 1.38188 * 119.61613 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.41536 * 0.02685 * 7 2 1 9 9 H 1.09004 * 109.47116 * 163.08835 * 8 7 2 10 10 N 1.46895 * 109.47513 * 43.08701 * 8 7 2 11 11 C 1.46900 * 111.00243 * 117.21357 * 10 8 7 12 12 C 1.53004 * 109.47100 * 275.00041 * 11 10 8 13 13 C 1.52991 * 109.47170 * 300.00019 * 12 11 10 14 14 C 1.53004 * 109.47215 * 299.99819 * 13 12 11 15 15 C 1.50703 * 109.47215 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99906 * 240.00027 * 15 14 13 17 17 C 1.37882 * 120.00032 * 59.99771 * 15 14 13 18 18 N 1.31509 * 119.99625 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46965 * 90.00512 * 19 17 15 21 21 H 1.48507 * 109.46836 * 210.00160 * 19 17 15 22 22 H 1.48492 * 109.47239 * 330.00247 * 19 17 15 23 23 C 1.53004 * 109.46904 * 60.00018 * 14 13 12 24 24 C 1.52991 * 109.47170 * 300.00009 * 23 14 13 25 25 C 1.53005 * 109.46998 * 283.08367 * 8 7 2 26 26 C 1.52997 * 117.49831 * 2.58950 * 25 8 7 27 27 C 1.52995 * 117.49950 * 293.96494 * 25 8 7 28 28 H 1.09004 * 109.47085 * 94.13827 * 1 2 3 29 29 H 1.09000 * 109.47325 * 214.14156 * 1 2 3 30 30 H 1.09002 * 109.47031 * 334.14360 * 1 2 3 31 31 H 1.08007 * 119.61152 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.42341 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.79337 * 179.71801 * 6 5 4 34 34 H 1.00901 * 111.00050 * 241.16705 * 10 8 7 35 35 H 1.09004 * 109.46864 * 35.00015 * 11 10 8 36 36 H 1.09003 * 109.46687 * 60.00079 * 12 11 10 37 37 H 1.08998 * 109.47125 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47159 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.47517 * 59.99762 * 13 12 11 40 40 H 1.08998 * 109.47179 * 300.00113 * 14 13 12 41 41 H 0.97001 * 120.00002 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46687 * 179.97438 * 23 14 13 43 43 H 1.08998 * 109.47125 * 60.00062 * 23 14 13 44 44 H 1.09004 * 109.47517 * 300.00238 * 24 23 14 45 45 H 1.08996 * 109.47159 * 180.02562 * 24 23 14 46 46 H 1.09000 * 115.54747 * 148.29001 * 25 8 7 47 47 H 1.08998 * 117.50172 * 359.97438 * 26 25 8 48 48 H 1.09002 * 117.49977 * 145.01843 * 26 25 8 49 49 H 1.09005 * 117.49734 * 214.97525 * 27 25 8 50 50 H 1.09000 * 117.50314 * 359.97384 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1464 0.0000 4 6 3.4765 1.1948 0.0005 5 6 4.2267 0.0340 0.0016 6 6 3.5765 -1.1904 -0.0042 7 6 2.1899 -1.2013 -0.0005 8 6 1.4371 -2.5069 -0.0017 9 1 2.1075 -3.3126 -0.3010 10 7 0.3166 -2.4253 -0.9482 11 6 0.4740 -3.4002 -2.0357 12 6 1.3581 -2.8027 -3.1323 13 6 0.7049 -1.5313 -3.6777 14 6 -0.6685 -1.8726 -4.2594 15 6 -1.3117 -0.6203 -4.7972 16 1 -2.2566 -0.2839 -4.3968 17 6 -0.6937 0.0959 -5.8003 18 7 0.4567 -0.3142 -6.2881 19 14 -1.4913 1.6477 -6.4674 20 1 -1.0254 2.8198 -5.6838 21 1 -1.1149 1.8241 -7.8931 22 1 -2.9676 1.5327 -6.3558 23 6 -1.5526 -2.4701 -3.1628 24 6 -0.8994 -3.7415 -2.6174 25 6 0.8989 -2.7865 1.4030 26 6 1.1483 -1.7276 2.4788 27 6 1.9202 -3.0483 2.5117 28 1 -0.3633 -0.0742 -1.0250 29 1 -0.3634 -0.8505 0.5768 30 1 -0.3633 0.9248 0.4482 31 1 3.9753 2.1528 0.0009 32 1 5.3057 0.0801 0.0024 33 1 4.1366 -2.1138 -0.0081 34 1 -0.5659 -2.5503 -0.4754 35 1 0.9394 -4.3060 -1.6471 36 1 2.3365 -2.5595 -2.7179 37 1 1.4752 -3.5262 -3.9390 38 1 1.3349 -1.1054 -4.4586 39 1 0.5880 -0.8078 -2.8708 40 1 -0.5517 -2.5960 -5.0663 41 1 0.8916 0.1899 -6.9936 42 1 -2.5311 -2.7129 -3.5771 43 1 -1.6693 -1.7467 -2.3558 44 1 -0.7825 -4.4650 -3.4243 45 1 -1.5294 -4.1674 -1.8365 46 1 -0.0418 -3.3355 1.4453 47 1 1.6962 -0.8320 2.1860 48 1 0.3717 -1.5798 3.2292 49 1 1.6512 -3.7693 3.2837 50 1 2.9755 -3.0218 2.2404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:09 Heat of formation + Delta-G solvation = 53.160329 kcal Electronic energy + Delta-G solvation = -28151.462340 eV Core-core repulsion = 24757.711059 eV Total energy + Delta-G solvation = -3393.751280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65967 -38.46470 -37.30375 -34.19760 -32.70640 -32.55733 -31.22123 -29.65468 -28.67876 -27.59824 -25.36053 -24.12997 -23.03444 -22.32416 -21.79516 -21.49764 -20.50797 -19.95504 -18.17177 -16.40722 -16.26891 -16.19876 -16.08205 -15.32679 -14.91653 -14.54501 -14.15959 -14.02808 -13.78982 -13.38840 -13.03692 -12.80103 -12.62913 -12.53494 -12.03913 -11.98723 -11.86928 -11.70171 -11.59815 -11.35204 -11.21351 -11.15644 -11.05029 -10.76868 -10.56273 -10.42746 -10.22061 -10.10688 -9.97605 -9.66644 -9.47793 -9.16473 -9.14196 -8.78050 -8.46863 -8.39892 -8.12493 -7.93553 -5.83770 -3.88754 1.40323 1.55077 3.39525 3.45949 3.48527 3.60308 4.03548 4.35487 4.55751 4.58025 4.69643 4.79814 4.94309 5.00833 5.03345 5.12875 5.28575 5.42220 5.45821 5.50224 5.52357 5.53183 5.64314 5.74466 5.76532 5.82263 5.91447 5.98705 6.03210 6.10602 6.19976 6.24701 6.36635 6.39475 6.44845 6.51905 6.55947 6.62950 6.71555 6.83523 6.92245 7.05474 7.08949 7.33780 7.44550 7.59679 7.70333 7.78838 7.92796 8.26191 8.34736 8.36768 8.65467 9.15472 9.74979 11.21403 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.004990 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.186030 B = 5610.317405 C = 6557.206832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.173 3.827 3 N -0.490 5.490 4 C 0.095 3.905 5 C -0.188 4.188 6 C -0.077 4.077 7 C -0.110 4.110 8 C 0.162 3.838 9 H 0.071 0.929 10 N -0.658 5.658 11 C 0.094 3.906 12 C -0.104 4.104 13 C -0.094 4.094 14 C 0.053 3.947 15 C -0.506 4.506 16 H 0.051 0.949 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.165 4.165 26 C -0.173 4.173 27 C -0.176 4.176 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.341 0.659 35 H 0.026 0.974 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.016 0.984 41 H 0.256 0.744 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.041 0.959 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -5.922 17.045 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.035 3.965 3 N -0.200 5.200 4 C -0.062 4.062 5 C -0.208 4.208 6 C -0.103 4.103 7 C -0.113 4.113 8 C 0.051 3.949 9 H 0.089 0.911 10 N -0.290 5.290 11 C -0.015 4.015 12 C -0.142 4.142 13 C -0.132 4.132 14 C 0.034 3.966 15 C -0.544 4.544 16 H 0.069 0.931 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.139 4.139 24 C -0.156 4.156 25 C -0.184 4.184 26 C -0.210 4.210 27 C -0.214 4.214 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.946 -4.588 16.523 17.847 hybrid contribution 0.210 -0.739 -0.084 0.773 sum 5.156 -5.327 16.439 18.034 Atomic orbital electron populations 1.20835 0.88460 1.01105 1.04769 1.21080 0.97280 0.86987 0.91161 1.67577 1.09732 1.29669 1.12998 1.22618 0.89798 0.98065 0.95696 1.21933 1.00873 0.93561 1.04436 1.21357 0.93901 0.98072 0.97015 1.20545 0.93363 0.96291 1.01062 1.19927 0.92913 0.93078 0.88972 0.91087 1.60737 1.03341 1.53623 1.11342 1.21663 0.96761 0.91054 0.92034 1.21596 0.96747 1.00145 0.95733 1.21401 0.98710 0.93836 0.99265 1.18596 0.91541 0.94908 0.91525 1.21217 1.05859 1.08984 1.18357 0.93060 1.24928 0.94944 0.97365 0.96647 1.69894 1.16139 1.39292 1.27709 0.86730 0.79699 0.84300 0.78067 1.20778 1.21494 1.20079 1.21537 0.98056 0.94608 0.99706 1.21743 0.94986 0.99559 0.99289 1.22897 1.00428 1.04092 0.90982 1.23104 1.03188 0.93605 1.01098 1.22919 0.97565 0.99900 1.01012 0.88017 0.90936 0.92641 0.83495 0.85551 0.85815 0.83855 0.95575 0.94636 0.93445 0.90350 0.93337 0.96628 0.93371 0.94329 0.92492 0.92224 0.93982 0.87394 0.88361 0.89009 0.88992 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 8.24 36.00 0.30 -1.12 16 2 C 0.17 2.73 5.21 -82.59 -0.43 2.30 16 3 N -0.49 -8.21 10.27 -9.47 -0.10 -8.30 16 4 C 0.10 1.35 11.18 -17.55 -0.20 1.15 16 5 C -0.19 -2.37 10.11 -39.44 -0.40 -2.77 16 6 C -0.08 -1.00 9.81 -39.28 -0.39 -1.39 16 7 C -0.11 -1.53 3.40 -104.48 -0.36 -1.89 16 8 C 0.16 2.01 2.34 -68.86 -0.16 1.85 16 9 H 0.07 0.90 7.07 -51.93 -0.37 0.53 16 10 N -0.66 -9.18 2.27 -100.95 -0.23 -9.41 16 11 C 0.09 1.46 2.69 -67.71 -0.18 1.28 16 12 C -0.10 -2.00 5.53 -26.73 -0.15 -2.14 16 13 C -0.09 -2.22 4.82 -26.73 -0.13 -2.34 16 14 C 0.05 1.29 2.10 -91.77 -0.19 1.10 16 15 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -26.08 11.32 55.43 0.63 -25.46 16 19 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.10 -2.02 4.98 -26.73 -0.13 -2.15 16 24 C -0.12 -1.91 5.30 -26.73 -0.14 -2.05 16 25 C -0.16 -1.67 4.61 -90.62 -0.42 -2.09 16 26 C -0.17 -1.77 8.49 -26.73 -0.23 -1.99 16 27 C -0.18 -1.62 10.13 -26.73 -0.27 -1.89 16 28 H 0.10 1.81 6.99 -51.93 -0.36 1.44 16 29 H 0.07 0.92 4.45 -51.93 -0.23 0.69 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.34 8.05 -52.49 -0.42 0.92 16 34 H 0.34 4.32 6.49 -39.29 -0.25 4.06 16 35 H 0.03 0.38 7.47 -51.93 -0.39 -0.01 16 36 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 39 H 0.05 1.18 6.86 -51.93 -0.36 0.82 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.12 7.48 -51.93 -0.39 0.73 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 46 H 0.11 1.00 7.80 -51.93 -0.40 0.60 16 47 H 0.10 1.20 5.52 -51.93 -0.29 0.91 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -29.85 375.28 -11.31 -41.16 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.39 Total: 6.23 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.86 Total: -26.80 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.30 Total: -43.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.85 -11.31 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.322 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds