Wall clock time and date at job start Tue Mar 31 2020 11:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38667 * 120.79278 * 2 1 4 4 C 1.38182 * 119.16630 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76386 * 0.02562 * 4 3 2 6 6 C 1.31848 * 121.72673 * 359.97362 * 5 4 3 7 7 C 1.50701 * 119.61931 * 180.02562 * 6 5 4 8 8 C 1.53004 * 115.55114 * 254.61629 * 7 6 5 9 9 N 1.46900 * 109.47019 * 65.56169 * 8 7 6 10 10 C 1.46896 * 111.00155 * 185.45556 * 9 8 7 11 11 C 1.53004 * 109.47143 * 154.99821 * 10 9 8 12 12 C 1.52995 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47655 * 300.00255 * 12 11 10 14 14 C 1.50698 * 109.47628 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99676 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00171 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00030 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99875 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47210 * 60.00164 * 18 16 14 20 20 H 1.48495 * 109.46853 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.46973 * 299.99925 * 18 16 14 22 22 C 1.53006 * 109.46765 * 59.99754 * 13 12 11 23 23 C 1.52992 * 109.47473 * 275.00293 * 10 9 8 24 24 C 1.52996 * 117.49739 * 40.28471 * 7 6 5 25 25 C 1.52995 * 117.49972 * 108.94532 * 7 6 5 26 26 C 1.38237 * 120.76406 * 0.28105 * 6 5 4 27 27 H 1.09001 * 109.46983 * 90.00352 * 1 2 3 28 28 H 1.09005 * 109.47202 * 210.00098 * 1 2 3 29 29 H 1.08997 * 109.47370 * 330.00076 * 1 2 3 30 30 H 1.07998 * 120.41908 * 0.04221 * 3 2 1 31 31 H 1.07997 * 119.61648 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47180 * 305.56636 * 8 7 6 33 33 H 1.08998 * 109.46989 * 185.56192 * 8 7 6 34 34 H 1.00903 * 111.00182 * 61.50124 * 9 8 7 35 35 H 1.09005 * 109.46944 * 35.00651 * 10 9 8 36 36 H 1.09001 * 109.47016 * 60.00599 * 11 10 9 37 37 H 1.08995 * 109.47654 * 300.00268 * 11 10 9 38 38 H 1.09001 * 109.47500 * 60.00638 * 12 11 10 39 39 H 1.09005 * 109.47489 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.46978 * 300.00702 * 13 12 11 41 41 H 0.97002 * 120.00312 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46684 * 179.97438 * 22 13 12 43 43 H 1.08998 * 109.47092 * 60.00688 * 22 13 12 44 44 H 1.09005 * 109.47328 * 300.00122 * 23 10 9 45 45 H 1.09003 * 109.47410 * 59.99388 * 23 10 9 46 46 H 1.08996 * 117.49858 * 215.00086 * 24 7 6 47 47 H 1.09002 * 117.49885 * 0.02562 * 24 7 6 48 48 H 1.09001 * 117.49773 * 359.97438 * 25 7 6 49 49 H 1.09000 * 117.49868 * 144.99879 * 25 7 6 50 50 H 1.07992 * 120.41976 * 179.70026 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1517 -0.0016 7 6 4.3800 -2.4401 -0.0022 8 6 4.4087 -3.1939 -1.3333 9 7 5.1329 -2.3965 -2.3321 10 6 5.0700 -3.0286 -3.6566 11 6 5.2493 -1.9626 -4.7395 12 6 5.1832 -2.6208 -6.1190 13 6 6.2963 -3.6635 -6.2406 14 6 6.2308 -4.3123 -7.5991 15 1 5.4714 -4.0108 -8.3055 16 6 7.1402 -5.2908 -7.9404 17 7 8.0645 -5.6583 -7.0802 18 14 7.0593 -6.0945 -9.6248 19 1 7.2341 -5.0601 -10.6758 20 1 8.1396 -7.1066 -9.7426 21 1 5.7405 -6.7553 -9.7951 22 6 6.1169 -4.7295 -5.1577 23 6 6.1834 -4.0709 -3.7778 24 6 5.6319 -2.5072 0.8748 25 6 4.3702 -3.2729 1.2812 26 6 2.2165 -1.1909 -0.0064 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6968 2.1377 0.0007 31 1 4.1583 2.0753 -0.0010 32 1 3.3882 -3.3654 -1.6759 33 1 4.9123 -4.1511 -1.1980 34 1 6.0894 -2.2444 -2.0491 35 1 4.1023 -3.5143 -3.7818 36 1 6.2170 -1.4768 -4.6144 37 1 4.4561 -1.2200 -4.6533 38 1 4.2153 -3.1063 -6.2440 39 1 5.3114 -1.8615 -6.8905 40 1 7.2641 -3.1780 -6.1156 41 1 8.7041 -6.3470 -7.3201 42 1 6.9096 -5.4725 -5.2446 43 1 5.1491 -5.2150 -5.2826 44 1 7.1511 -3.5851 -3.6526 45 1 6.0557 -4.8303 -3.0063 46 1 6.4759 -3.0885 0.5035 47 1 5.8898 -1.6197 1.4526 48 1 3.7988 -2.8887 2.1261 49 1 4.3843 -4.3578 1.1772 50 1 1.6964 -2.1373 -0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:14 Heat of formation + Delta-G solvation = 17.454961 kcal Electronic energy + Delta-G solvation = -26157.820139 eV Core-core repulsion = 22762.520558 eV Total energy + Delta-G solvation = -3395.299581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35045 -39.83558 -38.50920 -35.87537 -34.65690 -33.94591 -31.83597 -31.32888 -30.43228 -28.64529 -27.22995 -25.49921 -24.64213 -23.49494 -23.18479 -22.90381 -22.05806 -20.71936 -19.98406 -18.38946 -17.54686 -17.22763 -16.84209 -16.62779 -16.23821 -15.70548 -15.66345 -15.33307 -14.93282 -14.89931 -14.69326 -14.38165 -13.99816 -13.82095 -13.62853 -13.55472 -13.35055 -13.28815 -13.01034 -12.90966 -12.81255 -12.56965 -12.37925 -12.30406 -12.16986 -11.97880 -11.80126 -11.72561 -11.38589 -11.16958 -11.01707 -10.78493 -10.58021 -10.36970 -10.28556 -10.17962 -9.76874 -9.18034 -8.06732 -6.21280 0.29438 0.45522 1.40505 1.41704 1.49338 2.43365 2.65784 2.93487 3.18517 3.26034 3.41315 3.79525 3.86927 3.92314 3.94510 4.06697 4.16413 4.19278 4.33073 4.38751 4.41642 4.48248 4.56102 4.65972 4.67309 4.74877 4.76992 4.79420 4.80606 4.83857 4.86452 4.90717 4.97162 5.04899 5.08941 5.10290 5.13684 5.21838 5.27005 5.31136 5.32996 5.38916 5.45902 5.50081 5.60558 5.68587 5.92964 6.04092 6.19557 6.21247 6.42129 6.51861 6.91326 7.24992 7.46558 8.96500 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.002721 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.259112 B =10289.581375 C =10919.328749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.185 4.185 4 C 0.087 3.913 5 N -0.501 5.501 6 C 0.174 3.826 7 C -0.086 4.086 8 C 0.106 3.894 9 N -0.678 5.678 10 C 0.106 3.894 11 C -0.089 4.089 12 C -0.100 4.100 13 C 0.047 3.953 14 C -0.536 4.536 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.917 5.917 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.097 4.097 23 C -0.130 4.130 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.177 4.177 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.043 0.957 40 H -0.011 1.011 41 H 0.259 0.741 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 9.671 19.903 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.204 4.204 4 C -0.070 4.070 5 N -0.210 5.210 6 C 0.037 3.963 7 C -0.087 4.087 8 C -0.024 4.024 9 N -0.307 5.307 10 C -0.004 4.004 11 C -0.128 4.128 12 C -0.138 4.138 13 C 0.029 3.971 14 C -0.574 4.574 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.777 3.223 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.136 4.136 23 C -0.169 4.169 24 C -0.194 4.194 25 C -0.183 4.183 26 C -0.197 4.197 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.173 0.827 31 H 0.185 0.815 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.007 0.993 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.119 0.881 49 H 0.132 0.868 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.296 9.995 19.806 25.865 hybrid contribution 0.280 -1.243 -1.130 1.703 sum -13.016 8.752 18.676 24.389 Atomic orbital electron populations 1.20862 0.88361 1.04270 1.03446 1.20671 0.98169 0.92657 0.94337 1.22284 0.95392 0.99615 1.03152 1.23097 0.92707 0.96183 0.94991 1.67370 1.42232 0.98587 1.12827 1.20150 0.90564 0.91853 0.93765 1.19915 1.02195 0.94048 0.92544 1.21394 0.98909 0.93134 0.88961 1.60504 1.19989 1.48911 1.01317 1.21373 0.97502 0.92812 0.88696 1.21346 1.00780 0.97145 0.93482 1.21492 0.98879 0.97703 0.95767 1.18605 0.92749 0.92382 0.93399 1.21619 1.14370 1.20666 1.00790 0.93186 1.25743 0.95058 0.97435 1.00446 1.70015 1.18042 1.31379 1.36234 0.85715 0.77765 0.78252 0.80559 1.19790 1.20942 1.19590 1.21340 0.99440 0.99504 0.93272 1.22147 0.98649 0.98421 0.97670 1.22898 0.91759 1.02391 1.02363 1.23162 1.00481 0.99092 0.95543 1.21925 0.94534 0.99619 1.03631 0.90159 0.90311 0.89668 0.82683 0.81468 0.90933 0.94080 0.84213 0.91304 0.93528 0.91965 0.93395 0.93794 0.99254 0.93146 0.92560 0.95482 0.93713 0.92770 0.88484 0.89086 0.88057 0.86812 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.06 71.23 0.72 -0.53 16 2 C -0.05 -0.89 5.92 -19.67 -0.12 -1.00 16 3 C -0.18 -3.19 9.82 22.36 0.22 -2.97 16 4 C 0.09 1.82 11.18 84.67 0.95 2.77 16 5 N -0.50 -12.97 10.05 -183.88 -1.85 -14.82 16 6 C 0.17 4.18 5.79 42.56 0.25 4.43 16 7 C -0.09 -1.88 1.91 -52.93 -0.10 -1.98 16 8 C 0.11 2.59 5.34 86.30 0.46 3.05 16 9 N -0.68 -19.77 6.13 -491.57 -3.01 -22.79 16 10 C 0.11 3.57 2.47 44.91 0.11 3.68 16 11 C -0.09 -3.27 5.53 30.59 0.17 -3.10 16 12 C -0.10 -4.30 5.14 30.59 0.16 -4.14 16 13 C 0.05 2.42 2.10 -11.54 -0.02 2.40 16 14 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 16 C 0.01 0.65 5.30 84.66 0.45 1.10 16 17 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 18 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C -0.10 -4.65 4.98 30.61 0.15 -4.50 16 23 C -0.13 -4.96 5.18 30.61 0.16 -4.80 16 24 C -0.16 -3.23 9.79 30.62 0.30 -2.93 16 25 C -0.14 -2.47 9.92 30.62 0.30 -2.17 16 26 C -0.18 -3.65 9.49 22.36 0.21 -3.43 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.73 8.10 -2.38 -0.02 0.71 16 29 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.07 1.78 7.92 -2.39 -0.02 1.76 16 33 H 0.04 0.98 7.52 -2.39 -0.02 0.96 16 34 H 0.34 10.11 8.53 -89.69 -0.76 9.34 16 35 H 0.07 2.34 7.71 -2.38 -0.02 2.32 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.78 8.13 -2.38 -0.02 1.76 16 45 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 46 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 48 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -64.86 396.24 2.12 -62.74 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.13 Total: 26.56 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.58 Total: -44.32 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -4.62 Total: -91.42 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.86 2.12 -62.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.193 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds