Wall clock time and date at job start Tue Mar 31 2020 10:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48503 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47070 * 300.00155 * 3 2 1 6 6 H 1.48503 * 109.46919 * 59.99902 * 3 2 1 7 7 C 1.37883 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47199 * 299.99844 * 10 9 7 12 12 C 1.52993 * 109.47309 * 300.00246 * 11 10 9 13 13 N 1.46895 * 109.47267 * 180.02562 * 12 11 10 14 14 C 1.46633 * 111.00195 * 30.02926 * 13 12 11 15 15 C 1.50629 * 110.49388 * 70.90492 * 14 13 12 16 16 C 1.38737 * 118.42527 * 197.49386 * 15 14 13 17 17 C 1.38016 * 120.37737 * 180.23547 * 16 15 14 18 18 C 1.38254 * 119.86848 * 0.07663 * 17 16 15 19 19 C 1.38038 * 119.83043 * 359.89850 * 18 17 16 20 20 C 1.37831 * 121.84850 * 17.66311 * 15 14 13 21 21 C 1.50712 * 121.65839 * 359.31956 * 20 15 14 22 22 C 1.47154 * 111.00285 * 153.03826 * 13 12 11 23 23 H 1.09000 * 109.63462 * 188.09605 * 22 13 12 24 24 C 1.53000 * 109.62995 * 67.70751 * 22 13 12 25 25 N 1.46893 * 109.47113 * 52.54684 * 24 22 13 26 26 C 1.52999 * 109.47447 * 59.99541 * 12 11 10 27 27 C 1.52998 * 109.47274 * 59.99948 * 9 7 2 28 28 H 0.96996 * 119.99890 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46989 * 300.00059 * 9 7 2 30 30 H 1.08997 * 109.46859 * 179.97438 * 10 9 7 31 31 H 1.09006 * 109.46721 * 60.00203 * 10 9 7 32 32 H 1.08999 * 109.46766 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46679 * 59.99978 * 11 10 9 34 34 H 1.09007 * 109.46916 * 300.00016 * 12 11 10 35 35 H 1.09003 * 109.27184 * 310.65083 * 14 13 12 36 36 H 1.08993 * 109.24625 * 191.15029 * 14 13 12 37 37 H 1.07998 * 119.80709 * 0.25049 * 16 15 14 38 38 H 1.07994 * 120.06225 * 180.10254 * 17 16 15 39 39 H 1.07998 * 120.09114 * 179.88320 * 18 17 16 40 40 H 1.08001 * 119.82743 * 179.69303 * 19 18 17 41 41 H 1.08998 * 109.41181 * 256.92957 * 21 20 15 42 42 H 1.09007 * 109.30159 * 137.17240 * 21 20 15 43 43 H 1.09007 * 109.46905 * 172.54576 * 24 22 13 44 44 H 1.09001 * 109.46967 * 292.54591 * 24 22 13 45 45 H 1.00904 * 111.00260 * 56.04312 * 25 24 22 46 46 H 1.00902 * 110.99937 * 179.97438 * 25 24 22 47 47 H 1.09007 * 109.46674 * 60.00327 * 26 12 11 48 48 H 1.09002 * 109.47349 * 179.97438 * 26 12 11 49 49 H 1.08994 * 109.47240 * 179.97438 * 27 9 7 50 50 H 1.09004 * 109.47287 * 300.00314 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 3.1248 -3.5812 -1.2487 12 6 2.2452 -3.6622 -2.4979 13 7 3.0898 -3.5850 -3.6973 14 6 4.4181 -4.1511 -3.4420 15 6 4.3350 -5.6484 -3.3005 16 6 5.3944 -6.3150 -2.7021 17 6 5.3627 -7.6871 -2.5563 18 6 4.2702 -8.4026 -3.0101 19 6 3.2151 -7.7409 -3.6053 20 6 3.2449 -6.3620 -3.7501 21 6 2.0656 -5.6813 -4.3961 22 6 2.4543 -4.2691 -4.8347 23 1 3.1557 -4.3242 -5.6673 24 6 1.2050 -3.4980 -5.2655 25 7 1.5535 -2.0894 -5.4938 26 6 1.2510 -2.4993 -2.4979 27 6 0.3718 -2.5805 -1.2490 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 0.8903 30 1 1.7001 -4.6061 0.0010 31 1 2.8718 -3.6044 0.8906 32 1 3.8333 -4.4094 -1.2484 33 1 3.6698 -2.6372 -1.2487 34 1 1.7001 -4.6062 -2.4979 35 1 4.8203 -3.7248 -2.5229 36 1 5.0795 -3.9043 -4.2724 37 1 6.2487 -5.7570 -2.3482 38 1 6.1894 -8.2006 -2.0882 39 1 4.2425 -9.4766 -2.8996 40 1 2.3639 -8.3004 -3.9643 41 1 1.2439 -5.6252 -3.6822 42 1 1.7500 -6.2566 -5.2666 43 1 0.8116 -3.9289 -6.1862 44 1 0.4498 -3.5631 -4.4821 45 1 2.2979 -2.0060 -6.1699 46 1 0.7445 -1.5586 -5.7800 47 1 1.7960 -1.5553 -2.4980 48 1 0.6246 -2.5567 -3.3882 49 1 -0.1728 -3.5246 -1.2492 50 1 -0.3365 -1.7520 -1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:45 Heat of formation + Delta-G solvation = 22.283722 kcal Electronic energy + Delta-G solvation = -28421.212529 eV Core-core repulsion = 25026.122339 eV Total energy + Delta-G solvation = -3395.090190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91421 -39.41897 -37.78622 -35.37189 -34.19393 -33.43833 -32.08148 -31.10780 -30.40069 -29.59003 -26.84759 -25.87655 -25.49090 -23.18019 -22.71601 -22.64107 -22.18863 -20.60954 -19.51491 -17.80448 -17.40223 -16.98520 -16.85894 -16.50505 -16.39579 -15.82554 -15.73634 -15.13097 -15.04359 -14.71454 -14.67909 -14.45259 -14.22101 -13.97989 -13.74363 -13.43400 -13.31799 -12.96266 -12.82125 -12.74458 -12.59104 -12.38376 -12.35031 -12.22211 -12.08288 -12.00320 -11.78100 -11.73751 -11.35444 -11.25680 -10.74699 -10.59746 -10.24508 -10.17219 -9.62358 -9.44079 -9.20297 -8.89479 -7.95977 -6.04295 0.48589 0.50595 1.42617 1.45816 1.55358 2.51647 2.86855 3.06353 3.32993 3.59994 3.91074 3.93554 4.03075 4.09045 4.14793 4.24725 4.29542 4.38815 4.45816 4.51039 4.53399 4.61812 4.65080 4.69583 4.79343 4.81824 4.85343 4.88513 4.97136 4.98269 5.06416 5.12824 5.14921 5.17353 5.20269 5.27291 5.40223 5.48212 5.58183 5.59085 5.64891 5.72858 5.77275 5.88166 5.99360 6.13205 6.16721 6.28412 6.36793 6.45873 6.55177 6.59561 6.86861 7.03519 7.60520 9.09312 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.004787 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.089717 B = 5848.004776 C = 6529.497727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.495 4.495 8 H 0.048 0.952 9 C 0.041 3.959 10 C -0.099 4.099 11 C -0.096 4.096 12 C 0.106 3.894 13 N -0.503 5.503 14 C 0.081 3.919 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.111 4.111 22 C 0.089 3.911 23 H 0.086 0.914 24 C 0.071 3.929 25 N -0.839 5.839 26 C -0.067 4.067 27 C -0.105 4.105 28 H 0.255 0.745 29 H -0.018 1.018 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.343 0.657 46 H 0.340 0.660 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.014 0.986 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -15.098 -12.907 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.137 4.137 11 C -0.134 4.134 12 C -0.001 4.001 13 N -0.223 5.223 14 C -0.047 4.047 15 C -0.117 4.117 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.089 4.089 21 C -0.150 4.150 22 C -0.020 4.020 23 H 0.104 0.896 24 C -0.060 4.060 25 N -0.370 5.370 26 C -0.105 4.105 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.000 1.000 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.033 0.967 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.457 -14.426 -12.269 20.353 hybrid contribution -0.303 0.132 -0.238 0.407 sum 7.154 -14.294 -12.507 20.296 Atomic orbital electron populations 1.70022 1.06974 1.26323 1.52656 1.25548 0.95406 1.01600 0.95558 0.85769 0.79292 0.81032 0.77137 1.19441 1.21023 1.21216 1.21315 0.92376 0.91384 1.48293 0.93383 1.18668 0.93035 0.92983 0.93095 1.21443 0.97793 0.97305 0.97205 1.21608 0.97369 1.00327 0.94091 1.21460 0.93556 0.96840 0.88279 1.62559 1.01932 1.52999 1.04834 1.21347 0.92561 0.87957 1.02856 1.20539 0.94800 0.97478 0.98834 1.21312 0.98504 0.95219 0.99529 1.21362 0.99194 0.94046 1.00053 1.21364 0.93839 1.00873 0.98619 1.21316 0.99517 0.93543 1.00261 1.19673 0.95454 0.94134 0.99657 1.21094 0.95867 0.97007 1.01034 1.21766 0.96244 0.90052 0.93910 0.89622 1.21892 0.96044 0.88902 0.99186 1.58391 1.13325 1.10076 1.55176 1.21320 0.96039 0.97404 0.95708 1.21427 0.98601 0.97639 0.96710 0.93578 0.99991 0.94263 0.94011 0.92373 0.92879 0.94482 0.89648 0.89254 0.85239 0.84229 0.84084 0.84885 0.91015 0.88639 0.93953 0.91808 0.84395 0.84709 0.94187 0.91597 0.96732 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 11.32 21.45 0.24 -54.16 16 2 C 0.02 0.93 5.30 84.66 0.45 1.38 16 3 Si 0.94 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.50 -27.56 6.61 25.60 0.17 -27.39 16 8 H 0.05 2.68 6.71 -2.91 -0.02 2.66 16 9 C 0.04 2.10 2.59 -11.54 -0.03 2.07 16 10 C -0.10 -4.32 5.41 30.60 0.17 -4.15 16 11 C -0.10 -3.74 3.65 30.59 0.11 -3.62 16 12 C 0.11 3.83 1.41 44.91 0.06 3.89 16 13 N -0.50 -15.22 4.35 -850.84 -3.70 -18.92 16 14 C 0.08 2.22 5.05 85.59 0.43 2.65 16 15 C -0.11 -2.94 4.38 -19.86 -0.09 -3.02 16 16 C -0.13 -2.92 9.65 22.34 0.22 -2.71 16 17 C -0.13 -2.59 10.05 22.22 0.22 -2.37 16 18 C -0.13 -2.53 10.05 22.23 0.22 -2.30 16 19 C -0.13 -2.76 9.66 22.33 0.22 -2.55 16 20 C -0.09 -2.18 5.40 -19.85 -0.11 -2.29 16 21 C -0.11 -2.57 4.48 29.82 0.13 -2.43 16 22 C 0.09 2.19 2.44 44.83 0.11 2.30 16 23 H 0.09 1.92 8.05 -2.39 -0.02 1.91 16 24 C 0.07 1.70 5.39 86.30 0.46 2.16 16 25 N -0.84 -21.21 8.29 -186.72 -1.55 -22.76 16 26 C -0.07 -2.86 4.54 30.58 0.14 -2.72 16 27 C -0.11 -5.15 5.23 30.58 0.16 -4.99 16 28 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 29 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 2.02 5.60 -2.39 -0.01 2.01 16 33 H 0.05 2.31 6.35 -2.39 -0.02 2.29 16 34 H 0.04 1.35 4.98 -2.38 -0.01 1.34 16 35 H 0.09 2.55 5.52 -2.39 -0.01 2.53 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.07 1.88 6.20 -2.39 -0.01 1.87 16 42 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.06 1.82 5.47 -2.39 -0.01 1.81 16 45 H 0.34 7.46 8.99 -89.69 -0.81 6.66 16 46 H 0.34 7.87 9.08 -89.69 -0.81 7.06 16 47 H 0.04 2.01 7.22 -2.38 -0.02 1.99 16 48 H 0.07 2.60 3.97 -2.39 -0.01 2.59 16 49 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 3.10 6.07 -2.38 -0.01 3.08 16 Total: -1.00 -63.63 357.84 -0.59 -64.22 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.66 Total: 30.33 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 3.05 Total: -46.10 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -5.01 Total: -95.85 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -63.63 -0.59 -64.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.504 kcal (2) G-P(sol) polarization free energy of solvation -63.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds