Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38674 * 120.42312 * 2 1 4 4 C 1.38626 * 118.42415 * 180.24282 * 3 2 1 5 5 C 1.38228 * 119.15830 * 359.74517 * 4 3 2 6 6 N 1.31851 * 120.76599 * 0.02562 * 5 4 3 7 7 C 1.31889 * 121.72534 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61537 * 179.97438 * 7 6 5 9 9 C 1.52998 * 115.54970 * 258.92740 * 8 7 6 10 10 N 1.46900 * 109.47029 * 54.51924 * 9 8 7 11 11 C 1.46904 * 110.99639 * 184.77981 * 10 9 8 12 12 C 1.52998 * 109.46922 * 157.73263 * 11 10 9 13 13 C 1.53004 * 109.47125 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47119 * 299.99655 * 13 12 11 15 15 C 1.50700 * 109.47338 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47009 * 119.99904 * 19 17 15 22 22 H 1.48499 * 109.47290 * 239.99343 * 19 17 15 23 23 C 1.53004 * 109.46880 * 59.99676 * 14 13 12 24 24 C 1.52992 * 109.47403 * 300.00369 * 23 14 13 25 25 C 1.52998 * 117.49862 * 44.59794 * 8 7 6 26 26 C 1.53000 * 117.49613 * 113.25955 * 8 7 6 27 27 H 1.09001 * 109.46984 * 264.65443 * 1 2 3 28 28 H 1.09004 * 109.46893 * 24.65216 * 1 2 3 29 29 H 1.08994 * 109.47160 * 144.65214 * 1 2 3 30 30 H 1.08002 * 120.78478 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.42055 * 179.72663 * 4 3 2 32 32 H 1.08000 * 119.61327 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46648 * 294.51923 * 9 8 7 34 34 H 1.09003 * 109.47226 * 174.52139 * 9 8 7 35 35 H 1.00896 * 110.99862 * 60.82390 * 10 9 8 36 36 H 1.08992 * 109.47393 * 37.72811 * 11 10 9 37 37 H 1.09000 * 109.47798 * 59.99573 * 12 11 10 38 38 H 1.09004 * 109.47145 * 299.99447 * 12 11 10 39 39 H 1.08992 * 109.47131 * 59.99584 * 13 12 11 40 40 H 1.08993 * 109.46999 * 180.02562 * 13 12 11 41 41 H 1.09001 * 109.47083 * 300.00604 * 14 13 12 42 42 H 0.97003 * 120.00251 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.47091 * 179.97438 * 23 14 13 44 44 H 1.09008 * 109.46848 * 60.00587 * 23 14 13 45 45 H 1.09001 * 109.47457 * 299.99622 * 24 23 14 46 46 H 1.09000 * 109.47431 * 180.02562 * 24 23 14 47 47 H 1.09000 * 117.49983 * 215.00191 * 25 8 7 48 48 H 1.09000 * 117.49967 * 0.02562 * 25 8 7 49 49 H 1.08999 * 117.50211 * 359.97223 * 26 8 7 50 50 H 1.08996 * 117.49893 * 144.97775 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0824 -0.0047 6 7 3.5254 -1.1997 0.0000 7 6 2.2066 -1.1916 0.0050 8 6 1.4539 -2.4972 0.0097 9 6 0.8895 -2.9384 -1.3423 10 7 1.9702 -2.9716 -2.3367 11 6 1.4460 -3.2815 -3.6736 12 6 2.4272 -2.7799 -4.7350 13 6 1.8816 -3.1032 -6.1274 14 6 1.7078 -4.6168 -6.2682 15 6 1.1710 -4.9353 -7.6399 16 1 0.9731 -4.1380 -8.3408 17 6 0.9315 -6.2446 -7.9994 18 7 1.1720 -7.2156 -7.1456 19 14 0.2654 -6.6394 -9.6994 20 1 0.0809 -5.3797 -10.4636 21 1 1.2255 -7.5174 -10.4156 22 1 -1.0401 -7.3352 -9.5702 23 6 0.7267 -5.1184 -5.2067 24 6 1.2723 -4.7950 -3.8144 25 6 1.9418 -3.5905 0.9622 26 6 0.6415 -2.8397 1.2601 27 1 -0.3633 -0.0957 1.0232 28 1 -0.3633 0.9340 -0.4287 29 1 -0.3633 -0.8382 -0.5945 30 1 1.6890 2.1423 0.0004 31 1 4.1736 2.0591 -0.0098 32 1 5.3046 -0.1287 -0.0092 33 1 0.1221 -2.2338 -1.6629 34 1 0.4529 -3.9326 -1.2468 35 1 2.6882 -3.6279 -2.0687 36 1 0.4823 -2.7907 -3.8088 37 1 3.3910 -3.2707 -4.5998 38 1 2.5513 -1.7016 -4.6344 39 1 0.9177 -2.6127 -6.2628 40 1 2.5808 -2.7463 -6.8834 41 1 2.6717 -5.1073 -6.1327 42 1 1.0038 -8.1368 -7.3987 43 1 0.6025 -6.1966 -5.3073 44 1 -0.2373 -4.6279 -5.3422 45 1 2.2362 -5.2856 -3.6789 46 1 0.5735 -5.1528 -3.0582 47 1 1.8608 -4.6241 0.6258 48 1 2.8070 -3.3654 1.5859 49 1 0.6518 -2.1210 2.0795 50 1 -0.2952 -3.3791 1.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = 20.174586 kcal Electronic energy + Delta-G solvation = -26550.634655 eV Core-core repulsion = 23155.453006 eV Total energy + Delta-G solvation = -3395.181649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44167 -39.80893 -38.44030 -35.87711 -34.36762 -33.95673 -32.35992 -31.33348 -30.44226 -28.15222 -27.27840 -25.59443 -24.47303 -23.39882 -23.20704 -22.74768 -22.06414 -20.87013 -20.29570 -18.39547 -17.67283 -17.24458 -16.76758 -16.47683 -16.15329 -15.76913 -15.60770 -15.15090 -14.91033 -14.85900 -14.55230 -14.35966 -14.02813 -13.89125 -13.85424 -13.57598 -13.32981 -13.15754 -12.98260 -12.92173 -12.70439 -12.53506 -12.35294 -12.31107 -12.16411 -11.96740 -11.80198 -11.72956 -11.35144 -11.16918 -10.96375 -10.78976 -10.57774 -10.47675 -10.37459 -10.12086 -9.54094 -9.18074 -8.07010 -6.21427 0.31341 0.51628 1.38796 1.40731 1.52167 2.43280 2.68810 2.96492 3.18308 3.24668 3.44623 3.85578 3.88570 3.92458 4.03495 4.07925 4.16793 4.21082 4.25959 4.36085 4.44268 4.54635 4.59248 4.61976 4.68316 4.72004 4.76805 4.80183 4.84658 4.85621 4.89260 4.92515 4.97250 5.05067 5.10527 5.12274 5.21879 5.26410 5.30585 5.33579 5.37557 5.39961 5.45854 5.49731 5.60925 5.68660 5.95895 6.03974 6.20406 6.21380 6.42029 6.51017 6.91577 7.27309 7.46572 8.96538 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.002855 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.733670 B = 9803.707368 C =10274.087717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.176 4.176 5 C 0.073 3.927 6 N -0.494 5.494 7 C 0.170 3.830 8 C -0.081 4.081 9 C 0.103 3.897 10 N -0.677 5.677 11 C 0.106 3.894 12 C -0.089 4.089 13 C -0.100 4.100 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.096 4.096 24 C -0.130 4.130 25 C -0.162 4.162 26 C -0.142 4.142 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.339 0.661 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.043 0.957 41 H -0.011 1.011 42 H 0.259 0.741 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.054 0.946 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 15.603 20.064 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 C -0.113 4.113 4 C -0.196 4.196 5 C -0.084 4.084 6 N -0.202 5.202 7 C 0.032 3.968 8 C -0.082 4.082 9 C -0.027 4.027 10 N -0.306 5.306 11 C -0.003 4.003 12 C -0.127 4.127 13 C -0.138 4.138 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.135 4.135 24 C -0.169 4.169 25 C -0.199 4.199 26 C -0.180 4.180 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.007 0.993 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.120 0.880 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.313 15.324 19.981 25.183 hybrid contribution -0.528 -0.883 -1.148 1.541 sum -0.841 14.442 18.833 23.748 Atomic orbital electron populations 1.20816 0.89105 1.03422 1.03180 1.20927 0.98650 0.93370 1.01077 1.21803 0.94478 0.98580 0.96477 1.22381 0.95610 0.99991 1.01609 1.23048 1.00993 0.87995 0.96332 1.67335 1.08483 1.32431 1.11949 1.20017 0.88969 0.92874 0.94913 1.19855 1.03170 0.93274 0.91948 1.21470 0.93064 0.99246 0.88897 1.60533 1.12833 1.56143 1.01047 1.21370 0.97487 0.92952 0.88522 1.21342 0.97871 0.99979 0.93550 1.21485 0.99400 0.97263 0.95654 1.18618 0.93715 0.91437 0.93456 1.21670 1.43083 0.92318 1.00132 0.93178 1.25747 0.95958 0.96445 1.00587 1.70035 1.49831 0.99657 1.36164 0.85599 0.77998 0.78186 0.80444 1.19177 1.20748 1.20546 1.21323 0.97447 1.01559 0.93176 1.22143 0.99855 0.97310 0.97636 1.22965 0.98301 0.96568 1.02107 1.23147 0.95895 1.02593 0.96404 0.89839 0.90613 0.91309 0.82800 0.82590 0.81795 0.90427 0.94318 0.84362 0.91115 0.93674 0.91887 0.93313 0.93815 0.99313 0.93184 0.92638 0.95390 0.93931 0.92781 0.88542 0.89329 0.88002 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.95 71.24 0.64 -0.99 16 2 C -0.14 -2.77 5.89 -19.77 -0.12 -2.88 16 3 C -0.09 -1.51 9.84 22.47 0.22 -1.29 16 4 C -0.18 -3.02 10.11 22.36 0.23 -2.80 16 5 C 0.07 1.56 11.18 84.69 0.95 2.50 16 6 N -0.49 -12.84 10.13 -183.88 -1.86 -14.71 16 7 C 0.17 4.03 5.53 42.54 0.24 4.27 16 8 C -0.08 -1.74 1.10 -52.93 -0.06 -1.80 16 9 C 0.10 2.47 5.24 86.30 0.45 2.93 16 10 N -0.68 -19.68 5.90 -491.57 -2.90 -22.57 16 11 C 0.11 3.57 2.46 44.91 0.11 3.68 16 12 C -0.09 -3.26 5.53 30.59 0.17 -3.09 16 13 C -0.10 -4.27 5.14 30.60 0.16 -4.11 16 14 C 0.05 2.37 2.10 -11.54 -0.02 2.35 16 15 C -0.53 -30.23 8.56 25.60 0.22 -30.01 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 19 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C -0.10 -4.62 4.98 30.59 0.15 -4.47 16 24 C -0.13 -4.99 5.17 30.59 0.16 -4.83 16 25 C -0.16 -3.29 9.81 30.62 0.30 -2.99 16 26 C -0.14 -2.32 9.25 30.62 0.28 -2.04 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.94 8.06 -2.38 -0.02 0.92 16 29 H 0.07 1.14 5.37 -2.39 -0.01 1.12 16 30 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.08 1.82 6.10 -2.38 -0.01 1.81 16 34 H 0.04 0.93 7.34 -2.39 -0.02 0.91 16 35 H 0.34 10.30 8.57 -89.70 -0.77 9.53 16 36 H 0.07 2.38 7.77 -2.39 -0.02 2.36 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 44 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.05 1.89 7.38 -2.39 -0.02 1.87 16 47 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.92 388.92 2.17 -62.75 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.14 Total: 26.36 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 4.52 Total: -44.51 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -4.52 Total: -91.06 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.92 2.17 -62.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.926 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds