Wall clock time and date at job start Tue Mar 31 2020 11:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00216 * 3 2 1 6 6 H 1.48500 * 109.46870 * 60.00343 * 3 2 1 7 7 C 1.37875 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46790 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47290 * 300.00166 * 11 10 9 13 13 N 1.46896 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.46907 * 111.00370 * 84.99498 * 13 12 11 15 15 C 1.53003 * 109.47087 * 180.02562 * 14 13 12 16 16 C 1.52997 * 115.54836 * 39.47740 * 15 14 13 17 17 C 1.50696 * 109.47655 * 64.30646 * 16 15 14 18 18 C 1.38673 * 120.42079 * 85.29765 * 17 16 15 19 19 C 1.38631 * 118.41971 * 180.02562 * 18 17 16 20 20 C 1.38223 * 119.16387 * 0.02562 * 19 18 17 21 21 N 1.31862 * 120.76417 * 359.97438 * 20 19 18 22 22 C 1.31887 * 121.72338 * 359.70929 * 21 20 19 23 23 C 1.52998 * 117.50024 * 253.76440 * 15 14 13 24 24 C 1.52996 * 117.49644 * 185.14161 * 15 14 13 25 25 C 1.53000 * 109.47411 * 59.99792 * 12 11 10 26 26 C 1.52996 * 109.46698 * 299.99976 * 9 7 2 27 27 H 0.96994 * 120.00384 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46722 * 59.99921 * 9 7 2 29 29 H 1.08996 * 109.46605 * 299.99598 * 10 9 7 30 30 H 1.08995 * 109.46981 * 60.00001 * 10 9 7 31 31 H 1.09007 * 109.46926 * 60.00007 * 11 10 9 32 32 H 1.09002 * 109.47123 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.47006 * 299.99791 * 12 11 10 34 34 H 1.00901 * 111.00492 * 208.95249 * 13 12 11 35 35 H 1.08998 * 109.47005 * 300.00389 * 14 13 12 36 36 H 1.08997 * 109.46534 * 59.99925 * 14 13 12 37 37 H 1.09003 * 109.47106 * 184.30908 * 16 15 14 38 38 H 1.09004 * 109.46920 * 304.30077 * 16 15 14 39 39 H 1.07997 * 120.78456 * 359.97438 * 18 17 16 40 40 H 1.07998 * 120.41312 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.62264 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.61926 * 180.30697 * 22 21 20 43 43 H 1.09000 * 117.49270 * 0.02562 * 23 15 14 44 44 H 1.08991 * 117.49863 * 145.02492 * 23 15 14 45 45 H 1.08996 * 117.50227 * 214.98197 * 24 15 14 46 46 H 1.09007 * 117.49706 * 359.97438 * 24 15 14 47 47 H 1.09004 * 109.47388 * 179.97438 * 25 12 11 48 48 H 1.09002 * 109.46879 * 60.00746 * 25 12 11 49 49 H 1.08997 * 109.47489 * 299.99475 * 26 9 7 50 50 H 1.09005 * 109.47312 * 60.00143 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 0.6002 -5.0684 1.2468 13 7 -0.1339 -6.3408 1.2466 14 6 0.6794 -7.4179 1.8266 15 6 -0.1167 -8.7244 1.8085 16 6 -0.9599 -8.9659 0.5549 17 6 -0.0536 -9.1046 -0.6411 18 6 0.5099 -10.3318 -0.9566 19 6 1.3378 -10.4121 -2.0656 20 6 1.5728 -9.2743 -2.8145 21 7 1.0197 -8.1236 -2.4848 22 6 0.2223 -8.0115 -1.4403 23 6 -0.6697 -9.2333 3.1412 24 6 0.5134 -9.9450 2.4821 25 6 -0.3941 -3.9054 1.2466 26 6 0.3710 -2.5810 1.2471 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 2.8726 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8890 31 1 0.8541 -5.0447 -0.8923 32 1 2.1887 -5.8156 -0.0023 33 1 1.2265 -5.0108 2.1371 34 1 -1.0139 -6.2507 1.7320 35 1 1.5910 -7.5402 1.2416 36 1 0.9387 -7.1641 2.8544 37 1 -1.5409 -9.8799 0.6784 38 1 -1.6352 -8.1238 0.4034 39 1 0.3092 -11.2039 -0.3521 40 1 1.7933 -11.3518 -2.3409 41 1 2.2169 -9.3283 -3.6797 42 1 -0.2165 -7.0533 -1.2041 43 1 -0.4665 -8.6370 4.0308 44 1 -1.6344 -9.7402 3.1252 45 1 0.3270 -10.9202 2.0324 46 1 1.4955 -9.8174 2.9377 47 1 -1.0215 -3.9636 2.1361 48 1 -1.0204 -3.9631 0.3564 49 1 0.9973 -2.5239 2.1374 50 1 -0.3374 -1.7526 1.2474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:04 Heat of formation + Delta-G solvation = 34.486101 kcal Electronic energy + Delta-G solvation = -26764.811208 eV Core-core repulsion = 23370.250153 eV Total energy + Delta-G solvation = -3394.561055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29293 -38.72961 -37.64797 -34.35723 -33.04206 -32.11386 -31.73517 -29.77534 -28.75114 -27.36474 -25.54967 -23.72963 -23.47543 -22.67821 -22.19465 -21.53161 -20.32544 -19.13193 -18.54249 -16.92406 -16.36818 -16.24900 -15.91908 -15.25293 -15.08377 -14.66491 -14.53853 -14.05753 -13.84550 -13.49047 -13.33420 -13.05842 -13.02933 -12.79432 -12.54887 -12.37707 -12.06372 -11.83161 -11.66153 -11.42793 -11.29704 -11.16821 -10.97632 -10.74482 -10.51081 -10.45651 -10.18940 -10.07243 -9.88234 -9.72749 -9.66331 -9.30639 -9.26333 -8.84382 -8.81453 -8.59302 -8.25813 -8.10269 -5.91424 -3.96842 1.19690 1.34753 3.33214 3.41324 3.45578 3.52979 3.90928 4.24946 4.49662 4.49793 4.60221 4.72916 4.79696 4.87136 4.89459 5.02168 5.08873 5.20582 5.37875 5.43057 5.46393 5.48668 5.52906 5.61018 5.67809 5.74290 5.83769 5.90220 5.92147 6.00166 6.03986 6.07508 6.13655 6.25422 6.37368 6.43338 6.46371 6.51171 6.65746 6.75435 6.84156 6.92984 7.04252 7.21854 7.31416 7.42058 7.60438 7.67135 7.82751 8.11956 8.13671 8.23229 8.55914 9.07733 9.67429 11.14088 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003231 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.934789 B = 8664.201678 C = 9689.076897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.096 4.096 12 C 0.092 3.908 13 N -0.683 5.683 14 C 0.099 3.901 15 C -0.111 4.111 16 C -0.028 4.028 17 C -0.122 4.122 18 C -0.078 4.078 19 C -0.182 4.182 20 C 0.088 3.912 21 N -0.482 5.482 22 C 0.124 3.876 23 C -0.175 4.175 24 C -0.174 4.174 25 C -0.115 4.115 26 C -0.106 4.106 27 H 0.258 0.742 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.337 0.663 35 H 0.071 0.929 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.029 0.971 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -22.925 2.967 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.134 4.134 12 C -0.016 4.016 13 N -0.314 5.314 14 C -0.030 4.030 15 C -0.112 4.112 16 C -0.066 4.066 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.202 4.202 20 C -0.069 4.069 21 N -0.190 5.190 22 C -0.033 4.033 23 C -0.212 4.212 24 C -0.211 4.211 25 C -0.153 4.153 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.187 0.813 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.996 -22.206 1.799 22.368 hybrid contribution 0.443 0.258 1.599 1.679 sum -1.553 -21.947 3.398 22.263 Atomic orbital electron populations 1.69882 1.05789 1.26046 1.51298 1.24960 0.94823 0.98903 0.95353 0.86620 0.80218 0.84186 0.77470 1.19893 1.21103 1.21187 1.21304 0.92894 0.90883 1.49750 0.92882 1.18643 0.92617 0.91430 0.94209 1.21624 0.98631 0.94627 0.99792 1.21490 0.97454 0.97263 0.97222 1.21596 0.95071 0.87482 0.97474 1.60552 1.06734 1.05509 1.58578 1.21415 0.95913 0.88750 0.96968 1.21476 1.01778 0.94986 0.92932 1.19894 0.95211 1.02271 0.89228 1.20769 0.99712 0.94130 0.97790 1.21409 0.95526 0.97425 0.96094 1.22039 1.00858 1.00128 0.97198 1.22749 0.97188 0.88265 0.98717 1.67809 1.08021 1.26521 1.16687 1.23132 0.92509 0.99000 0.88690 1.23117 0.98104 1.03967 0.96036 1.22976 0.97681 0.96316 1.04139 1.21776 0.97313 0.96004 1.00233 1.21566 0.99518 0.94649 0.98723 0.93240 0.95571 0.93486 0.93976 0.91880 0.94343 0.94791 0.84506 0.91029 0.95465 0.91689 0.89068 0.85763 0.85504 0.83405 0.81333 0.88906 0.88822 0.88947 0.89013 0.94352 0.92006 0.95169 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.11 -2.32 5.14 -26.73 -0.14 -2.46 16 11 C -0.10 -1.74 5.42 -26.73 -0.15 -1.88 16 12 C 0.09 1.51 2.49 -67.72 -0.17 1.34 16 13 N -0.68 -8.76 4.25 -106.72 -0.45 -9.22 16 14 C 0.10 1.16 5.10 -3.82 -0.02 1.14 16 15 C -0.11 -1.05 1.87 -154.51 -0.29 -1.33 16 16 C -0.03 -0.26 4.89 -27.89 -0.14 -0.40 16 17 C -0.12 -1.35 4.86 -104.48 -0.51 -1.86 16 18 C -0.08 -0.77 9.88 -39.28 -0.39 -1.16 16 19 C -0.18 -1.78 10.11 -39.44 -0.40 -2.18 16 20 C 0.09 1.02 11.18 -17.54 -0.20 0.83 16 21 N -0.48 -7.01 10.36 -13.25 -0.14 -7.15 16 22 C 0.12 1.67 10.50 -17.55 -0.18 1.49 16 23 C -0.18 -1.43 9.87 -26.73 -0.26 -1.69 16 24 C -0.17 -1.44 9.97 -26.73 -0.27 -1.71 16 25 C -0.12 -2.13 5.19 -26.76 -0.14 -2.27 16 26 C -0.11 -2.46 4.97 -26.76 -0.13 -2.59 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.19 7.76 -51.93 -0.40 0.79 16 32 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 33 H 0.03 0.59 7.80 -51.93 -0.40 0.18 16 34 H 0.34 4.03 8.34 -39.29 -0.33 3.70 16 35 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 36 H 0.03 0.33 7.86 -51.93 -0.41 -0.08 16 37 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.09 0.90 7.43 -51.93 -0.39 0.52 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.17 2.44 6.87 -52.49 -0.36 2.08 16 43 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -28.91 390.88 -11.88 -40.79 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.83 Total: 4.64 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.96 Total: -26.58 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.04 Total: -41.27 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.91 -11.88 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.280 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds