Wall clock time and date at job start Tue Mar 31 2020 11:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00216 * 3 2 1 6 6 H 1.48500 * 109.46870 * 60.00343 * 3 2 1 7 7 C 1.37875 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46790 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47290 * 300.00166 * 11 10 9 13 13 N 1.46896 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.46907 * 111.00370 * 84.99498 * 13 12 11 15 15 C 1.53003 * 109.47087 * 180.02562 * 14 13 12 16 16 C 1.52997 * 115.54836 * 39.47740 * 15 14 13 17 17 C 1.50696 * 109.47655 * 64.30646 * 16 15 14 18 18 C 1.38673 * 120.42079 * 85.29765 * 17 16 15 19 19 C 1.38631 * 118.41971 * 180.02562 * 18 17 16 20 20 C 1.38223 * 119.16387 * 0.02562 * 19 18 17 21 21 N 1.31862 * 120.76417 * 359.97438 * 20 19 18 22 22 C 1.31887 * 121.72338 * 359.70929 * 21 20 19 23 23 C 1.52998 * 117.50024 * 253.76440 * 15 14 13 24 24 C 1.52996 * 117.49644 * 185.14161 * 15 14 13 25 25 C 1.53000 * 109.47411 * 59.99792 * 12 11 10 26 26 C 1.52996 * 109.46698 * 299.99976 * 9 7 2 27 27 H 0.96994 * 120.00384 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46722 * 59.99921 * 9 7 2 29 29 H 1.08996 * 109.46605 * 299.99598 * 10 9 7 30 30 H 1.08995 * 109.46981 * 60.00001 * 10 9 7 31 31 H 1.09007 * 109.46926 * 60.00007 * 11 10 9 32 32 H 1.09002 * 109.47123 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.47006 * 299.99791 * 12 11 10 34 34 H 1.00901 * 111.00492 * 208.95249 * 13 12 11 35 35 H 1.08998 * 109.47005 * 300.00389 * 14 13 12 36 36 H 1.08997 * 109.46534 * 59.99925 * 14 13 12 37 37 H 1.09003 * 109.47106 * 184.30908 * 16 15 14 38 38 H 1.09004 * 109.46920 * 304.30077 * 16 15 14 39 39 H 1.07997 * 120.78456 * 359.97438 * 18 17 16 40 40 H 1.07998 * 120.41312 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.62264 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.61926 * 180.30697 * 22 21 20 43 43 H 1.09000 * 117.49270 * 0.02562 * 23 15 14 44 44 H 1.08991 * 117.49863 * 145.02492 * 23 15 14 45 45 H 1.08996 * 117.50227 * 214.98197 * 24 15 14 46 46 H 1.09007 * 117.49706 * 359.97438 * 24 15 14 47 47 H 1.09004 * 109.47388 * 179.97438 * 25 12 11 48 48 H 1.09002 * 109.46879 * 60.00746 * 25 12 11 49 49 H 1.08997 * 109.47489 * 299.99475 * 26 9 7 50 50 H 1.09005 * 109.47312 * 60.00143 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 0.6002 -5.0684 1.2468 13 7 -0.1339 -6.3408 1.2466 14 6 0.6794 -7.4179 1.8266 15 6 -0.1167 -8.7244 1.8085 16 6 -0.9599 -8.9659 0.5549 17 6 -0.0536 -9.1046 -0.6411 18 6 0.5099 -10.3318 -0.9566 19 6 1.3378 -10.4121 -2.0656 20 6 1.5728 -9.2743 -2.8145 21 7 1.0197 -8.1236 -2.4848 22 6 0.2223 -8.0115 -1.4403 23 6 -0.6697 -9.2333 3.1412 24 6 0.5134 -9.9450 2.4821 25 6 -0.3941 -3.9054 1.2466 26 6 0.3710 -2.5810 1.2471 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 2.8726 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8890 31 1 0.8541 -5.0447 -0.8923 32 1 2.1887 -5.8156 -0.0023 33 1 1.2265 -5.0108 2.1371 34 1 -1.0139 -6.2507 1.7320 35 1 1.5910 -7.5402 1.2416 36 1 0.9387 -7.1641 2.8544 37 1 -1.5409 -9.8799 0.6784 38 1 -1.6352 -8.1238 0.4034 39 1 0.3092 -11.2039 -0.3521 40 1 1.7933 -11.3518 -2.3409 41 1 2.2169 -9.3283 -3.6797 42 1 -0.2165 -7.0533 -1.2041 43 1 -0.4665 -8.6370 4.0308 44 1 -1.6344 -9.7402 3.1252 45 1 0.3270 -10.9202 2.0324 46 1 1.4955 -9.8174 2.9377 47 1 -1.0215 -3.9636 2.1361 48 1 -1.0204 -3.9631 0.3564 49 1 0.9973 -2.5239 2.1374 50 1 -0.3374 -1.7526 1.2474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:04 Heat of formation + Delta-G solvation = 20.693189 kcal Electronic energy + Delta-G solvation = -26765.409314 eV Core-core repulsion = 23370.250153 eV Total energy + Delta-G solvation = -3395.159161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13408 -39.86526 -38.88315 -35.90090 -33.95580 -33.85043 -32.57033 -31.44739 -30.38497 -28.22193 -27.02192 -25.34707 -24.31786 -23.40636 -23.19735 -22.92833 -21.96244 -20.47953 -19.71667 -18.38993 -17.74682 -17.21763 -16.84904 -16.67134 -16.23178 -15.93652 -15.60894 -15.26394 -15.08897 -14.78968 -14.55756 -14.41940 -14.17340 -13.96334 -13.79658 -13.64437 -13.22197 -13.07765 -12.86727 -12.81680 -12.71499 -12.50328 -12.34893 -12.17272 -12.17015 -11.98589 -11.78496 -11.59490 -11.21246 -11.08091 -10.75284 -10.59308 -10.51299 -10.48854 -10.33825 -10.13745 -9.68681 -9.25528 -8.06252 -6.20099 0.36278 0.53453 1.38851 1.40688 1.52050 2.43854 2.82514 3.06428 3.18578 3.24405 3.74529 3.84887 3.95140 4.00161 4.06527 4.07980 4.15364 4.16335 4.25857 4.31955 4.41167 4.48485 4.57205 4.67113 4.74722 4.77407 4.77843 4.83190 4.85764 4.89200 5.01833 5.03531 5.05744 5.09201 5.11111 5.19378 5.21969 5.31727 5.34150 5.36507 5.38408 5.43016 5.50399 5.58621 5.63509 5.71907 6.01545 6.06202 6.16430 6.25372 6.43738 6.61431 6.92131 7.26204 7.47471 8.97610 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003231 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.934789 B = 8664.201678 C = 9689.076897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.048 3.952 10 C -0.102 4.102 11 C -0.081 4.081 12 C 0.107 3.893 13 N -0.674 5.674 14 C 0.104 3.896 15 C -0.121 4.121 16 C -0.023 4.023 17 C -0.120 4.120 18 C -0.078 4.078 19 C -0.173 4.173 20 C 0.067 3.933 21 N -0.524 5.524 22 C 0.098 3.902 23 C -0.164 4.164 24 C -0.166 4.166 25 C -0.104 4.104 26 C -0.098 4.098 27 H 0.260 0.740 28 H -0.009 1.009 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.347 0.653 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.024 0.976 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -25.676 4.302 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.029 3.971 10 C -0.140 4.140 11 C -0.119 4.119 12 C -0.002 4.002 13 N -0.305 5.305 14 C -0.025 4.025 15 C -0.121 4.121 16 C -0.061 4.061 17 C -0.122 4.122 18 C -0.104 4.104 19 C -0.193 4.193 20 C -0.089 4.089 21 N -0.233 5.233 22 C -0.058 4.058 23 C -0.201 4.201 24 C -0.204 4.204 25 C -0.142 4.142 26 C -0.136 4.136 27 H 0.069 0.931 28 H 0.009 0.991 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.166 0.834 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.180 0.820 42 H 0.166 0.834 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.068 -24.969 3.142 25.251 hybrid contribution 0.482 1.087 1.143 1.649 sum -1.586 -23.882 4.285 24.315 Atomic orbital electron populations 1.70018 1.07001 1.26887 1.51519 1.25713 0.95702 1.02187 0.94944 0.85622 0.79043 0.80029 0.77662 1.19450 1.20646 1.20411 1.21658 0.92866 0.92582 1.50284 0.93544 1.18597 0.92974 0.91963 0.93531 1.21497 0.97998 0.95152 0.99328 1.21297 0.97376 0.95451 0.97809 1.21266 0.94304 0.88458 0.96185 1.60412 1.06856 1.04010 1.59243 1.21350 0.95416 0.89516 0.96216 1.21300 1.02629 0.94323 0.93881 1.19887 0.94819 1.02991 0.88405 1.20904 0.99645 0.93919 0.97710 1.21788 0.94673 0.97751 0.96189 1.22387 0.99945 1.00582 0.96387 1.23117 0.97636 0.88334 0.99815 1.67694 1.09305 1.28506 1.17796 1.22941 0.93724 0.99303 0.89825 1.23171 0.98818 1.03342 0.94788 1.23061 0.97649 0.96309 1.03370 1.21597 0.97341 0.94351 1.00914 1.21341 0.98694 0.96255 0.97357 0.93109 0.99083 0.94432 0.93874 0.93116 0.93414 0.95016 0.83373 0.93045 0.95442 0.89440 0.90033 0.82672 0.82304 0.81964 0.83404 0.89107 0.87287 0.87242 0.89367 0.91969 0.92932 0.95730 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.94 11.32 21.45 0.24 -53.70 16 2 C 0.01 0.74 5.30 84.65 0.45 1.19 16 3 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -30.82 8.56 25.60 0.22 -30.61 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.05 2.49 2.10 -11.54 -0.02 2.47 16 10 C -0.10 -4.50 5.14 30.59 0.16 -4.35 16 11 C -0.08 -3.01 5.42 30.59 0.17 -2.84 16 12 C 0.11 3.49 2.49 44.91 0.11 3.60 16 13 N -0.67 -16.80 4.25 -491.56 -2.09 -18.89 16 14 C 0.10 2.30 5.10 86.30 0.44 2.74 16 15 C -0.12 -1.96 1.87 -52.18 -0.10 -2.06 16 16 C -0.02 -0.38 4.89 29.85 0.15 -0.23 16 17 C -0.12 -2.46 4.86 -19.77 -0.10 -2.56 16 18 C -0.08 -1.29 9.88 22.47 0.22 -1.07 16 19 C -0.17 -2.94 10.11 22.36 0.23 -2.72 16 20 C 0.07 1.53 11.18 84.68 0.95 2.48 16 21 N -0.52 -15.61 10.36 -195.83 -2.03 -17.64 16 22 C 0.10 2.70 10.50 84.67 0.89 3.59 16 23 C -0.16 -2.10 9.87 30.59 0.30 -1.80 16 24 C -0.17 -2.17 9.97 30.59 0.31 -1.87 16 25 C -0.10 -3.88 5.19 30.58 0.16 -3.72 16 26 C -0.10 -4.68 4.97 30.58 0.15 -4.53 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 2.01 7.76 -2.38 -0.02 1.99 16 32 H 0.05 1.68 7.45 -2.39 -0.02 1.67 16 33 H 0.03 1.07 7.80 -2.38 -0.02 1.05 16 34 H 0.35 7.76 8.34 -89.69 -0.75 7.01 16 35 H 0.05 1.35 7.44 -2.39 -0.02 1.34 16 36 H 0.03 0.61 7.86 -2.39 -0.02 0.59 16 37 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 38 H 0.08 1.50 7.43 -2.38 -0.02 1.48 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.15 4.52 6.87 -2.91 -0.02 4.50 16 43 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 44 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.06 2.02 8.12 -2.38 -0.02 2.01 16 48 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 Total: -1.00 -65.56 390.88 2.97 -62.59 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.15 Total: 22.98 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.67 Total: -42.28 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.88 Total: -90.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.56 2.97 -62.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.283 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds