Wall clock time and date at job start Tue Mar 31 2020 11:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31881 * 119.62195 * 2 1 4 4 C 1.31856 * 121.72516 * 179.97438 * 3 2 1 5 5 C 1.38217 * 120.76900 * 359.97438 * 4 3 2 6 6 C 1.38631 * 119.15874 * 0.30129 * 5 4 3 7 7 C 1.38188 * 119.61613 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.41536 * 0.02685 * 7 2 1 9 9 H 1.09004 * 109.47116 * 163.08835 * 8 7 2 10 10 N 1.46895 * 109.47513 * 43.08701 * 8 7 2 11 11 C 1.46900 * 111.00243 * 117.21357 * 10 8 7 12 12 C 1.53004 * 109.47100 * 275.00041 * 11 10 8 13 13 C 1.52991 * 109.47170 * 300.00019 * 12 11 10 14 14 C 1.53004 * 109.47215 * 299.99819 * 13 12 11 15 15 C 1.50703 * 109.47215 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99906 * 240.00027 * 15 14 13 17 17 C 1.37882 * 120.00032 * 59.99771 * 15 14 13 18 18 N 1.31509 * 119.99625 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46965 * 90.00512 * 19 17 15 21 21 H 1.48507 * 109.46836 * 210.00160 * 19 17 15 22 22 H 1.48492 * 109.47239 * 330.00247 * 19 17 15 23 23 C 1.53004 * 109.46904 * 60.00018 * 14 13 12 24 24 C 1.52991 * 109.47170 * 300.00009 * 23 14 13 25 25 C 1.53005 * 109.46998 * 283.08367 * 8 7 2 26 26 C 1.52997 * 117.49831 * 2.58950 * 25 8 7 27 27 C 1.52995 * 117.49950 * 293.96494 * 25 8 7 28 28 H 1.09004 * 109.47085 * 94.13827 * 1 2 3 29 29 H 1.09000 * 109.47325 * 214.14156 * 1 2 3 30 30 H 1.09002 * 109.47031 * 334.14360 * 1 2 3 31 31 H 1.08007 * 119.61152 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.42341 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.79337 * 179.71801 * 6 5 4 34 34 H 1.00901 * 111.00050 * 241.16705 * 10 8 7 35 35 H 1.09004 * 109.46864 * 35.00015 * 11 10 8 36 36 H 1.09003 * 109.46687 * 60.00079 * 12 11 10 37 37 H 1.08998 * 109.47125 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47159 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.47517 * 59.99762 * 13 12 11 40 40 H 1.08998 * 109.47179 * 300.00113 * 14 13 12 41 41 H 0.97001 * 120.00002 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46687 * 179.97438 * 23 14 13 43 43 H 1.08998 * 109.47125 * 60.00062 * 23 14 13 44 44 H 1.09004 * 109.47517 * 300.00238 * 24 23 14 45 45 H 1.08996 * 109.47159 * 180.02562 * 24 23 14 46 46 H 1.09000 * 115.54747 * 148.29001 * 25 8 7 47 47 H 1.08998 * 117.50172 * 359.97438 * 26 25 8 48 48 H 1.09002 * 117.49977 * 145.01843 * 26 25 8 49 49 H 1.09005 * 117.49734 * 214.97525 * 27 25 8 50 50 H 1.09000 * 117.50314 * 359.97384 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1464 0.0000 4 6 3.4765 1.1948 0.0005 5 6 4.2267 0.0340 0.0016 6 6 3.5765 -1.1904 -0.0042 7 6 2.1899 -1.2013 -0.0005 8 6 1.4371 -2.5069 -0.0017 9 1 2.1075 -3.3126 -0.3010 10 7 0.3166 -2.4253 -0.9482 11 6 0.4740 -3.4002 -2.0357 12 6 1.3581 -2.8027 -3.1323 13 6 0.7049 -1.5313 -3.6777 14 6 -0.6685 -1.8726 -4.2594 15 6 -1.3117 -0.6203 -4.7972 16 1 -2.2566 -0.2839 -4.3968 17 6 -0.6937 0.0959 -5.8003 18 7 0.4567 -0.3142 -6.2881 19 14 -1.4913 1.6477 -6.4674 20 1 -1.0254 2.8198 -5.6838 21 1 -1.1149 1.8241 -7.8931 22 1 -2.9676 1.5327 -6.3558 23 6 -1.5526 -2.4701 -3.1628 24 6 -0.8994 -3.7415 -2.6174 25 6 0.8989 -2.7865 1.4030 26 6 1.1483 -1.7276 2.4788 27 6 1.9202 -3.0483 2.5117 28 1 -0.3633 -0.0742 -1.0250 29 1 -0.3634 -0.8505 0.5768 30 1 -0.3633 0.9248 0.4482 31 1 3.9753 2.1528 0.0009 32 1 5.3057 0.0801 0.0024 33 1 4.1366 -2.1138 -0.0081 34 1 -0.5659 -2.5503 -0.4754 35 1 0.9394 -4.3060 -1.6471 36 1 2.3365 -2.5595 -2.7179 37 1 1.4752 -3.5262 -3.9390 38 1 1.3349 -1.1054 -4.4586 39 1 0.5880 -0.8078 -2.8708 40 1 -0.5517 -2.5960 -5.0663 41 1 0.8916 0.1899 -6.9936 42 1 -2.5311 -2.7129 -3.5771 43 1 -1.6693 -1.7467 -2.3558 44 1 -0.7825 -4.4650 -3.4243 45 1 -1.5294 -4.1674 -1.8365 46 1 -0.0418 -3.3355 1.4453 47 1 1.6962 -0.8320 2.1860 48 1 0.3717 -1.5798 3.2292 49 1 1.6512 -3.7693 3.2837 50 1 2.9755 -3.0218 2.2404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:08 Heat of formation + Delta-G solvation = 38.509856 kcal Electronic energy + Delta-G solvation = -28152.097632 eV Core-core repulsion = 24757.711059 eV Total energy + Delta-G solvation = -3394.386572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69670 -39.76844 -38.39901 -35.66812 -34.16598 -33.74102 -32.65604 -31.27602 -30.23688 -28.72547 -26.84681 -25.72856 -23.97609 -23.20405 -23.02424 -22.81563 -22.19433 -20.89336 -19.72697 -18.32539 -17.37676 -17.32220 -17.11602 -16.63168 -16.35518 -15.89817 -15.57843 -15.19959 -14.97128 -14.64887 -14.46414 -14.04806 -14.03635 -13.80556 -13.66571 -13.24685 -13.11129 -13.09715 -12.86162 -12.74800 -12.67824 -12.49138 -12.33881 -12.28750 -12.12661 -11.82886 -11.76449 -11.53683 -11.27631 -11.04129 -10.91208 -10.63067 -10.56251 -10.33117 -10.26417 -10.18917 -9.47289 -9.04528 -8.01327 -6.13552 0.34716 0.50020 1.38103 1.40171 1.48578 2.45504 2.81469 2.96008 3.24976 3.38867 3.61035 3.78891 3.93942 4.04848 4.10268 4.12092 4.14810 4.21966 4.23404 4.34201 4.37700 4.61082 4.66168 4.75554 4.80080 4.83680 4.85451 4.85782 4.95097 4.98277 5.00567 5.04285 5.08403 5.10372 5.20402 5.27313 5.27961 5.30632 5.35886 5.40045 5.48267 5.51510 5.58751 5.69550 5.75053 5.90378 5.97536 6.23489 6.31497 6.37917 6.55102 6.72013 7.01811 7.25791 7.53363 9.01514 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.004990 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.186030 B = 5610.317405 C = 6557.206832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.147 3.853 3 N -0.527 5.527 4 C 0.074 3.926 5 C -0.183 4.183 6 C -0.087 4.087 7 C -0.111 4.111 8 C 0.166 3.834 9 H 0.077 0.923 10 N -0.671 5.671 11 C 0.106 3.894 12 C -0.097 4.097 13 C -0.076 4.076 14 C 0.050 3.950 15 C -0.523 4.523 16 H 0.047 0.953 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.941 3.059 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.163 4.163 26 C -0.181 4.181 27 C -0.162 4.162 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.351 0.649 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.035 0.965 40 H -0.020 1.020 41 H 0.255 0.745 42 H 0.033 0.967 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -7.673 19.223 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.010 3.990 3 N -0.237 5.237 4 C -0.083 4.083 5 C -0.202 4.202 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.056 3.944 9 H 0.095 0.905 10 N -0.304 5.304 11 C -0.003 4.003 12 C -0.135 4.135 13 C -0.115 4.115 14 C 0.032 3.968 15 C -0.561 4.561 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.768 3.232 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.130 4.130 24 C -0.148 4.148 25 C -0.182 4.182 26 C -0.218 4.218 27 C -0.199 4.199 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.054 0.946 40 H -0.002 1.002 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.142 0.858 47 H 0.094 0.906 48 H 0.119 0.881 49 H 0.128 0.872 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.033 -6.344 18.713 20.390 hybrid contribution 0.234 -0.131 -0.778 0.823 sum 5.267 -6.474 17.935 19.782 Atomic orbital electron populations 1.20704 0.88665 1.01788 1.02911 1.21206 0.97479 0.87672 0.92661 1.67510 1.11232 1.30765 1.14214 1.23038 0.89361 0.99754 0.96117 1.22282 1.02379 0.92920 1.02635 1.21746 0.93823 0.99266 0.96440 1.20743 0.94038 0.96355 1.00229 1.19918 0.92302 0.92216 0.90008 0.90528 1.60541 1.04512 1.53523 1.11837 1.21456 0.95602 0.92020 0.91260 1.21472 0.97420 0.97738 0.96869 1.21060 0.97625 0.95580 0.97205 1.18576 0.93028 0.93137 0.92098 1.21657 1.05814 1.10220 1.18443 0.93444 1.25666 0.95488 1.00266 0.97221 1.70054 1.17276 1.40416 1.28105 0.85809 0.79279 0.80706 0.77407 1.20843 1.21071 1.19046 1.21363 0.97058 0.96510 0.98099 1.21675 0.95618 0.97295 1.00225 1.22822 1.01454 1.04312 0.89586 1.23041 1.03819 0.93297 1.01634 1.22987 0.97275 0.99135 1.00546 0.91223 0.88699 0.93292 0.81750 0.82542 0.83333 0.82622 0.92489 0.94346 0.94333 0.95093 0.94649 1.00191 0.93629 0.94813 0.92210 0.92626 0.90068 0.85760 0.90611 0.88064 0.87194 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.54 8.24 71.23 0.59 -1.95 16 2 C 0.15 4.67 5.21 42.54 0.22 4.89 16 3 N -0.53 -18.04 10.27 -183.89 -1.89 -19.93 16 4 C 0.07 2.08 11.18 84.68 0.95 3.02 16 5 C -0.18 -4.33 10.11 22.36 0.23 -4.11 16 6 C -0.09 -2.09 9.81 22.47 0.22 -1.86 16 7 C -0.11 -2.95 3.40 -19.77 -0.07 -3.02 16 8 C 0.17 3.67 2.34 44.17 0.10 3.77 16 9 H 0.08 1.64 7.07 -2.38 -0.02 1.63 16 10 N -0.67 -17.24 2.27 -473.29 -1.07 -18.31 16 11 C 0.11 3.02 2.69 44.92 0.12 3.14 16 12 C -0.10 -3.67 5.53 30.59 0.17 -3.50 16 13 C -0.08 -3.72 4.82 30.59 0.15 -3.58 16 14 C 0.05 2.53 2.10 -11.54 -0.02 2.51 16 15 C -0.52 -29.85 8.56 25.60 0.22 -29.63 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 17 C 0.01 0.66 5.30 84.66 0.45 1.10 16 18 N -0.92 -55.91 11.32 21.45 0.24 -55.67 16 19 Si 0.94 46.10 29.54 68.60 2.03 48.13 16 20 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 C -0.09 -3.64 4.98 30.59 0.15 -3.49 16 24 C -0.11 -3.29 5.30 30.59 0.16 -3.12 16 25 C -0.16 -2.74 4.61 -10.79 -0.05 -2.79 16 26 C -0.18 -3.27 8.49 30.59 0.26 -3.01 16 27 C -0.16 -2.39 10.13 30.59 0.31 -2.08 16 28 H 0.07 2.56 6.99 -2.39 -0.02 2.55 16 29 H 0.09 2.32 4.45 -2.39 -0.01 2.31 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.15 2.76 8.05 -2.91 -0.02 2.73 16 34 H 0.35 7.82 6.49 -89.69 -0.58 7.24 16 35 H 0.06 1.36 7.47 -2.38 -0.02 1.35 16 36 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.03 1.78 6.07 -2.39 -0.01 1.77 16 39 H 0.03 1.78 6.86 -2.38 -0.02 1.76 16 40 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 41 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 2.31 7.48 -2.39 -0.02 2.29 16 44 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 46 H 0.12 1.75 7.80 -2.39 -0.02 1.73 16 47 H 0.08 1.77 5.52 -2.39 -0.01 1.76 16 48 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -68.64 375.28 3.80 -64.84 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.34 Total: 24.65 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 4.15 Total: -43.71 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -2.72 Total: -93.91 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -68.64 3.80 -64.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.351 kcal (2) G-P(sol) polarization free energy of solvation -68.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds