Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38674 * 120.42312 * 2 1 4 4 C 1.38626 * 118.42415 * 180.24282 * 3 2 1 5 5 C 1.38228 * 119.15830 * 359.74517 * 4 3 2 6 6 N 1.31851 * 120.76599 * 0.02562 * 5 4 3 7 7 C 1.31889 * 121.72534 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61537 * 179.97438 * 7 6 5 9 9 C 1.52998 * 115.54970 * 258.92740 * 8 7 6 10 10 N 1.46900 * 109.47029 * 54.51924 * 9 8 7 11 11 C 1.46904 * 110.99639 * 184.77981 * 10 9 8 12 12 C 1.52998 * 109.46922 * 157.73263 * 11 10 9 13 13 C 1.53004 * 109.47125 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47119 * 299.99655 * 13 12 11 15 15 C 1.50700 * 109.47338 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47009 * 119.99904 * 19 17 15 22 22 H 1.48499 * 109.47290 * 239.99343 * 19 17 15 23 23 C 1.53004 * 109.46880 * 59.99676 * 14 13 12 24 24 C 1.52992 * 109.47403 * 300.00369 * 23 14 13 25 25 C 1.52998 * 117.49862 * 44.59794 * 8 7 6 26 26 C 1.53000 * 117.49613 * 113.25955 * 8 7 6 27 27 H 1.09001 * 109.46984 * 264.65443 * 1 2 3 28 28 H 1.09004 * 109.46893 * 24.65216 * 1 2 3 29 29 H 1.08994 * 109.47160 * 144.65214 * 1 2 3 30 30 H 1.08002 * 120.78478 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.42055 * 179.72663 * 4 3 2 32 32 H 1.08000 * 119.61327 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46648 * 294.51923 * 9 8 7 34 34 H 1.09003 * 109.47226 * 174.52139 * 9 8 7 35 35 H 1.00896 * 110.99862 * 60.82390 * 10 9 8 36 36 H 1.08992 * 109.47393 * 37.72811 * 11 10 9 37 37 H 1.09000 * 109.47798 * 59.99573 * 12 11 10 38 38 H 1.09004 * 109.47145 * 299.99447 * 12 11 10 39 39 H 1.08992 * 109.47131 * 59.99584 * 13 12 11 40 40 H 1.08993 * 109.46999 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47083 * 300.00604 * 14 13 12 42 42 H 0.97003 * 120.00251 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.47091 * 179.97438 * 23 14 13 44 44 H 1.09008 * 109.46848 * 60.00587 * 23 14 13 45 45 H 1.09001 * 109.47457 * 299.99622 * 24 23 14 46 46 H 1.09000 * 109.47431 * 180.02562 * 24 23 14 47 47 H 1.09000 * 117.49983 * 215.00191 * 25 8 7 48 48 H 1.09000 * 117.49967 * 0.02562 * 25 8 7 49 49 H 1.08999 * 117.50211 * 359.97223 * 26 8 7 50 50 H 1.08996 * 117.49893 * 144.97775 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0824 -0.0047 6 7 3.5254 -1.1997 0.0000 7 6 2.2066 -1.1916 0.0050 8 6 1.4539 -2.4972 0.0097 9 6 0.8895 -2.9384 -1.3423 10 7 1.9702 -2.9716 -2.3367 11 6 1.4460 -3.2815 -3.6736 12 6 2.4272 -2.7799 -4.7350 13 6 1.8816 -3.1032 -6.1274 14 6 1.7078 -4.6168 -6.2682 15 6 1.1710 -4.9353 -7.6399 16 1 0.9731 -4.1380 -8.3408 17 6 0.9315 -6.2446 -7.9994 18 7 1.1720 -7.2156 -7.1456 19 14 0.2654 -6.6394 -9.6994 20 1 0.0809 -5.3797 -10.4636 21 1 1.2255 -7.5174 -10.4156 22 1 -1.0401 -7.3352 -9.5702 23 6 0.7267 -5.1184 -5.2067 24 6 1.2723 -4.7950 -3.8144 25 6 1.9418 -3.5905 0.9622 26 6 0.6415 -2.8397 1.2601 27 1 -0.3633 -0.0957 1.0232 28 1 -0.3633 0.9340 -0.4287 29 1 -0.3633 -0.8382 -0.5945 30 1 1.6890 2.1423 0.0004 31 1 4.1736 2.0591 -0.0098 32 1 5.3046 -0.1287 -0.0092 33 1 0.1221 -2.2338 -1.6629 34 1 0.4529 -3.9326 -1.2468 35 1 2.6882 -3.6279 -2.0687 36 1 0.4823 -2.7907 -3.8088 37 1 3.3910 -3.2707 -4.5998 38 1 2.5513 -1.7016 -4.6344 39 1 0.9177 -2.6127 -6.2628 40 1 2.5808 -2.7463 -6.8834 41 1 2.6717 -5.1073 -6.1327 42 1 1.0038 -8.1368 -7.3987 43 1 0.6025 -6.1966 -5.3073 44 1 -0.2373 -4.6279 -5.3422 45 1 2.2362 -5.2856 -3.6789 46 1 0.5735 -5.1528 -3.0582 47 1 1.8608 -4.6241 0.6258 48 1 2.8070 -3.3654 1.5859 49 1 0.6518 -2.1210 2.0795 50 1 -0.2952 -3.3791 1.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = 35.264361 kcal Electronic energy + Delta-G solvation = -26549.980314 eV Core-core repulsion = 23155.453006 eV Total energy + Delta-G solvation = -3394.527308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64571 -38.41220 -37.36503 -34.28355 -33.62136 -32.10205 -31.60853 -29.61789 -28.79774 -27.44701 -25.82562 -24.15007 -23.36667 -22.63397 -21.98910 -21.49217 -20.47522 -19.81005 -18.74574 -16.76917 -16.43876 -16.27776 -15.70399 -15.20239 -14.77653 -14.57971 -14.49308 -14.09719 -13.79201 -13.46367 -13.19760 -13.13459 -12.87084 -12.67314 -12.57575 -12.55991 -12.19842 -11.86190 -11.74642 -11.58218 -11.31583 -11.20139 -10.98110 -10.80731 -10.57493 -10.36839 -10.22036 -10.11839 -10.08804 -9.87359 -9.70748 -9.33447 -9.31747 -8.94667 -8.76889 -8.61592 -8.28480 -7.86172 -5.93628 -3.99549 1.08827 1.27566 3.31344 3.39484 3.43674 3.51519 3.75812 4.16256 4.36253 4.47594 4.59490 4.73162 4.75640 4.90802 4.95215 5.05291 5.15621 5.30479 5.34688 5.39860 5.46138 5.48635 5.51216 5.56980 5.60945 5.71547 5.77770 5.84398 5.89322 5.99139 6.01947 6.05780 6.13427 6.23660 6.24778 6.35911 6.43648 6.47452 6.69223 6.71507 6.73805 6.88258 6.99674 7.18732 7.28013 7.46953 7.59329 7.77248 7.80376 8.06946 8.08365 8.20926 8.53233 9.05233 9.64889 11.11692 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.002855 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.733670 B = 9803.707368 C =10274.087717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.128 4.128 3 C -0.080 4.080 4 C -0.179 4.179 5 C 0.094 3.906 6 N -0.463 5.463 7 C 0.192 3.808 8 C -0.074 4.074 9 C 0.101 3.899 10 N -0.681 5.681 11 C 0.093 3.907 12 C -0.098 4.098 13 C -0.108 4.108 14 C 0.049 3.951 15 C -0.510 4.510 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.165 4.165 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.341 0.659 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.024 0.976 42 H 0.258 0.742 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 13.806 19.199 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.199 4.199 5 C -0.063 4.063 6 N -0.170 5.170 7 C 0.054 3.946 8 C -0.075 4.075 9 C -0.029 4.029 10 N -0.310 5.310 11 C -0.017 4.017 12 C -0.137 4.137 13 C -0.146 4.146 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.143 4.143 24 C -0.182 4.182 25 C -0.192 4.192 26 C -0.203 4.203 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.704 13.515 19.103 23.411 hybrid contribution -0.894 -0.344 -0.897 1.312 sum -0.190 13.170 18.206 22.471 Atomic orbital electron populations 1.20794 0.90509 1.03122 1.02339 1.20623 0.97468 0.93402 1.01485 1.21415 0.94184 0.97824 0.97215 1.22065 0.95247 0.99548 1.03045 1.22669 1.00109 0.87650 0.95879 1.67377 1.07683 1.31116 1.10873 1.19821 0.88957 0.92047 0.93775 1.19955 1.02117 0.93228 0.92234 1.21427 0.93710 0.99017 0.88699 1.60559 1.12222 1.56619 1.01605 1.21611 0.97745 0.94867 0.87433 1.21456 0.98136 0.99197 0.94870 1.21623 0.99130 1.00086 0.93779 1.18650 0.95345 0.89120 0.93855 1.21301 1.42694 0.92050 0.98822 0.92799 1.24974 0.95691 0.96537 0.96895 1.69893 1.49256 0.99413 1.34489 0.86607 0.78591 0.78313 0.84904 1.19844 1.21118 1.21149 1.21538 0.97834 1.03992 0.90953 1.22286 1.00375 0.95545 0.99992 1.22991 0.97533 0.96664 1.02012 1.23085 0.96168 1.03428 0.97663 0.91231 0.91777 0.90582 0.85303 0.85265 0.83154 0.90806 0.94465 0.84079 0.91442 0.92892 0.93349 0.93637 0.93500 0.95829 0.93236 0.89227 0.95029 0.92873 0.94433 0.88497 0.88456 0.88866 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.95 36.00 0.32 -0.65 16 2 C -0.13 -1.41 5.89 -104.48 -0.62 -2.02 16 3 C -0.08 -0.79 9.84 -39.28 -0.39 -1.18 16 4 C -0.18 -1.73 10.11 -39.44 -0.40 -2.12 16 5 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 6 N -0.46 -6.16 10.13 -9.47 -0.10 -6.26 16 7 C 0.19 2.40 5.53 -82.59 -0.46 1.94 16 8 C -0.07 -0.84 1.10 -155.66 -0.17 -1.01 16 9 C 0.10 1.30 5.24 -3.83 -0.02 1.28 16 10 N -0.68 -10.26 5.90 -106.72 -0.63 -10.89 16 11 C 0.09 1.60 2.46 -67.71 -0.17 1.43 16 12 C -0.10 -1.83 5.53 -26.73 -0.15 -1.98 16 13 C -0.11 -2.31 5.14 -26.73 -0.14 -2.44 16 14 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 15 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -25.65 11.32 55.43 0.63 -25.03 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.10 -2.46 4.98 -26.73 -0.13 -2.59 16 24 C -0.14 -2.74 5.17 -26.74 -0.14 -2.88 16 25 C -0.15 -1.64 9.81 -26.69 -0.26 -1.90 16 26 C -0.17 -1.51 9.25 -26.69 -0.25 -1.76 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.08 0.72 5.37 -51.93 -0.28 0.44 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.07 0.94 6.10 -51.93 -0.32 0.62 16 34 H 0.04 0.48 7.34 -51.93 -0.38 0.10 16 35 H 0.34 5.28 8.57 -39.29 -0.34 4.95 16 36 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 44 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.04 0.67 7.38 -51.93 -0.38 0.29 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -29.69 388.92 -11.71 -41.40 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.72 Total: 5.36 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -3.74 Total: -26.92 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.10 Total: -42.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.69 -11.71 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.661 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds