Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38226 * 120.41798 * 2 1 4 4 N 1.31849 * 120.76507 * 179.97438 * 3 2 1 5 5 C 1.31889 * 121.72684 * 359.97438 * 4 3 2 6 6 C 1.38179 * 120.76135 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41561 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 159.99959 * 7 6 5 9 9 N 1.46896 * 109.46997 * 39.99897 * 7 6 5 10 10 C 1.46903 * 110.99908 * 155.00060 * 9 7 6 11 11 C 1.52998 * 109.47147 * 275.00225 * 10 9 7 12 12 C 1.52999 * 109.47096 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47344 * 60.00008 * 12 11 10 14 14 C 1.50700 * 109.47060 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99521 * 119.99728 * 14 13 12 16 16 C 1.37875 * 120.00239 * 300.00039 * 14 13 12 17 17 N 1.31513 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99835 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47159 * 59.99600 * 18 16 14 20 20 H 1.48498 * 109.47067 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47248 * 299.99729 * 18 16 14 22 22 C 1.53002 * 109.46664 * 300.00060 * 13 12 11 23 23 C 1.52995 * 109.47247 * 154.99976 * 10 9 7 24 24 C 1.53000 * 109.46912 * 280.00187 * 7 6 5 25 25 C 1.52999 * 117.49997 * 8.61880 * 24 7 6 26 26 C 1.52999 * 60.00262 * 252.51187 * 25 24 7 27 27 C 1.38624 * 120.42088 * 180.24828 * 2 1 3 28 28 H 1.09001 * 109.46996 * 90.00256 * 1 2 3 29 29 H 1.09000 * 109.47209 * 210.00175 * 1 2 3 30 30 H 1.09001 * 109.47567 * 329.99921 * 1 2 3 31 31 H 1.08008 * 119.61536 * 359.95033 * 3 2 1 32 32 H 1.07992 * 119.61849 * 180.02562 * 5 4 3 33 33 H 1.00895 * 111.00219 * 31.05155 * 9 7 6 34 34 H 1.09001 * 109.46941 * 35.00074 * 10 9 7 35 35 H 1.09001 * 109.47077 * 299.99766 * 11 10 9 36 36 H 1.09000 * 109.47197 * 59.99804 * 11 10 9 37 37 H 1.08997 * 109.47131 * 299.99125 * 12 11 10 38 38 H 1.09007 * 109.46937 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47170 * 59.99950 * 13 12 11 40 40 H 0.96997 * 119.99938 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.46660 * 299.99358 * 22 13 12 42 42 H 1.09000 * 109.46844 * 179.97438 * 22 13 12 43 43 H 1.08998 * 109.47430 * 300.00269 * 23 10 9 44 44 H 1.09001 * 109.47069 * 60.00177 * 23 10 9 45 45 H 1.09000 * 115.54936 * 154.33611 * 24 7 6 46 46 H 1.09001 * 117.50048 * 0.02562 * 25 24 7 47 47 H 1.09003 * 117.49698 * 145.02402 * 25 24 7 48 48 H 1.09002 * 117.50333 * 252.51406 * 26 25 24 49 49 H 1.08999 * 117.49775 * 107.48537 * 26 25 24 50 50 H 1.08000 * 120.79133 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1470 0.0016 7 6 4.4027 -2.4191 0.0022 8 1 3.7822 -3.2435 0.3536 9 7 5.5605 -2.2634 0.8928 10 6 6.0212 -3.5667 1.3900 11 6 5.2070 -3.9584 2.6247 12 6 5.6864 -5.3161 3.1421 13 6 7.1674 -5.2256 3.5155 14 6 7.6394 -6.5627 4.0258 15 1 8.4401 -7.0817 3.5198 16 6 7.0491 -7.1235 5.1384 17 7 6.0744 -6.4913 5.7547 18 14 7.6347 -8.7806 5.7712 19 1 9.0720 -8.6922 6.1337 20 1 6.8438 -9.1606 6.9693 21 1 7.4533 -9.8068 4.7132 22 6 7.9816 -4.8339 2.2808 23 6 7.5021 -3.4756 1.7635 24 6 4.8881 -2.7156 -1.4182 25 6 4.6688 -1.6357 -2.4796 26 6 3.8255 -2.9121 -2.5013 27 6 2.2089 -1.1954 -0.0052 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6673 2.1277 -0.0008 32 1 5.3046 0.1287 0.0023 33 1 5.3477 -1.6397 1.6568 34 1 5.8881 -4.3197 0.6131 35 1 5.3401 -3.2055 3.4015 36 1 4.1520 -4.0233 2.3586 37 1 5.5528 -6.0688 2.3652 38 1 5.1066 -5.5949 4.0221 39 1 7.3009 -4.4729 4.2925 40 1 5.6593 -6.8857 6.5377 41 1 7.8481 -5.5867 1.5039 42 1 9.0366 -4.7690 2.5468 43 1 8.0822 -3.1966 0.8839 44 1 7.6352 -2.7227 2.5403 45 1 5.7959 -3.3147 -1.4893 46 1 4.1791 -0.7138 -2.1659 47 1 5.4326 -1.5240 -3.2492 48 1 4.0344 -3.6401 -3.2852 49 1 2.7806 -2.8301 -2.2020 50 1 1.6888 -2.1419 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = 22.407418 kcal Electronic energy + Delta-G solvation = -26561.246715 eV Core-core repulsion = 23166.161889 eV Total energy + Delta-G solvation = -3395.084826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67974 -39.84096 -38.45443 -35.93763 -34.50431 -34.29349 -32.75268 -31.31142 -30.07410 -28.17169 -27.18647 -25.56133 -24.49486 -23.30556 -23.09182 -22.93405 -22.12742 -20.51880 -20.24392 -18.37841 -17.91702 -17.54438 -17.14388 -16.84279 -16.51911 -15.62210 -15.20533 -15.12284 -14.93814 -14.79637 -14.56280 -14.34723 -14.09414 -14.02334 -13.97203 -13.55725 -13.46776 -13.19461 -12.95543 -12.88238 -12.86120 -12.61840 -12.37160 -12.35026 -12.06998 -11.98021 -11.76783 -11.73061 -11.23165 -11.17278 -10.97416 -10.76118 -10.62359 -10.52613 -10.36809 -10.34329 -9.69069 -9.29071 -8.06313 -6.20435 0.13904 0.31566 1.40944 1.41738 1.49345 2.43719 2.78301 2.81551 3.19312 3.25616 3.45195 3.71290 3.88761 3.93078 3.98221 4.03458 4.06239 4.13396 4.16671 4.20768 4.32646 4.46740 4.54792 4.60270 4.64517 4.71514 4.78585 4.78894 4.81305 4.82722 4.87218 4.89811 4.98396 5.04563 5.13076 5.18052 5.25166 5.26476 5.27272 5.30706 5.33642 5.38411 5.42413 5.49156 5.61966 5.69518 5.79504 6.05869 6.12287 6.22513 6.41396 6.45104 6.92696 7.04423 7.47487 8.96768 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002952 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.132318 B = 9483.200159 C =10002.607854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C 0.082 3.918 4 N -0.505 5.505 5 C 0.103 3.897 6 C -0.129 4.129 7 C 0.166 3.834 8 H 0.052 0.948 9 N -0.669 5.669 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.096 4.096 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.101 4.101 23 C -0.091 4.091 24 C -0.139 4.139 25 C -0.173 4.173 26 C -0.172 4.172 27 C -0.082 4.082 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.341 0.659 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.027 0.973 38 H 0.054 0.946 39 H -0.011 1.011 40 H 0.259 0.741 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 12.718 -15.959 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.075 4.075 4 N -0.213 5.213 5 C -0.054 4.054 6 C -0.132 4.132 7 C 0.056 3.944 8 H 0.070 0.930 9 N -0.299 5.299 10 C -0.003 4.003 11 C -0.170 4.170 12 C -0.135 4.135 13 C 0.028 3.972 14 C -0.573 4.573 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.157 4.157 25 C -0.210 4.210 26 C -0.210 4.210 27 C -0.108 4.108 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.008 0.992 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.123 0.877 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.143 13.545 -16.326 23.513 hybrid contribution -0.686 -2.084 1.548 2.685 sum -10.829 11.461 -14.777 21.610 Atomic orbital electron populations 1.20778 0.88099 1.04045 1.03549 1.21187 0.99043 0.93357 1.00069 1.23109 0.89713 0.98734 0.95976 1.67739 1.09330 1.31593 1.12619 1.22649 1.00714 0.86941 0.95068 1.20835 0.94577 0.96179 1.01562 1.19804 0.89381 0.92717 0.92540 0.93004 1.60686 1.34589 1.12083 1.22530 1.21417 0.94506 0.89997 0.94418 1.22144 0.98612 0.98253 0.98002 1.21319 0.99115 0.94176 0.98874 1.18615 0.92359 0.94006 0.92230 1.21636 1.18229 1.05664 1.11801 0.93157 1.25729 0.95221 1.00785 0.96937 1.70016 1.25400 1.39741 1.20512 0.85742 0.78407 0.80550 0.77746 1.19788 1.21055 1.19637 1.21502 0.98605 0.96220 0.97606 1.21384 0.94894 0.96415 1.00232 1.22162 1.00738 1.03624 0.89225 1.23021 1.03205 0.93273 1.01519 1.23007 0.96622 1.00220 1.01125 1.21629 0.93118 0.99306 0.96772 0.89706 0.90906 0.89880 0.80913 0.82538 0.83990 0.90783 0.93785 0.93184 0.95453 0.92787 0.99240 0.93228 0.93335 0.93690 0.90858 0.93252 0.87733 0.89669 0.88495 0.87793 0.88827 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.04 71.24 0.71 -0.39 16 2 C -0.13 -2.24 5.90 -19.78 -0.12 -2.36 16 3 C 0.08 1.53 10.86 84.69 0.92 2.45 16 4 N -0.50 -11.95 10.36 -195.85 -2.03 -13.98 16 5 C 0.10 2.38 8.43 84.67 0.71 3.10 16 6 C -0.13 -2.77 3.17 -19.77 -0.06 -2.83 16 7 C 0.17 3.79 2.44 44.17 0.11 3.90 16 8 H 0.05 1.28 7.01 -2.39 -0.02 1.27 16 9 N -0.67 -17.26 5.46 -473.31 -2.58 -19.85 16 10 C 0.11 3.30 2.28 44.91 0.10 3.40 16 11 C -0.13 -4.83 5.16 30.59 0.16 -4.67 16 12 C -0.10 -4.50 4.98 30.59 0.15 -4.35 16 13 C 0.05 2.32 2.10 -11.54 -0.02 2.29 16 14 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 18 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.10 -4.13 5.15 30.61 0.16 -3.97 16 23 C -0.09 -3.05 5.53 30.61 0.17 -2.88 16 24 C -0.14 -2.95 5.73 -10.79 -0.06 -3.01 16 25 C -0.17 -3.36 9.50 30.59 0.29 -3.07 16 26 C -0.17 -3.09 10.02 30.60 0.31 -2.78 16 27 C -0.08 -1.55 9.06 22.47 0.20 -1.34 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.16 3.68 7.72 -2.91 -0.02 3.66 16 33 H 0.34 9.01 7.74 -89.70 -0.69 8.32 16 34 H 0.07 2.33 7.48 -2.39 -0.02 2.31 16 35 H 0.04 1.70 8.13 -2.39 -0.02 1.68 16 36 H 0.05 1.70 7.43 -2.39 -0.02 1.69 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 2.92 6.07 -2.38 -0.01 2.91 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 2.43 7.94 -2.39 -0.02 2.41 16 46 H 0.08 1.82 5.41 -2.39 -0.01 1.80 16 47 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.09 1.59 7.69 -2.39 -0.02 1.58 16 50 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -61.62 386.43 2.27 -59.35 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.21 Total: 26.74 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 4.40 Total: -45.03 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -4.37 Total: -87.09 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.62 2.27 -59.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.760 kcal (2) G-P(sol) polarization free energy of solvation -61.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds